Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04458

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04456 and MPMX20_04457 overlap by 4 nucleotidesMPMX20_04457 and MPMX20_04458 are separated by 61 nucleotidesMPMX20_04458 and MPMX20_04459 are separated by 27 nucleotides MPMX20_04456: MPMX20_04456 - Homoserine/homoserine lactone efflux protein, at 4,659,573 to 4,660,193 _04456 MPMX20_04457: MPMX20_04457 - Threonine efflux protein, at 4,660,190 to 4,660,810 _04457 MPMX20_04458: MPMX20_04458 - ATP-dependent DNA helicase RecQ, at 4,660,872 to 4,662,764 _04458 MPMX20_04459: MPMX20_04459 - Phospholipase A1, at 4,662,792 to 4,663,661 _04459 Position (kb) 4660 4661 4662 4663Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4659.927 kb on + strand, within MPMX20_04456at 4659.935 kb on - strand, within MPMX20_04456at 4659.985 kb on - strand, within MPMX20_04456at 4660.002 kb on - strand, within MPMX20_04456at 4660.003 kb on - strand, within MPMX20_04456at 4660.003 kb on - strand, within MPMX20_04456at 4660.003 kb on - strand, within MPMX20_04456at 4660.092 kb on - strand, within MPMX20_04456at 4660.096 kb on + strand, within MPMX20_04456at 4660.104 kb on - strand, within MPMX20_04456at 4660.105 kb on + strand, within MPMX20_04456at 4660.123 kb on - strand, within MPMX20_04456at 4660.123 kb on - strand, within MPMX20_04456at 4660.130 kb on - strand, within MPMX20_04456at 4660.165 kb on - strandat 4660.275 kb on + strand, within MPMX20_04457at 4660.295 kb on + strand, within MPMX20_04457at 4660.322 kb on - strand, within MPMX20_04457at 4660.323 kb on - strand, within MPMX20_04457at 4660.356 kb on - strand, within MPMX20_04457at 4660.356 kb on - strand, within MPMX20_04457at 4660.377 kb on + strand, within MPMX20_04457at 4660.385 kb on - strand, within MPMX20_04457at 4660.487 kb on - strand, within MPMX20_04457at 4660.543 kb on - strand, within MPMX20_04457at 4660.551 kb on - strand, within MPMX20_04457at 4660.581 kb on - strand, within MPMX20_04457at 4660.627 kb on + strand, within MPMX20_04457at 4660.765 kb on + strandat 4660.765 kb on + strandat 4660.768 kb on - strandat 4660.772 kb on + strandat 4660.773 kb on - strandat 4660.780 kb on - strandat 4660.890 kb on + strandat 4660.898 kb on - strandat 4660.898 kb on - strandat 4660.922 kb on - strandat 4660.949 kb on + strandat 4661.076 kb on - strand, within MPMX20_04458at 4661.076 kb on - strand, within MPMX20_04458at 4661.076 kb on - strand, within MPMX20_04458at 4661.076 kb on - strand, within MPMX20_04458at 4661.107 kb on - strand, within MPMX20_04458at 4661.196 kb on - strand, within MPMX20_04458at 4661.198 kb on + strand, within MPMX20_04458at 4661.198 kb on + strand, within MPMX20_04458at 4661.206 kb on - strand, within MPMX20_04458at 4661.235 kb on + strand, within MPMX20_04458at 4661.240 kb on + strand, within MPMX20_04458at 4661.243 kb on - strand, within MPMX20_04458at 4661.288 kb on + strand, within MPMX20_04458at 4661.288 kb on + strand, within MPMX20_04458at 4661.315 kb on - strand, within MPMX20_04458at 4661.315 kb on - strand, within MPMX20_04458at 4661.320 kb on - strand, within MPMX20_04458at 4661.333 kb on - strand, within MPMX20_04458at 4661.382 kb on + strand, within MPMX20_04458at 4661.390 kb on - strand, within MPMX20_04458at 4661.390 kb on - strand, within MPMX20_04458at 4661.460 kb on + strand, within MPMX20_04458at 4661.486 kb on + strand, within MPMX20_04458at 4661.525 kb on - strand, within MPMX20_04458at 4661.573 kb on - strand, within MPMX20_04458at 4661.573 kb on - strand, within MPMX20_04458at 4661.607 kb on - strand, within MPMX20_04458at 4661.680 kb on + strand, within MPMX20_04458at 4661.782 kb on - strand, within MPMX20_04458at 4661.782 kb on - strand, within MPMX20_04458at 4661.782 kb on - strand, within MPMX20_04458at 4661.784 kb on + strand, within MPMX20_04458at 4661.944 kb on + strand, within MPMX20_04458at 4661.958 kb on - strand, within MPMX20_04458at 4662.002 kb on + strand, within MPMX20_04458at 4662.002 kb on + strand, within MPMX20_04458at 4662.083 kb on - strand, within MPMX20_04458at 4662.267 kb on - strand, within MPMX20_04458at 4662.347 kb on - strand, within MPMX20_04458at 4662.367 kb on - strand, within MPMX20_04458at 4662.376 kb on + strand, within MPMX20_04458at 4662.384 kb on - strand, within MPMX20_04458at 4662.436 kb on - strand, within MPMX20_04458at 4662.512 kb on + strand, within MPMX20_04458at 4662.535 kb on - strand, within MPMX20_04458at 4662.535 kb on - strand, within MPMX20_04458at 4662.609 kb on + strandat 4662.609 kb on + strandat 4662.619 kb on + strandat 4662.627 kb on - strandat 4662.701 kb on + strandat 4662.709 kb on - strandat 4662.816 kb on + strandat 4662.821 kb on + strandat 4662.821 kb on + strandat 4662.824 kb on - strandat 4662.824 kb on - strandat 4662.829 kb on - strandat 4662.829 kb on - strandat 4662.829 kb on - strandat 4662.829 kb on - strandat 4662.863 kb on + strandat 4662.882 kb on - strand, within MPMX20_04459at 4662.894 kb on - strand, within MPMX20_04459at 4662.929 kb on + strand, within MPMX20_04459at 4662.947 kb on - strand, within MPMX20_04459at 4662.960 kb on + strand, within MPMX20_04459at 4662.960 kb on + strand, within MPMX20_04459at 4662.988 kb on + strand, within MPMX20_04459at 4663.003 kb on - strand, within MPMX20_04459at 4663.006 kb on + strand, within MPMX20_04459at 4663.024 kb on + strand, within MPMX20_04459at 4663.024 kb on + strand, within MPMX20_04459at 4663.024 kb on - strand, within MPMX20_04459at 4663.024 kb on - strand, within MPMX20_04459at 4663.058 kb on - strand, within MPMX20_04459at 4663.075 kb on - strand, within MPMX20_04459at 4663.075 kb on - strand, within MPMX20_04459at 4663.118 kb on + strand, within MPMX20_04459at 4663.141 kb on - strand, within MPMX20_04459at 4663.153 kb on + strand, within MPMX20_04459at 4663.161 kb on - strand, within MPMX20_04459at 4663.189 kb on + strand, within MPMX20_04459at 4663.198 kb on - strand, within MPMX20_04459at 4663.198 kb on - strand, within MPMX20_04459at 4663.198 kb on - strand, within MPMX20_04459at 4663.248 kb on + strand, within MPMX20_04459at 4663.384 kb on + strand, within MPMX20_04459at 4663.438 kb on - strand, within MPMX20_04459at 4663.549 kb on + strand, within MPMX20_04459at 4663.552 kb on - strand, within MPMX20_04459at 4663.562 kb on - strand, within MPMX20_04459at 4663.602 kb on + strandat 4663.610 kb on - strandat 4663.612 kb on + strandat 4663.612 kb on + strandat 4663.617 kb on + strandat 4663.620 kb on - strandat 4663.644 kb on + strandat 4663.644 kb on + strandat 4663.644 kb on + strandat 4663.644 kb on + strandat 4663.647 kb on - strandat 4663.647 kb on - strandat 4663.652 kb on - strandat 4663.652 kb on - strandat 4663.652 kb on - strandat 4663.652 kb on - strandat 4663.652 kb on - strandat 4663.667 kb on + strandat 4663.667 kb on + strandat 4663.667 kb on - strandat 4663.682 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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4,659,927 + MPMX20_04456 0.57 +0.9
4,659,935 - MPMX20_04456 0.58 -1.2
4,659,985 - MPMX20_04456 0.66 +0.6
4,660,002 - MPMX20_04456 0.69 -2.3
4,660,003 - MPMX20_04456 0.69 +0.8
4,660,003 - MPMX20_04456 0.69 -2.1
4,660,003 - MPMX20_04456 0.69 +0.4
4,660,092 - MPMX20_04456 0.84 +0.4
4,660,096 + MPMX20_04456 0.84 -0.2
4,660,104 - MPMX20_04456 0.86 -0.3
4,660,105 + MPMX20_04456 0.86 +1.0
4,660,123 - MPMX20_04456 0.89 -1.4
4,660,123 - MPMX20_04456 0.89 +1.0
4,660,130 - MPMX20_04456 0.90 +4.9
4,660,165 - +1.7
4,660,275 + MPMX20_04457 0.14 +0.4
4,660,295 + MPMX20_04457 0.17 +0.5
4,660,322 - MPMX20_04457 0.21 +0.2
4,660,323 - MPMX20_04457 0.21 -0.3
4,660,356 - MPMX20_04457 0.27 +1.0
4,660,356 - MPMX20_04457 0.27 -0.9
4,660,377 + MPMX20_04457 0.30 -1.6
4,660,385 - MPMX20_04457 0.31 -1.3
4,660,487 - MPMX20_04457 0.48 -0.9
4,660,543 - MPMX20_04457 0.57 -1.1
4,660,551 - MPMX20_04457 0.58 -0.4
4,660,581 - MPMX20_04457 0.63 +0.0
4,660,627 + MPMX20_04457 0.70 +1.6
4,660,765 + +0.2
4,660,765 + -1.1
4,660,768 - -2.1
4,660,772 + +0.2
4,660,773 - -0.2
4,660,780 - -1.8
4,660,890 + +0.8
4,660,898 - -2.1
4,660,898 - -0.1
4,660,922 - +0.9
4,660,949 + -0.3
4,661,076 - MPMX20_04458 0.11 +0.3
4,661,076 - MPMX20_04458 0.11 -0.0
4,661,076 - MPMX20_04458 0.11 +0.0
4,661,076 - MPMX20_04458 0.11 -0.4
4,661,107 - MPMX20_04458 0.12 -0.9
4,661,196 - MPMX20_04458 0.17 -0.0
4,661,198 + MPMX20_04458 0.17 -1.2
4,661,198 + MPMX20_04458 0.17 -0.0
4,661,206 - MPMX20_04458 0.18 -0.9
4,661,235 + MPMX20_04458 0.19 -0.4
4,661,240 + MPMX20_04458 0.19 -3.2
4,661,243 - MPMX20_04458 0.20 +1.0
4,661,288 + MPMX20_04458 0.22 -0.4
4,661,288 + MPMX20_04458 0.22 -0.5
4,661,315 - MPMX20_04458 0.23 -0.8
4,661,315 - MPMX20_04458 0.23 -0.7
4,661,320 - MPMX20_04458 0.24 +1.0
4,661,333 - MPMX20_04458 0.24 -1.3
4,661,382 + MPMX20_04458 0.27 -2.2
4,661,390 - MPMX20_04458 0.27 -1.6
4,661,390 - MPMX20_04458 0.27 -1.1
4,661,460 + MPMX20_04458 0.31 -1.0
4,661,486 + MPMX20_04458 0.32 -1.0
4,661,525 - MPMX20_04458 0.34 -1.5
4,661,573 - MPMX20_04458 0.37 -0.9
4,661,573 - MPMX20_04458 0.37 -1.3
4,661,607 - MPMX20_04458 0.39 +0.6
4,661,680 + MPMX20_04458 0.43 -0.3
4,661,782 - MPMX20_04458 0.48 -0.8
4,661,782 - MPMX20_04458 0.48 -1.4
4,661,782 - MPMX20_04458 0.48 -1.1
4,661,784 + MPMX20_04458 0.48 +1.2
4,661,944 + MPMX20_04458 0.57 -1.7
4,661,958 - MPMX20_04458 0.57 -1.0
4,662,002 + MPMX20_04458 0.60 -0.6
4,662,002 + MPMX20_04458 0.60 -0.0
4,662,083 - MPMX20_04458 0.64 +0.5
4,662,267 - MPMX20_04458 0.74 +3.6
4,662,347 - MPMX20_04458 0.78 +1.1
4,662,367 - MPMX20_04458 0.79 -0.0
4,662,376 + MPMX20_04458 0.79 -1.8
4,662,384 - MPMX20_04458 0.80 -0.1
4,662,436 - MPMX20_04458 0.83 -1.0
4,662,512 + MPMX20_04458 0.87 -0.4
4,662,535 - MPMX20_04458 0.88 +0.6
4,662,535 - MPMX20_04458 0.88 +1.0
4,662,609 + -2.3
4,662,609 + -0.4
4,662,619 + -0.5
4,662,627 - +3.1
4,662,701 + -0.6
4,662,709 - -1.0
4,662,816 + -0.4
4,662,821 + -1.7
4,662,821 + +0.6
4,662,824 - +2.6
4,662,824 - +2.6
4,662,829 - -0.6
4,662,829 - +1.4
4,662,829 - +0.4
4,662,829 - +0.6
4,662,863 + +0.2
4,662,882 - MPMX20_04459 0.10 -0.3
4,662,894 - MPMX20_04459 0.12 -2.1
4,662,929 + MPMX20_04459 0.16 +1.6
4,662,947 - MPMX20_04459 0.18 -0.9
4,662,960 + MPMX20_04459 0.19 +1.0
4,662,960 + MPMX20_04459 0.19 +1.8
4,662,988 + MPMX20_04459 0.23 -1.0
4,663,003 - MPMX20_04459 0.24 -0.0
4,663,006 + MPMX20_04459 0.25 +0.2
4,663,024 + MPMX20_04459 0.27 +0.2
4,663,024 + MPMX20_04459 0.27 +0.2
4,663,024 - MPMX20_04459 0.27 +2.6
4,663,024 - MPMX20_04459 0.27 -0.3
4,663,058 - MPMX20_04459 0.31 +0.7
4,663,075 - MPMX20_04459 0.33 +1.2
4,663,075 - MPMX20_04459 0.33 -1.4
4,663,118 + MPMX20_04459 0.37 -0.9
4,663,141 - MPMX20_04459 0.40 +2.0
4,663,153 + MPMX20_04459 0.41 -0.1
4,663,161 - MPMX20_04459 0.42 -2.6
4,663,189 + MPMX20_04459 0.46 -2.2
4,663,198 - MPMX20_04459 0.47 -0.5
4,663,198 - MPMX20_04459 0.47 -0.6
4,663,198 - MPMX20_04459 0.47 -1.1
4,663,248 + MPMX20_04459 0.52 +0.9
4,663,384 + MPMX20_04459 0.68 -1.9
4,663,438 - MPMX20_04459 0.74 -0.9
4,663,549 + MPMX20_04459 0.87 -2.0
4,663,552 - MPMX20_04459 0.87 -1.4
4,663,562 - MPMX20_04459 0.89 -0.8
4,663,602 + -1.1
4,663,610 - -1.0
4,663,612 + +2.6
4,663,612 + -0.5
4,663,617 + -0.8
4,663,620 - -2.5
4,663,644 + +2.6
4,663,644 + -0.3
4,663,644 + +0.2
4,663,644 + +0.5
4,663,647 - -1.8
4,663,647 - +0.6
4,663,652 - -0.4
4,663,652 - -0.0
4,663,652 - -0.9
4,663,652 - -1.5
4,663,652 - +2.6
4,663,667 + -2.9
4,663,667 + +2.6
4,663,667 - +1.1
4,663,682 + +3.3

Or see this region's nucleotide sequence