Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03929 and MPMX20_03930 overlap by 4 nucleotides MPMX20_03930 and MPMX20_03931 overlap by 4 nucleotides MPMX20_03931 and MPMX20_03932 are separated by 98 nucleotides MPMX20_03932 and MPMX20_03933 overlap by 23 nucleotides
MPMX20_03929: MPMX20_03929 - hypothetical protein, at 4,135,600 to 4,136,307
_03929
MPMX20_03930: MPMX20_03930 - hypothetical protein, at 4,136,304 to 4,136,810
_03930
MPMX20_03931: MPMX20_03931 - hypothetical protein, at 4,136,807 to 4,137,259
_03931
MPMX20_03932: MPMX20_03932 - hypothetical protein, at 4,137,358 to 4,137,555
_03932
MPMX20_03933: MPMX20_03933 - hypothetical protein, at 4,137,533 to 4,138,261
_03933
Position (kb)
4136
4137
4138 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4135.853 kb on + strand, within MPMX20_03929 at 4135.853 kb on + strand, within MPMX20_03929 at 4135.853 kb on + strand, within MPMX20_03929 at 4135.861 kb on - strand, within MPMX20_03929 at 4135.880 kb on - strand, within MPMX20_03929 at 4135.884 kb on + strand, within MPMX20_03929 at 4135.892 kb on - strand, within MPMX20_03929 at 4135.892 kb on - strand, within MPMX20_03929 at 4136.003 kb on - strand, within MPMX20_03929 at 4136.097 kb on - strand, within MPMX20_03929 at 4136.124 kb on + strand, within MPMX20_03929 at 4136.135 kb on + strand, within MPMX20_03929 at 4136.243 kb on + strand at 4136.246 kb on - strand at 4136.300 kb on - strand at 4136.336 kb on + strand at 4136.358 kb on + strand, within MPMX20_03930 at 4136.368 kb on + strand, within MPMX20_03930 at 4136.376 kb on - strand, within MPMX20_03930 at 4136.376 kb on - strand, within MPMX20_03930 at 4136.447 kb on + strand, within MPMX20_03930 at 4136.549 kb on + strand, within MPMX20_03930 at 4136.560 kb on - strand, within MPMX20_03930 at 4136.637 kb on + strand, within MPMX20_03930 at 4136.637 kb on + strand, within MPMX20_03930 at 4136.637 kb on + strand, within MPMX20_03930 at 4136.637 kb on + strand, within MPMX20_03930 at 4136.637 kb on + strand, within MPMX20_03930 at 4136.645 kb on - strand, within MPMX20_03930 at 4136.645 kb on - strand, within MPMX20_03930 at 4136.645 kb on - strand, within MPMX20_03930 at 4136.645 kb on - strand, within MPMX20_03930 at 4136.645 kb on - strand, within MPMX20_03930 at 4136.694 kb on - strand, within MPMX20_03930 at 4136.694 kb on - strand, within MPMX20_03930 at 4136.754 kb on + strand, within MPMX20_03930 at 4136.798 kb on + strand at 4136.857 kb on + strand, within MPMX20_03931 at 4136.900 kb on + strand, within MPMX20_03931 at 4136.916 kb on + strand, within MPMX20_03931 at 4136.934 kb on - strand, within MPMX20_03931 at 4136.944 kb on + strand, within MPMX20_03931 at 4136.944 kb on + strand, within MPMX20_03931 at 4136.948 kb on + strand, within MPMX20_03931 at 4136.952 kb on - strand, within MPMX20_03931 at 4136.982 kb on + strand, within MPMX20_03931 at 4137.057 kb on - strand, within MPMX20_03931 at 4137.093 kb on + strand, within MPMX20_03931 at 4137.101 kb on - strand, within MPMX20_03931 at 4137.127 kb on + strand, within MPMX20_03931 at 4137.135 kb on - strand, within MPMX20_03931 at 4137.160 kb on - strand, within MPMX20_03931 at 4137.187 kb on + strand, within MPMX20_03931 at 4137.188 kb on + strand, within MPMX20_03931 at 4137.193 kb on + strand, within MPMX20_03931 at 4137.193 kb on + strand, within MPMX20_03931 at 4137.196 kb on - strand, within MPMX20_03931 at 4137.198 kb on + strand, within MPMX20_03931 at 4137.201 kb on - strand, within MPMX20_03931 at 4137.298 kb on - strand at 4137.300 kb on + strand at 4137.308 kb on - strand at 4137.313 kb on - strand at 4137.331 kb on - strand at 4137.346 kb on - strand at 4137.356 kb on + strand at 4137.356 kb on + strand at 4137.356 kb on + strand at 4137.356 kb on + strand at 4137.356 kb on + strand at 4137.356 kb on + strand at 4137.356 kb on + strand at 4137.364 kb on - strand at 4137.364 kb on - strand at 4137.364 kb on - strand at 4137.364 kb on - strand at 4137.509 kb on + strand, within MPMX20_03932 at 4137.514 kb on - strand, within MPMX20_03932 at 4137.519 kb on + strand, within MPMX20_03932 at 4137.527 kb on - strand, within MPMX20_03932 at 4137.527 kb on - strand, within MPMX20_03932 at 4137.570 kb on - strand at 4137.584 kb on - strand at 4137.589 kb on + strand at 4137.599 kb on - strand at 4137.609 kb on + strand, within MPMX20_03933 at 4137.772 kb on - strand, within MPMX20_03933 at 4137.799 kb on + strand, within MPMX20_03933 at 4137.805 kb on - strand, within MPMX20_03933 at 4137.807 kb on - strand, within MPMX20_03933 at 4137.823 kb on + strand, within MPMX20_03933 at 4137.858 kb on + strand, within MPMX20_03933 at 4137.858 kb on + strand, within MPMX20_03933 at 4137.858 kb on + strand, within MPMX20_03933 at 4137.858 kb on + strand, within MPMX20_03933 at 4137.858 kb on + strand, within MPMX20_03933 at 4137.863 kb on + strand, within MPMX20_03933 at 4137.866 kb on - strand, within MPMX20_03933 at 4137.866 kb on - strand, within MPMX20_03933 at 4137.866 kb on - strand, within MPMX20_03933 at 4137.871 kb on - strand, within MPMX20_03933 at 4137.921 kb on + strand, within MPMX20_03933 at 4137.929 kb on - strand, within MPMX20_03933 at 4137.960 kb on + strand, within MPMX20_03933 at 4137.960 kb on + strand, within MPMX20_03933 at 4137.968 kb on - strand, within MPMX20_03933 at 4137.979 kb on + strand, within MPMX20_03933 at 4138.028 kb on - strand, within MPMX20_03933 at 4138.028 kb on - strand, within MPMX20_03933 at 4138.028 kb on - strand, within MPMX20_03933 at 4138.028 kb on - strand, within MPMX20_03933 at 4138.046 kb on + strand, within MPMX20_03933 at 4138.054 kb on - strand, within MPMX20_03933 at 4138.081 kb on - strand, within MPMX20_03933 at 4138.086 kb on + strand, within MPMX20_03933 at 4138.092 kb on + strand, within MPMX20_03933 at 4138.231 kb on + strand at 4138.233 kb on + strand at 4138.239 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 4,135,853 + MPMX20_03929 0.36 +0.6 4,135,853 + MPMX20_03929 0.36 +0.5 4,135,853 + MPMX20_03929 0.36 +0.8 4,135,861 - MPMX20_03929 0.37 -0.5 4,135,880 - MPMX20_03929 0.40 -1.2 4,135,884 + MPMX20_03929 0.40 -0.3 4,135,892 - MPMX20_03929 0.41 -2.1 4,135,892 - MPMX20_03929 0.41 -1.1 4,136,003 - MPMX20_03929 0.57 +1.5 4,136,097 - MPMX20_03929 0.70 +1.5 4,136,124 + MPMX20_03929 0.74 +1.9 4,136,135 + MPMX20_03929 0.76 +0.6 4,136,243 + -0.7 4,136,246 - -0.8 4,136,300 - -1.2 4,136,336 + -1.4 4,136,358 + MPMX20_03930 0.11 +0.9 4,136,368 + MPMX20_03930 0.13 -2.1 4,136,376 - MPMX20_03930 0.14 -0.6 4,136,376 - MPMX20_03930 0.14 -1.8 4,136,447 + MPMX20_03930 0.28 +0.2 4,136,549 + MPMX20_03930 0.48 +1.4 4,136,560 - MPMX20_03930 0.50 -0.3 4,136,637 + MPMX20_03930 0.66 -1.4 4,136,637 + MPMX20_03930 0.66 -0.3 4,136,637 + MPMX20_03930 0.66 -1.2 4,136,637 + MPMX20_03930 0.66 -0.3 4,136,637 + MPMX20_03930 0.66 +0.3 4,136,645 - MPMX20_03930 0.67 -0.3 4,136,645 - MPMX20_03930 0.67 +0.5 4,136,645 - MPMX20_03930 0.67 +1.5 4,136,645 - MPMX20_03930 0.67 +0.5 4,136,645 - MPMX20_03930 0.67 -1.9 4,136,694 - MPMX20_03930 0.77 +0.9 4,136,694 - MPMX20_03930 0.77 +0.9 4,136,754 + MPMX20_03930 0.89 -2.5 4,136,798 + -0.4 4,136,857 + MPMX20_03931 0.11 -0.2 4,136,900 + MPMX20_03931 0.21 +1.5 4,136,916 + MPMX20_03931 0.24 -1.9 4,136,934 - MPMX20_03931 0.28 -0.1 4,136,944 + MPMX20_03931 0.30 -0.7 4,136,944 + MPMX20_03931 0.30 -0.3 4,136,948 + MPMX20_03931 0.31 -1.5 4,136,952 - MPMX20_03931 0.32 +0.5 4,136,982 + MPMX20_03931 0.39 -1.7 4,137,057 - MPMX20_03931 0.55 -0.1 4,137,093 + MPMX20_03931 0.63 +0.7 4,137,101 - MPMX20_03931 0.65 +1.1 4,137,127 + MPMX20_03931 0.71 +0.6 4,137,135 - MPMX20_03931 0.72 -2.1 4,137,160 - MPMX20_03931 0.78 -1.7 4,137,187 + MPMX20_03931 0.84 -0.5 4,137,188 + MPMX20_03931 0.84 -0.8 4,137,193 + MPMX20_03931 0.85 -1.1 4,137,193 + MPMX20_03931 0.85 -0.5 4,137,196 - MPMX20_03931 0.86 -1.2 4,137,198 + MPMX20_03931 0.86 -2.7 4,137,201 - MPMX20_03931 0.87 +0.2 4,137,298 - -3.7 4,137,300 + -1.8 4,137,308 - -2.0 4,137,313 - -2.5 4,137,331 - -3.1 4,137,346 - -0.1 4,137,356 + -1.2 4,137,356 + -1.0 4,137,356 + -0.3 4,137,356 + -1.4 4,137,356 + -2.2 4,137,356 + +0.0 4,137,356 + -1.1 4,137,364 - -0.2 4,137,364 - -1.5 4,137,364 - -0.1 4,137,364 - -0.3 4,137,509 + MPMX20_03932 0.76 -0.3 4,137,514 - MPMX20_03932 0.79 -1.9 4,137,519 + MPMX20_03932 0.81 +1.0 4,137,527 - MPMX20_03932 0.85 -0.8 4,137,527 - MPMX20_03932 0.85 +0.9 4,137,570 - -0.3 4,137,584 - -2.8 4,137,589 + +0.2 4,137,599 - -1.4 4,137,609 + MPMX20_03933 0.10 +1.8 4,137,772 - MPMX20_03933 0.33 -0.9 4,137,799 + MPMX20_03933 0.36 -1.3 4,137,805 - MPMX20_03933 0.37 +0.4 4,137,807 - MPMX20_03933 0.38 +0.2 4,137,823 + MPMX20_03933 0.40 +0.3 4,137,858 + MPMX20_03933 0.45 -1.0 4,137,858 + MPMX20_03933 0.45 -0.7 4,137,858 + MPMX20_03933 0.45 -2.0 4,137,858 + MPMX20_03933 0.45 +1.5 4,137,858 + MPMX20_03933 0.45 -1.8 4,137,863 + MPMX20_03933 0.45 +0.0 4,137,866 - MPMX20_03933 0.46 -2.7 4,137,866 - MPMX20_03933 0.46 +0.2 4,137,866 - MPMX20_03933 0.46 -0.0 4,137,871 - MPMX20_03933 0.46 -1.1 4,137,921 + MPMX20_03933 0.53 -1.0 4,137,929 - MPMX20_03933 0.54 +1.2 4,137,960 + MPMX20_03933 0.59 +0.4 4,137,960 + MPMX20_03933 0.59 -1.0 4,137,968 - MPMX20_03933 0.60 -0.5 4,137,979 + MPMX20_03933 0.61 +1.5 4,138,028 - MPMX20_03933 0.68 -0.1 4,138,028 - MPMX20_03933 0.68 -1.5 4,138,028 - MPMX20_03933 0.68 +0.6 4,138,028 - MPMX20_03933 0.68 -2.0 4,138,046 + MPMX20_03933 0.70 -1.6 4,138,054 - MPMX20_03933 0.71 -1.0 4,138,081 - MPMX20_03933 0.75 +0.3 4,138,086 + MPMX20_03933 0.76 -0.8 4,138,092 + MPMX20_03933 0.77 -1.6 4,138,231 + -1.2 4,138,233 + +0.2 4,138,239 - -1.5
Or see this region's nucleotide sequence