Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03842 and MPMX20_03843 are separated by 160 nucleotides MPMX20_03843 and MPMX20_03844 are separated by 80 nucleotides MPMX20_03844 and MPMX20_03845 are separated by 244 nucleotides
MPMX20_03842: MPMX20_03842 - Disulfide-bond oxidoreductase YghU, at 4,048,230 to 4,049,099
_03842
MPMX20_03843: MPMX20_03843 - hypothetical protein, at 4,049,260 to 4,049,592
_03843
MPMX20_03844: MPMX20_03844 - hypothetical protein, at 4,049,673 to 4,051,220
_03844
MPMX20_03845: MPMX20_03845 - L-glyceraldehyde 3-phosphate reductase, at 4,051,465 to 4,052,505
_03845
Position (kb)
4049
4050
4051
4052 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4048.747 kb on - strand, within MPMX20_03842 at 4048.763 kb on - strand, within MPMX20_03842 at 4048.845 kb on - strand, within MPMX20_03842 at 4048.850 kb on - strand, within MPMX20_03842 at 4048.890 kb on + strand, within MPMX20_03842 at 4048.890 kb on + strand, within MPMX20_03842 at 4048.898 kb on - strand, within MPMX20_03842 at 4048.904 kb on + strand, within MPMX20_03842 at 4048.912 kb on - strand, within MPMX20_03842 at 4048.983 kb on + strand, within MPMX20_03842 at 4049.081 kb on + strand at 4049.325 kb on + strand, within MPMX20_03843 at 4049.454 kb on + strand, within MPMX20_03843 at 4049.454 kb on + strand, within MPMX20_03843 at 4049.462 kb on - strand, within MPMX20_03843 at 4049.462 kb on - strand, within MPMX20_03843 at 4049.462 kb on - strand, within MPMX20_03843 at 4049.480 kb on - strand, within MPMX20_03843 at 4049.486 kb on + strand, within MPMX20_03843 at 4049.486 kb on + strand, within MPMX20_03843 at 4049.521 kb on + strand, within MPMX20_03843 at 4049.529 kb on - strand, within MPMX20_03843 at 4049.560 kb on - strand at 4049.659 kb on + strand at 4049.754 kb on - strand at 4049.754 kb on - strand at 4049.754 kb on - strand at 4049.778 kb on - strand at 4049.840 kb on + strand, within MPMX20_03844 at 4049.840 kb on + strand, within MPMX20_03844 at 4049.848 kb on - strand, within MPMX20_03844 at 4049.945 kb on + strand, within MPMX20_03844 at 4050.001 kb on + strand, within MPMX20_03844 at 4050.088 kb on + strand, within MPMX20_03844 at 4050.165 kb on + strand, within MPMX20_03844 at 4050.167 kb on + strand, within MPMX20_03844 at 4050.204 kb on - strand, within MPMX20_03844 at 4050.255 kb on + strand, within MPMX20_03844 at 4050.255 kb on + strand, within MPMX20_03844 at 4050.291 kb on + strand, within MPMX20_03844 at 4050.294 kb on + strand, within MPMX20_03844 at 4050.302 kb on + strand, within MPMX20_03844 at 4050.302 kb on + strand, within MPMX20_03844 at 4050.302 kb on + strand, within MPMX20_03844 at 4050.310 kb on - strand, within MPMX20_03844 at 4050.336 kb on + strand, within MPMX20_03844 at 4050.354 kb on + strand, within MPMX20_03844 at 4050.389 kb on - strand, within MPMX20_03844 at 4050.427 kb on - strand, within MPMX20_03844 at 4050.429 kb on + strand, within MPMX20_03844 at 4050.430 kb on - strand, within MPMX20_03844 at 4050.460 kb on + strand, within MPMX20_03844 at 4050.482 kb on + strand, within MPMX20_03844 at 4050.528 kb on + strand, within MPMX20_03844 at 4050.593 kb on + strand, within MPMX20_03844 at 4050.604 kb on + strand, within MPMX20_03844 at 4050.612 kb on - strand, within MPMX20_03844 at 4050.621 kb on - strand, within MPMX20_03844 at 4050.675 kb on + strand, within MPMX20_03844 at 4050.675 kb on + strand, within MPMX20_03844 at 4050.683 kb on - strand, within MPMX20_03844 at 4050.683 kb on - strand, within MPMX20_03844 at 4050.686 kb on + strand, within MPMX20_03844 at 4050.694 kb on - strand, within MPMX20_03844 at 4050.701 kb on - strand, within MPMX20_03844 at 4050.720 kb on + strand, within MPMX20_03844 at 4050.747 kb on - strand, within MPMX20_03844 at 4050.753 kb on + strand, within MPMX20_03844 at 4050.764 kb on + strand, within MPMX20_03844 at 4050.766 kb on - strand, within MPMX20_03844 at 4050.766 kb on - strand, within MPMX20_03844 at 4050.800 kb on - strand, within MPMX20_03844 at 4050.803 kb on - strand, within MPMX20_03844 at 4050.807 kb on - strand, within MPMX20_03844 at 4050.832 kb on + strand, within MPMX20_03844 at 4050.840 kb on - strand, within MPMX20_03844 at 4050.840 kb on - strand, within MPMX20_03844 at 4050.854 kb on - strand, within MPMX20_03844 at 4050.873 kb on - strand, within MPMX20_03844 at 4050.899 kb on + strand, within MPMX20_03844 at 4050.899 kb on + strand, within MPMX20_03844 at 4050.899 kb on + strand, within MPMX20_03844 at 4050.899 kb on + strand, within MPMX20_03844 at 4050.945 kb on + strand, within MPMX20_03844 at 4051.042 kb on + strand, within MPMX20_03844 at 4051.042 kb on + strand, within MPMX20_03844 at 4051.042 kb on + strand, within MPMX20_03844 at 4051.042 kb on + strand, within MPMX20_03844 at 4051.050 kb on - strand, within MPMX20_03844 at 4051.050 kb on - strand, within MPMX20_03844 at 4051.050 kb on - strand, within MPMX20_03844 at 4051.064 kb on - strand, within MPMX20_03844 at 4051.064 kb on - strand, within MPMX20_03844 at 4051.064 kb on - strand, within MPMX20_03844 at 4051.091 kb on + strand at 4051.120 kb on + strand at 4051.128 kb on - strand at 4051.129 kb on + strand at 4051.136 kb on + strand at 4051.240 kb on + strand at 4051.267 kb on - strand at 4051.329 kb on + strand at 4051.386 kb on - strand at 4051.413 kb on + strand at 4051.461 kb on - strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.476 kb on + strand at 4051.484 kb on - strand at 4051.484 kb on - strand at 4051.484 kb on - strand at 4051.484 kb on - strand at 4051.484 kb on - strand at 4051.484 kb on - strand at 4051.484 kb on - strand at 4051.484 kb on - strand at 4051.484 kb on - strand at 4051.484 kb on - strand at 4051.484 kb on - strand at 4051.484 kb on - strand at 4051.484 kb on - strand at 4051.484 kb on - strand at 4051.484 kb on - strand at 4051.484 kb on - strand at 4051.555 kb on + strand at 4051.577 kb on + strand, within MPMX20_03845 at 4051.611 kb on + strand, within MPMX20_03845 at 4051.631 kb on + strand, within MPMX20_03845 at 4051.639 kb on - strand, within MPMX20_03845 at 4051.639 kb on - strand, within MPMX20_03845 at 4051.639 kb on - strand, within MPMX20_03845 at 4051.639 kb on - strand, within MPMX20_03845 at 4051.648 kb on - strand, within MPMX20_03845 at 4051.759 kb on + strand, within MPMX20_03845 at 4051.759 kb on + strand, within MPMX20_03845 at 4051.769 kb on - strand, within MPMX20_03845 at 4051.772 kb on + strand, within MPMX20_03845 at 4051.780 kb on - strand, within MPMX20_03845 at 4051.781 kb on + strand, within MPMX20_03845 at 4051.828 kb on - strand, within MPMX20_03845 at 4051.846 kb on + strand, within MPMX20_03845 at 4051.846 kb on + strand, within MPMX20_03845 at 4051.846 kb on + strand, within MPMX20_03845 at 4051.846 kb on + strand, within MPMX20_03845 at 4051.846 kb on + strand, within MPMX20_03845 at 4051.854 kb on - strand, within MPMX20_03845 at 4051.854 kb on - strand, within MPMX20_03845 at 4051.854 kb on - strand, within MPMX20_03845 at 4051.854 kb on - strand, within MPMX20_03845 at 4051.854 kb on - strand, within MPMX20_03845 at 4051.854 kb on - strand, within MPMX20_03845 at 4051.854 kb on - strand, within MPMX20_03845 at 4051.903 kb on + strand, within MPMX20_03845 at 4051.923 kb on + strand, within MPMX20_03845 at 4051.923 kb on + strand, within MPMX20_03845 at 4051.923 kb on + strand, within MPMX20_03845 at 4051.923 kb on + strand, within MPMX20_03845 at 4051.923 kb on + strand, within MPMX20_03845 at 4051.923 kb on + strand, within MPMX20_03845 at 4051.923 kb on + strand, within MPMX20_03845 at 4051.923 kb on + strand, within MPMX20_03845 at 4051.923 kb on + strand, within MPMX20_03845 at 4051.926 kb on - strand, within MPMX20_03845 at 4051.926 kb on - strand, within MPMX20_03845 at 4051.926 kb on - strand, within MPMX20_03845 at 4051.926 kb on - strand, within MPMX20_03845 at 4051.931 kb on - strand, within MPMX20_03845 at 4051.931 kb on - strand, within MPMX20_03845 at 4051.931 kb on - strand, within MPMX20_03845 at 4051.931 kb on - strand, within MPMX20_03845 at 4051.931 kb on - strand, within MPMX20_03845 at 4051.931 kb on - strand, within MPMX20_03845 at 4051.933 kb on + strand, within MPMX20_03845 at 4051.941 kb on - strand, within MPMX20_03845 at 4051.960 kb on + strand, within MPMX20_03845 at 4051.971 kb on + strand, within MPMX20_03845 at 4051.973 kb on + strand, within MPMX20_03845 at 4051.976 kb on - strand, within MPMX20_03845 at 4051.981 kb on - strand, within MPMX20_03845 at 4051.984 kb on - strand, within MPMX20_03845 at 4052.048 kb on + strand, within MPMX20_03845 at 4052.064 kb on - strand, within MPMX20_03845 at 4052.072 kb on - strand, within MPMX20_03845 at 4052.079 kb on - strand, within MPMX20_03845 at 4052.099 kb on - strand, within MPMX20_03845 at 4052.123 kb on - strand, within MPMX20_03845 at 4052.167 kb on - strand, within MPMX20_03845 at 4052.206 kb on + strand, within MPMX20_03845
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 4,048,747 - MPMX20_03842 0.59 -1.3 4,048,763 - MPMX20_03842 0.61 -0.6 4,048,845 - MPMX20_03842 0.71 -0.5 4,048,850 - MPMX20_03842 0.71 -2.6 4,048,890 + MPMX20_03842 0.76 +0.8 4,048,890 + MPMX20_03842 0.76 +0.5 4,048,898 - MPMX20_03842 0.77 -2.5 4,048,904 + MPMX20_03842 0.77 -1.9 4,048,912 - MPMX20_03842 0.78 -3.1 4,048,983 + MPMX20_03842 0.87 -0.2 4,049,081 + +0.5 4,049,325 + MPMX20_03843 0.20 -2.9 4,049,454 + MPMX20_03843 0.58 +1.6 4,049,454 + MPMX20_03843 0.58 +1.6 4,049,462 - MPMX20_03843 0.61 -1.6 4,049,462 - MPMX20_03843 0.61 -1.8 4,049,462 - MPMX20_03843 0.61 +0.3 4,049,480 - MPMX20_03843 0.66 +0.9 4,049,486 + MPMX20_03843 0.68 +2.2 4,049,486 + MPMX20_03843 0.68 +0.1 4,049,521 + MPMX20_03843 0.78 +1.8 4,049,529 - MPMX20_03843 0.81 -0.2 4,049,560 - +0.0 4,049,659 + +1.4 4,049,754 - +1.8 4,049,754 - +1.9 4,049,754 - +1.8 4,049,778 - +2.5 4,049,840 + MPMX20_03844 0.11 +1.9 4,049,840 + MPMX20_03844 0.11 +1.8 4,049,848 - MPMX20_03844 0.11 -0.3 4,049,945 + MPMX20_03844 0.18 +0.6 4,050,001 + MPMX20_03844 0.21 +2.8 4,050,088 + MPMX20_03844 0.27 -0.4 4,050,165 + MPMX20_03844 0.32 +2.6 4,050,167 + MPMX20_03844 0.32 +2.1 4,050,204 - MPMX20_03844 0.34 +4.4 4,050,255 + MPMX20_03844 0.38 +1.1 4,050,255 + MPMX20_03844 0.38 +1.0 4,050,291 + MPMX20_03844 0.40 +2.1 4,050,294 + MPMX20_03844 0.40 +2.5 4,050,302 + MPMX20_03844 0.41 +2.1 4,050,302 + MPMX20_03844 0.41 -0.1 4,050,302 + MPMX20_03844 0.41 +0.0 4,050,310 - MPMX20_03844 0.41 +0.9 4,050,336 + MPMX20_03844 0.43 +0.5 4,050,354 + MPMX20_03844 0.44 +1.3 4,050,389 - MPMX20_03844 0.46 +3.5 4,050,427 - MPMX20_03844 0.49 +1.7 4,050,429 + MPMX20_03844 0.49 +2.8 4,050,430 - MPMX20_03844 0.49 +1.5 4,050,460 + MPMX20_03844 0.51 +2.5 4,050,482 + MPMX20_03844 0.52 +0.3 4,050,528 + MPMX20_03844 0.55 +0.9 4,050,593 + MPMX20_03844 0.59 +2.6 4,050,604 + MPMX20_03844 0.60 +1.6 4,050,612 - MPMX20_03844 0.61 +3.1 4,050,621 - MPMX20_03844 0.61 +3.0 4,050,675 + MPMX20_03844 0.65 +2.1 4,050,675 + MPMX20_03844 0.65 -0.1 4,050,683 - MPMX20_03844 0.65 -0.0 4,050,683 - MPMX20_03844 0.65 +1.9 4,050,686 + MPMX20_03844 0.65 +0.4 4,050,694 - MPMX20_03844 0.66 -0.1 4,050,701 - MPMX20_03844 0.66 +0.6 4,050,720 + MPMX20_03844 0.68 +1.1 4,050,747 - MPMX20_03844 0.69 +1.2 4,050,753 + MPMX20_03844 0.70 +2.5 4,050,764 + MPMX20_03844 0.70 +2.1 4,050,766 - MPMX20_03844 0.71 +1.2 4,050,766 - MPMX20_03844 0.71 +0.9 4,050,800 - MPMX20_03844 0.73 +2.1 4,050,803 - MPMX20_03844 0.73 +1.4 4,050,807 - MPMX20_03844 0.73 +2.8 4,050,832 + MPMX20_03844 0.75 +0.2 4,050,840 - MPMX20_03844 0.75 +1.4 4,050,840 - MPMX20_03844 0.75 +1.8 4,050,854 - MPMX20_03844 0.76 +1.0 4,050,873 - MPMX20_03844 0.78 +2.2 4,050,899 + MPMX20_03844 0.79 +2.0 4,050,899 + MPMX20_03844 0.79 +1.1 4,050,899 + MPMX20_03844 0.79 -0.6 4,050,899 + MPMX20_03844 0.79 +0.8 4,050,945 + MPMX20_03844 0.82 +1.1 4,051,042 + MPMX20_03844 0.88 +1.5 4,051,042 + MPMX20_03844 0.88 +2.5 4,051,042 + MPMX20_03844 0.88 +2.8 4,051,042 + MPMX20_03844 0.88 +1.1 4,051,050 - MPMX20_03844 0.89 +1.6 4,051,050 - MPMX20_03844 0.89 +3.5 4,051,050 - MPMX20_03844 0.89 +2.5 4,051,064 - MPMX20_03844 0.90 +1.0 4,051,064 - MPMX20_03844 0.90 +0.9 4,051,064 - MPMX20_03844 0.90 +1.4 4,051,091 + +0.9 4,051,120 + +0.8 4,051,128 - +2.8 4,051,129 + +0.7 4,051,136 + +1.5 4,051,240 + -1.4 4,051,267 - +2.5 4,051,329 + -2.2 4,051,386 - -1.3 4,051,413 + +1.0 4,051,461 - -0.1 4,051,476 + -0.8 4,051,476 + +0.3 4,051,476 + +1.5 4,051,476 + +2.5 4,051,476 + -0.8 4,051,476 + -0.3 4,051,476 + -2.2 4,051,476 + +0.3 4,051,476 + -0.8 4,051,476 + -0.1 4,051,476 + +0.9 4,051,476 + -0.4 4,051,476 + +0.7 4,051,476 + -1.7 4,051,476 + -0.3 4,051,476 + -1.0 4,051,476 + -0.9 4,051,476 + -1.0 4,051,476 + -0.5 4,051,484 - -0.4 4,051,484 - -0.8 4,051,484 - +1.5 4,051,484 - +0.1 4,051,484 - +0.9 4,051,484 - -1.2 4,051,484 - +3.5 4,051,484 - +1.5 4,051,484 - +0.5 4,051,484 - +0.1 4,051,484 - +1.3 4,051,484 - +0.9 4,051,484 - +1.0 4,051,484 - -0.4 4,051,484 - -1.0 4,051,484 - -1.2 4,051,555 + +2.2 4,051,577 + MPMX20_03845 0.11 -2.4 4,051,611 + MPMX20_03845 0.14 +0.5 4,051,631 + MPMX20_03845 0.16 +0.5 4,051,639 - MPMX20_03845 0.17 -0.1 4,051,639 - MPMX20_03845 0.17 -0.3 4,051,639 - MPMX20_03845 0.17 -2.3 4,051,639 - MPMX20_03845 0.17 -1.4 4,051,648 - MPMX20_03845 0.18 +0.5 4,051,759 + MPMX20_03845 0.28 +0.2 4,051,759 + MPMX20_03845 0.28 -0.8 4,051,769 - MPMX20_03845 0.29 +0.4 4,051,772 + MPMX20_03845 0.29 -1.1 4,051,780 - MPMX20_03845 0.30 -0.7 4,051,781 + MPMX20_03845 0.30 +1.5 4,051,828 - MPMX20_03845 0.35 -0.4 4,051,846 + MPMX20_03845 0.37 -2.4 4,051,846 + MPMX20_03845 0.37 -1.2 4,051,846 + MPMX20_03845 0.37 +1.5 4,051,846 + MPMX20_03845 0.37 -1.1 4,051,846 + MPMX20_03845 0.37 -1.3 4,051,854 - MPMX20_03845 0.37 +0.1 4,051,854 - MPMX20_03845 0.37 -3.2 4,051,854 - MPMX20_03845 0.37 -0.3 4,051,854 - MPMX20_03845 0.37 -0.7 4,051,854 - MPMX20_03845 0.37 -1.5 4,051,854 - MPMX20_03845 0.37 +0.1 4,051,854 - MPMX20_03845 0.37 -0.8 4,051,903 + MPMX20_03845 0.42 +1.3 4,051,923 + MPMX20_03845 0.44 -0.9 4,051,923 + MPMX20_03845 0.44 +0.2 4,051,923 + MPMX20_03845 0.44 -1.2 4,051,923 + MPMX20_03845 0.44 -0.7 4,051,923 + MPMX20_03845 0.44 +2.1 4,051,923 + MPMX20_03845 0.44 -1.2 4,051,923 + MPMX20_03845 0.44 +1.0 4,051,923 + MPMX20_03845 0.44 -1.8 4,051,923 + MPMX20_03845 0.44 -2.3 4,051,926 - MPMX20_03845 0.44 -0.8 4,051,926 - MPMX20_03845 0.44 -1.1 4,051,926 - MPMX20_03845 0.44 +0.2 4,051,926 - MPMX20_03845 0.44 -1.1 4,051,931 - MPMX20_03845 0.45 +1.5 4,051,931 - MPMX20_03845 0.45 +0.0 4,051,931 - MPMX20_03845 0.45 -0.7 4,051,931 - MPMX20_03845 0.45 -1.8 4,051,931 - MPMX20_03845 0.45 -2.4 4,051,931 - MPMX20_03845 0.45 +0.2 4,051,933 + MPMX20_03845 0.45 +0.2 4,051,941 - MPMX20_03845 0.46 +2.5 4,051,960 + MPMX20_03845 0.48 +1.3 4,051,971 + MPMX20_03845 0.49 -0.9 4,051,973 + MPMX20_03845 0.49 -1.1 4,051,976 - MPMX20_03845 0.49 -0.1 4,051,981 - MPMX20_03845 0.50 +0.5 4,051,984 - MPMX20_03845 0.50 -0.4 4,052,048 + MPMX20_03845 0.56 -0.9 4,052,064 - MPMX20_03845 0.58 +0.0 4,052,072 - MPMX20_03845 0.58 -1.3 4,052,079 - MPMX20_03845 0.59 -2.6 4,052,099 - MPMX20_03845 0.61 -2.4 4,052,123 - MPMX20_03845 0.63 -0.4 4,052,167 - MPMX20_03845 0.67 -0.5 4,052,206 + MPMX20_03845 0.71 +0.5
Or see this region's nucleotide sequence