Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04456 and MPMX20_04457 overlap by 4 nucleotides MPMX20_04457 and MPMX20_04458 are separated by 61 nucleotides MPMX20_04458 and MPMX20_04459 are separated by 27 nucleotides
MPMX20_04456: MPMX20_04456 - Homoserine/homoserine lactone efflux protein, at 4,659,573 to 4,660,193
_04456
MPMX20_04457: MPMX20_04457 - Threonine efflux protein, at 4,660,190 to 4,660,810
_04457
MPMX20_04458: MPMX20_04458 - ATP-dependent DNA helicase RecQ, at 4,660,872 to 4,662,764
_04458
MPMX20_04459: MPMX20_04459 - Phospholipase A1, at 4,662,792 to 4,663,661
_04459
Position (kb)
4660
4661
4662
4663 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 4659.927 kb on + strand, within MPMX20_04456 at 4659.935 kb on - strand, within MPMX20_04456 at 4659.985 kb on - strand, within MPMX20_04456 at 4660.002 kb on - strand, within MPMX20_04456 at 4660.003 kb on - strand, within MPMX20_04456 at 4660.003 kb on - strand, within MPMX20_04456 at 4660.003 kb on - strand, within MPMX20_04456 at 4660.092 kb on - strand, within MPMX20_04456 at 4660.096 kb on + strand, within MPMX20_04456 at 4660.104 kb on - strand, within MPMX20_04456 at 4660.105 kb on + strand, within MPMX20_04456 at 4660.123 kb on - strand, within MPMX20_04456 at 4660.123 kb on - strand, within MPMX20_04456 at 4660.130 kb on - strand, within MPMX20_04456 at 4660.165 kb on - strand at 4660.275 kb on + strand, within MPMX20_04457 at 4660.295 kb on + strand, within MPMX20_04457 at 4660.322 kb on - strand, within MPMX20_04457 at 4660.323 kb on - strand, within MPMX20_04457 at 4660.356 kb on - strand, within MPMX20_04457 at 4660.356 kb on - strand, within MPMX20_04457 at 4660.377 kb on + strand, within MPMX20_04457 at 4660.385 kb on - strand, within MPMX20_04457 at 4660.487 kb on - strand, within MPMX20_04457 at 4660.543 kb on - strand, within MPMX20_04457 at 4660.551 kb on - strand, within MPMX20_04457 at 4660.581 kb on - strand, within MPMX20_04457 at 4660.627 kb on + strand, within MPMX20_04457 at 4660.765 kb on + strand at 4660.765 kb on + strand at 4660.768 kb on - strand at 4660.772 kb on + strand at 4660.773 kb on - strand at 4660.780 kb on - strand at 4660.890 kb on + strand at 4660.898 kb on - strand at 4660.898 kb on - strand at 4660.922 kb on - strand at 4660.949 kb on + strand at 4661.076 kb on - strand, within MPMX20_04458 at 4661.076 kb on - strand, within MPMX20_04458 at 4661.076 kb on - strand, within MPMX20_04458 at 4661.076 kb on - strand, within MPMX20_04458 at 4661.107 kb on - strand, within MPMX20_04458 at 4661.196 kb on - strand, within MPMX20_04458 at 4661.198 kb on + strand, within MPMX20_04458 at 4661.198 kb on + strand, within MPMX20_04458 at 4661.206 kb on - strand, within MPMX20_04458 at 4661.235 kb on + strand, within MPMX20_04458 at 4661.240 kb on + strand, within MPMX20_04458 at 4661.243 kb on - strand, within MPMX20_04458 at 4661.288 kb on + strand, within MPMX20_04458 at 4661.288 kb on + strand, within MPMX20_04458 at 4661.315 kb on - strand, within MPMX20_04458 at 4661.315 kb on - strand, within MPMX20_04458 at 4661.320 kb on - strand, within MPMX20_04458 at 4661.333 kb on - strand, within MPMX20_04458 at 4661.382 kb on + strand, within MPMX20_04458 at 4661.390 kb on - strand, within MPMX20_04458 at 4661.390 kb on - strand, within MPMX20_04458 at 4661.460 kb on + strand, within MPMX20_04458 at 4661.486 kb on + strand, within MPMX20_04458 at 4661.525 kb on - strand, within MPMX20_04458 at 4661.573 kb on - strand, within MPMX20_04458 at 4661.573 kb on - strand, within MPMX20_04458 at 4661.607 kb on - strand, within MPMX20_04458 at 4661.680 kb on + strand, within MPMX20_04458 at 4661.782 kb on - strand, within MPMX20_04458 at 4661.782 kb on - strand, within MPMX20_04458 at 4661.782 kb on - strand, within MPMX20_04458 at 4661.784 kb on + strand, within MPMX20_04458 at 4661.944 kb on + strand, within MPMX20_04458 at 4661.958 kb on - strand, within MPMX20_04458 at 4662.002 kb on + strand, within MPMX20_04458 at 4662.002 kb on + strand, within MPMX20_04458 at 4662.083 kb on - strand, within MPMX20_04458 at 4662.267 kb on - strand, within MPMX20_04458 at 4662.347 kb on - strand, within MPMX20_04458 at 4662.367 kb on - strand, within MPMX20_04458 at 4662.376 kb on + strand, within MPMX20_04458 at 4662.384 kb on - strand, within MPMX20_04458 at 4662.436 kb on - strand, within MPMX20_04458 at 4662.512 kb on + strand, within MPMX20_04458 at 4662.535 kb on - strand, within MPMX20_04458 at 4662.535 kb on - strand, within MPMX20_04458 at 4662.609 kb on + strand at 4662.609 kb on + strand at 4662.619 kb on + strand at 4662.627 kb on - strand at 4662.701 kb on + strand at 4662.709 kb on - strand at 4662.816 kb on + strand at 4662.821 kb on + strand at 4662.821 kb on + strand at 4662.824 kb on - strand at 4662.824 kb on - strand at 4662.829 kb on - strand at 4662.829 kb on - strand at 4662.829 kb on - strand at 4662.829 kb on - strand at 4662.863 kb on + strand at 4662.882 kb on - strand, within MPMX20_04459 at 4662.894 kb on - strand, within MPMX20_04459 at 4662.929 kb on + strand, within MPMX20_04459 at 4662.947 kb on - strand, within MPMX20_04459 at 4662.960 kb on + strand, within MPMX20_04459 at 4662.960 kb on + strand, within MPMX20_04459 at 4662.988 kb on + strand, within MPMX20_04459 at 4663.003 kb on - strand, within MPMX20_04459 at 4663.006 kb on + strand, within MPMX20_04459 at 4663.024 kb on + strand, within MPMX20_04459 at 4663.024 kb on + strand, within MPMX20_04459 at 4663.024 kb on - strand, within MPMX20_04459 at 4663.024 kb on - strand, within MPMX20_04459 at 4663.058 kb on - strand, within MPMX20_04459 at 4663.075 kb on - strand, within MPMX20_04459 at 4663.075 kb on - strand, within MPMX20_04459 at 4663.118 kb on + strand, within MPMX20_04459 at 4663.141 kb on - strand, within MPMX20_04459 at 4663.153 kb on + strand, within MPMX20_04459 at 4663.161 kb on - strand, within MPMX20_04459 at 4663.189 kb on + strand, within MPMX20_04459 at 4663.198 kb on - strand, within MPMX20_04459 at 4663.198 kb on - strand, within MPMX20_04459 at 4663.198 kb on - strand, within MPMX20_04459 at 4663.248 kb on + strand, within MPMX20_04459 at 4663.384 kb on + strand, within MPMX20_04459 at 4663.438 kb on - strand, within MPMX20_04459 at 4663.549 kb on + strand, within MPMX20_04459 at 4663.552 kb on - strand, within MPMX20_04459 at 4663.562 kb on - strand, within MPMX20_04459 at 4663.602 kb on + strand at 4663.610 kb on - strand at 4663.612 kb on + strand at 4663.612 kb on + strand at 4663.617 kb on + strand at 4663.620 kb on - strand at 4663.644 kb on + strand at 4663.644 kb on + strand at 4663.644 kb on + strand at 4663.644 kb on + strand at 4663.647 kb on - strand at 4663.647 kb on - strand at 4663.652 kb on - strand at 4663.652 kb on - strand at 4663.652 kb on - strand at 4663.652 kb on - strand at 4663.652 kb on - strand at 4663.667 kb on + strand at 4663.667 kb on + strand at 4663.667 kb on - strand at 4663.682 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 4,659,927 + MPMX20_04456 0.57 +0.9 4,659,935 - MPMX20_04456 0.58 -1.2 4,659,985 - MPMX20_04456 0.66 +0.6 4,660,002 - MPMX20_04456 0.69 -2.3 4,660,003 - MPMX20_04456 0.69 +0.8 4,660,003 - MPMX20_04456 0.69 -2.1 4,660,003 - MPMX20_04456 0.69 +0.4 4,660,092 - MPMX20_04456 0.84 +0.4 4,660,096 + MPMX20_04456 0.84 -0.2 4,660,104 - MPMX20_04456 0.86 -0.3 4,660,105 + MPMX20_04456 0.86 +1.0 4,660,123 - MPMX20_04456 0.89 -1.4 4,660,123 - MPMX20_04456 0.89 +1.0 4,660,130 - MPMX20_04456 0.90 +4.9 4,660,165 - +1.7 4,660,275 + MPMX20_04457 0.14 +0.4 4,660,295 + MPMX20_04457 0.17 +0.5 4,660,322 - MPMX20_04457 0.21 +0.2 4,660,323 - MPMX20_04457 0.21 -0.3 4,660,356 - MPMX20_04457 0.27 +1.0 4,660,356 - MPMX20_04457 0.27 -0.9 4,660,377 + MPMX20_04457 0.30 -1.6 4,660,385 - MPMX20_04457 0.31 -1.3 4,660,487 - MPMX20_04457 0.48 -0.9 4,660,543 - MPMX20_04457 0.57 -1.1 4,660,551 - MPMX20_04457 0.58 -0.4 4,660,581 - MPMX20_04457 0.63 +0.0 4,660,627 + MPMX20_04457 0.70 +1.6 4,660,765 + +0.2 4,660,765 + -1.1 4,660,768 - -2.1 4,660,772 + +0.2 4,660,773 - -0.2 4,660,780 - -1.8 4,660,890 + +0.8 4,660,898 - -2.1 4,660,898 - -0.1 4,660,922 - +0.9 4,660,949 + -0.3 4,661,076 - MPMX20_04458 0.11 +0.3 4,661,076 - MPMX20_04458 0.11 -0.0 4,661,076 - MPMX20_04458 0.11 +0.0 4,661,076 - MPMX20_04458 0.11 -0.4 4,661,107 - MPMX20_04458 0.12 -0.9 4,661,196 - MPMX20_04458 0.17 -0.0 4,661,198 + MPMX20_04458 0.17 -1.2 4,661,198 + MPMX20_04458 0.17 -0.0 4,661,206 - MPMX20_04458 0.18 -0.9 4,661,235 + MPMX20_04458 0.19 -0.4 4,661,240 + MPMX20_04458 0.19 -3.2 4,661,243 - MPMX20_04458 0.20 +1.0 4,661,288 + MPMX20_04458 0.22 -0.4 4,661,288 + MPMX20_04458 0.22 -0.5 4,661,315 - MPMX20_04458 0.23 -0.8 4,661,315 - MPMX20_04458 0.23 -0.7 4,661,320 - MPMX20_04458 0.24 +1.0 4,661,333 - MPMX20_04458 0.24 -1.3 4,661,382 + MPMX20_04458 0.27 -2.2 4,661,390 - MPMX20_04458 0.27 -1.6 4,661,390 - MPMX20_04458 0.27 -1.1 4,661,460 + MPMX20_04458 0.31 -1.0 4,661,486 + MPMX20_04458 0.32 -1.0 4,661,525 - MPMX20_04458 0.34 -1.5 4,661,573 - MPMX20_04458 0.37 -0.9 4,661,573 - MPMX20_04458 0.37 -1.3 4,661,607 - MPMX20_04458 0.39 +0.6 4,661,680 + MPMX20_04458 0.43 -0.3 4,661,782 - MPMX20_04458 0.48 -0.8 4,661,782 - MPMX20_04458 0.48 -1.4 4,661,782 - MPMX20_04458 0.48 -1.1 4,661,784 + MPMX20_04458 0.48 +1.2 4,661,944 + MPMX20_04458 0.57 -1.7 4,661,958 - MPMX20_04458 0.57 -1.0 4,662,002 + MPMX20_04458 0.60 -0.6 4,662,002 + MPMX20_04458 0.60 -0.0 4,662,083 - MPMX20_04458 0.64 +0.5 4,662,267 - MPMX20_04458 0.74 +3.6 4,662,347 - MPMX20_04458 0.78 +1.1 4,662,367 - MPMX20_04458 0.79 -0.0 4,662,376 + MPMX20_04458 0.79 -1.8 4,662,384 - MPMX20_04458 0.80 -0.1 4,662,436 - MPMX20_04458 0.83 -1.0 4,662,512 + MPMX20_04458 0.87 -0.4 4,662,535 - MPMX20_04458 0.88 +0.6 4,662,535 - MPMX20_04458 0.88 +1.0 4,662,609 + -2.3 4,662,609 + -0.4 4,662,619 + -0.5 4,662,627 - +3.1 4,662,701 + -0.6 4,662,709 - -1.0 4,662,816 + -0.4 4,662,821 + -1.7 4,662,821 + +0.6 4,662,824 - +2.6 4,662,824 - +2.6 4,662,829 - -0.6 4,662,829 - +1.4 4,662,829 - +0.4 4,662,829 - +0.6 4,662,863 + +0.2 4,662,882 - MPMX20_04459 0.10 -0.3 4,662,894 - MPMX20_04459 0.12 -2.1 4,662,929 + MPMX20_04459 0.16 +1.6 4,662,947 - MPMX20_04459 0.18 -0.9 4,662,960 + MPMX20_04459 0.19 +1.0 4,662,960 + MPMX20_04459 0.19 +1.8 4,662,988 + MPMX20_04459 0.23 -1.0 4,663,003 - MPMX20_04459 0.24 -0.0 4,663,006 + MPMX20_04459 0.25 +0.2 4,663,024 + MPMX20_04459 0.27 +0.2 4,663,024 + MPMX20_04459 0.27 +0.2 4,663,024 - MPMX20_04459 0.27 +2.6 4,663,024 - MPMX20_04459 0.27 -0.3 4,663,058 - MPMX20_04459 0.31 +0.7 4,663,075 - MPMX20_04459 0.33 +1.2 4,663,075 - MPMX20_04459 0.33 -1.4 4,663,118 + MPMX20_04459 0.37 -0.9 4,663,141 - MPMX20_04459 0.40 +2.0 4,663,153 + MPMX20_04459 0.41 -0.1 4,663,161 - MPMX20_04459 0.42 -2.6 4,663,189 + MPMX20_04459 0.46 -2.2 4,663,198 - MPMX20_04459 0.47 -0.5 4,663,198 - MPMX20_04459 0.47 -0.6 4,663,198 - MPMX20_04459 0.47 -1.1 4,663,248 + MPMX20_04459 0.52 +0.9 4,663,384 + MPMX20_04459 0.68 -1.9 4,663,438 - MPMX20_04459 0.74 -0.9 4,663,549 + MPMX20_04459 0.87 -2.0 4,663,552 - MPMX20_04459 0.87 -1.4 4,663,562 - MPMX20_04459 0.89 -0.8 4,663,602 + -1.1 4,663,610 - -1.0 4,663,612 + +2.6 4,663,612 + -0.5 4,663,617 + -0.8 4,663,620 - -2.5 4,663,644 + +2.6 4,663,644 + -0.3 4,663,644 + +0.2 4,663,644 + +0.5 4,663,647 - -1.8 4,663,647 - +0.6 4,663,652 - -0.4 4,663,652 - -0.0 4,663,652 - -0.9 4,663,652 - -1.5 4,663,652 - +2.6 4,663,667 + -2.9 4,663,667 + +2.6 4,663,667 - +1.1 4,663,682 + +3.3
Or see this region's nucleotide sequence