Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03902

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03901 and MPMX20_03902 are separated by 9 nucleotidesMPMX20_03902 and MPMX20_03903 are separated by 9 nucleotidesMPMX20_03903 and MPMX20_03904 overlap by 1 nucleotides MPMX20_03901: MPMX20_03901 - Urease subunit alpha, at 4,110,602 to 4,112,305 _03901 MPMX20_03902: MPMX20_03902 - Urease accessory protein UreE, at 4,112,315 to 4,112,779 _03902 MPMX20_03903: MPMX20_03903 - hypothetical protein, at 4,112,789 to 4,113,328 _03903 MPMX20_03904: MPMX20_03904 - Urease accessory protein UreF, at 4,113,328 to 4,114,002 _03904 Position (kb) 4112 4113Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4111.331 kb on + strand, within MPMX20_03901at 4111.331 kb on + strand, within MPMX20_03901at 4111.341 kb on + strand, within MPMX20_03901at 4111.411 kb on - strand, within MPMX20_03901at 4111.419 kb on + strand, within MPMX20_03901at 4111.460 kb on - strand, within MPMX20_03901at 4111.488 kb on + strand, within MPMX20_03901at 4111.494 kb on - strand, within MPMX20_03901at 4111.495 kb on - strand, within MPMX20_03901at 4111.505 kb on - strand, within MPMX20_03901at 4111.505 kb on - strand, within MPMX20_03901at 4111.507 kb on + strand, within MPMX20_03901at 4111.507 kb on + strand, within MPMX20_03901at 4111.507 kb on + strand, within MPMX20_03901at 4111.515 kb on - strand, within MPMX20_03901at 4111.515 kb on - strand, within MPMX20_03901at 4111.748 kb on - strand, within MPMX20_03901at 4111.761 kb on - strand, within MPMX20_03901at 4111.777 kb on - strand, within MPMX20_03901at 4111.835 kb on + strand, within MPMX20_03901at 4111.835 kb on + strand, within MPMX20_03901at 4111.835 kb on + strand, within MPMX20_03901at 4111.843 kb on - strand, within MPMX20_03901at 4111.843 kb on - strand, within MPMX20_03901at 4111.909 kb on - strand, within MPMX20_03901at 4112.112 kb on + strand, within MPMX20_03901at 4112.146 kb on + strandat 4112.177 kb on + strandat 4112.189 kb on + strandat 4112.189 kb on - strandat 4112.228 kb on - strandat 4112.307 kb on - strandat 4112.322 kb on + strandat 4112.334 kb on + strandat 4112.342 kb on - strandat 4112.356 kb on - strandat 4112.637 kb on + strand, within MPMX20_03902at 4112.702 kb on - strand, within MPMX20_03902at 4112.734 kb on - strandat 4112.748 kb on + strandat 4112.766 kb on - strandat 4112.855 kb on + strand, within MPMX20_03903at 4112.947 kb on + strand, within MPMX20_03903at 4112.993 kb on - strand, within MPMX20_03903at 4113.106 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.153 kb on + strand, within MPMX20_03903at 4113.155 kb on + strand, within MPMX20_03903at 4113.161 kb on - strand, within MPMX20_03903at 4113.161 kb on - strand, within MPMX20_03903at 4113.161 kb on - strand, within MPMX20_03903at 4113.161 kb on - strand, within MPMX20_03903at 4113.161 kb on - strand, within MPMX20_03903at 4113.175 kb on - strand, within MPMX20_03903at 4113.213 kb on + strand, within MPMX20_03903at 4113.221 kb on - strand, within MPMX20_03903at 4113.221 kb on - strand, within MPMX20_03903at 4113.288 kb on - strandat 4113.366 kb on + strandat 4113.409 kb on + strand, within MPMX20_03904at 4113.417 kb on - strand, within MPMX20_03904at 4113.446 kb on + strand, within MPMX20_03904at 4113.446 kb on + strand, within MPMX20_03904at 4113.484 kb on + strand, within MPMX20_03904at 4113.490 kb on + strand, within MPMX20_03904at 4113.490 kb on + strand, within MPMX20_03904at 4113.570 kb on + strand, within MPMX20_03904at 4113.583 kb on + strand, within MPMX20_03904at 4113.583 kb on + strand, within MPMX20_03904at 4113.593 kb on + strand, within MPMX20_03904at 4113.614 kb on + strand, within MPMX20_03904at 4113.648 kb on - strand, within MPMX20_03904at 4113.654 kb on + strand, within MPMX20_03904at 4113.675 kb on + strand, within MPMX20_03904at 4113.685 kb on - strand, within MPMX20_03904at 4113.722 kb on - strand, within MPMX20_03904at 4113.726 kb on + strand, within MPMX20_03904at 4113.732 kb on + strand, within MPMX20_03904at 4113.764 kb on + strand, within MPMX20_03904at 4113.769 kb on + strand, within MPMX20_03904at 4113.776 kb on + strand, within MPMX20_03904

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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4,111,331 + MPMX20_03901 0.43 +0.1
4,111,331 + MPMX20_03901 0.43 -0.5
4,111,341 + MPMX20_03901 0.43 -0.7
4,111,411 - MPMX20_03901 0.47 +0.7
4,111,419 + MPMX20_03901 0.48 +0.0
4,111,460 - MPMX20_03901 0.50 -0.3
4,111,488 + MPMX20_03901 0.52 +2.5
4,111,494 - MPMX20_03901 0.52 +0.5
4,111,495 - MPMX20_03901 0.52 +0.6
4,111,505 - MPMX20_03901 0.53 -1.8
4,111,505 - MPMX20_03901 0.53 -1.9
4,111,507 + MPMX20_03901 0.53 +0.5
4,111,507 + MPMX20_03901 0.53 +1.3
4,111,507 + MPMX20_03901 0.53 -0.8
4,111,515 - MPMX20_03901 0.54 -0.3
4,111,515 - MPMX20_03901 0.54 -1.5
4,111,748 - MPMX20_03901 0.67 -2.1
4,111,761 - MPMX20_03901 0.68 -0.1
4,111,777 - MPMX20_03901 0.69 +1.2
4,111,835 + MPMX20_03901 0.72 +0.9
4,111,835 + MPMX20_03901 0.72 -2.7
4,111,835 + MPMX20_03901 0.72 +0.0
4,111,843 - MPMX20_03901 0.73 +0.9
4,111,843 - MPMX20_03901 0.73 +0.8
4,111,909 - MPMX20_03901 0.77 -2.4
4,112,112 + MPMX20_03901 0.89 -1.9
4,112,146 + +3.5
4,112,177 + +1.5
4,112,189 + +1.2
4,112,189 - -0.8
4,112,228 - -0.5
4,112,307 - -0.1
4,112,322 + -0.5
4,112,334 + +1.6
4,112,342 - -2.3
4,112,356 - +0.0
4,112,637 + MPMX20_03902 0.69 -1.1
4,112,702 - MPMX20_03902 0.83 -1.2
4,112,734 - -0.1
4,112,748 + -0.4
4,112,766 - -2.5
4,112,855 + MPMX20_03903 0.12 +1.8
4,112,947 + MPMX20_03903 0.29 -0.4
4,112,993 - MPMX20_03903 0.38 +0.5
4,113,106 + MPMX20_03903 0.59 -2.4
4,113,153 + MPMX20_03903 0.67 -0.3
4,113,153 + MPMX20_03903 0.67 -2.3
4,113,153 + MPMX20_03903 0.67 +0.7
4,113,153 + MPMX20_03903 0.67 +0.5
4,113,153 + MPMX20_03903 0.67 -0.1
4,113,153 + MPMX20_03903 0.67 +2.2
4,113,153 + MPMX20_03903 0.67 -0.8
4,113,153 + MPMX20_03903 0.67 +0.2
4,113,153 + MPMX20_03903 0.67 -3.1
4,113,153 + MPMX20_03903 0.67 -0.5
4,113,155 + MPMX20_03903 0.68 +3.7
4,113,161 - MPMX20_03903 0.69 +0.6
4,113,161 - MPMX20_03903 0.69 +0.3
4,113,161 - MPMX20_03903 0.69 +0.0
4,113,161 - MPMX20_03903 0.69 -2.5
4,113,161 - MPMX20_03903 0.69 +0.7
4,113,175 - MPMX20_03903 0.71 -1.6
4,113,213 + MPMX20_03903 0.79 -0.4
4,113,221 - MPMX20_03903 0.80 +1.1
4,113,221 - MPMX20_03903 0.80 +0.7
4,113,288 - +0.2
4,113,366 + -0.7
4,113,409 + MPMX20_03904 0.12 -1.2
4,113,417 - MPMX20_03904 0.13 -0.8
4,113,446 + MPMX20_03904 0.17 -0.8
4,113,446 + MPMX20_03904 0.17 -0.8
4,113,484 + MPMX20_03904 0.23 -1.0
4,113,490 + MPMX20_03904 0.24 -2.2
4,113,490 + MPMX20_03904 0.24 -0.2
4,113,570 + MPMX20_03904 0.36 +1.1
4,113,583 + MPMX20_03904 0.38 +1.3
4,113,583 + MPMX20_03904 0.38 +0.5
4,113,593 + MPMX20_03904 0.39 +1.1
4,113,614 + MPMX20_03904 0.42 +0.8
4,113,648 - MPMX20_03904 0.47 +0.8
4,113,654 + MPMX20_03904 0.48 +3.5
4,113,675 + MPMX20_03904 0.51 -0.7
4,113,685 - MPMX20_03904 0.53 +1.5
4,113,722 - MPMX20_03904 0.58 +0.6
4,113,726 + MPMX20_03904 0.59 -1.7
4,113,732 + MPMX20_03904 0.60 -1.4
4,113,764 + MPMX20_03904 0.65 -0.1
4,113,769 + MPMX20_03904 0.65 -1.1
4,113,776 + MPMX20_03904 0.66 +0.5

Or see this region's nucleotide sequence