Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03752

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03751 and MPMX20_03752 are separated by 5 nucleotidesMPMX20_03752 and MPMX20_03753 are separated by 23 nucleotides MPMX20_03751: MPMX20_03751 - Single-stranded-DNA-specific exonuclease RecJ, at 3,953,154 to 3,954,887 _03751 MPMX20_03752: MPMX20_03752 - Thiol:disulfide interchange protein DsbC, at 3,954,893 to 3,955,606 _03752 MPMX20_03753: MPMX20_03753 - Tyrosine recombinase XerD, at 3,955,630 to 3,956,526 _03753 Position (kb) 3954 3955 3956Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3953.909 kb on + strand, within MPMX20_03751at 3953.909 kb on + strand, within MPMX20_03751at 3953.917 kb on - strand, within MPMX20_03751at 3953.917 kb on - strand, within MPMX20_03751at 3953.917 kb on - strand, within MPMX20_03751at 3953.917 kb on - strand, within MPMX20_03751at 3953.917 kb on - strand, within MPMX20_03751at 3953.947 kb on + strand, within MPMX20_03751at 3953.951 kb on - strand, within MPMX20_03751at 3953.966 kb on + strand, within MPMX20_03751at 3954.001 kb on - strand, within MPMX20_03751at 3954.044 kb on - strand, within MPMX20_03751at 3954.116 kb on - strand, within MPMX20_03751at 3954.128 kb on + strand, within MPMX20_03751at 3954.129 kb on + strand, within MPMX20_03751at 3954.137 kb on - strand, within MPMX20_03751at 3954.168 kb on + strand, within MPMX20_03751at 3954.192 kb on + strand, within MPMX20_03751at 3954.206 kb on + strand, within MPMX20_03751at 3954.214 kb on - strand, within MPMX20_03751at 3954.317 kb on - strand, within MPMX20_03751at 3954.324 kb on - strand, within MPMX20_03751at 3954.361 kb on - strand, within MPMX20_03751at 3954.361 kb on - strand, within MPMX20_03751at 3954.458 kb on + strand, within MPMX20_03751at 3954.494 kb on + strand, within MPMX20_03751at 3954.516 kb on - strand, within MPMX20_03751at 3954.527 kb on + strand, within MPMX20_03751at 3954.527 kb on + strand, within MPMX20_03751at 3954.527 kb on + strand, within MPMX20_03751at 3954.527 kb on + strand, within MPMX20_03751at 3954.535 kb on - strand, within MPMX20_03751at 3954.535 kb on - strand, within MPMX20_03751at 3954.535 kb on - strand, within MPMX20_03751at 3954.572 kb on + strand, within MPMX20_03751at 3954.605 kb on + strand, within MPMX20_03751at 3954.613 kb on - strand, within MPMX20_03751at 3954.613 kb on - strand, within MPMX20_03751at 3954.613 kb on - strand, within MPMX20_03751at 3954.613 kb on - strand, within MPMX20_03751at 3954.613 kb on - strand, within MPMX20_03751at 3954.667 kb on - strand, within MPMX20_03751at 3954.676 kb on + strand, within MPMX20_03751at 3954.676 kb on + strand, within MPMX20_03751at 3954.676 kb on + strand, within MPMX20_03751at 3954.676 kb on + strand, within MPMX20_03751at 3954.684 kb on - strand, within MPMX20_03751at 3954.684 kb on - strand, within MPMX20_03751at 3954.684 kb on - strand, within MPMX20_03751at 3954.684 kb on - strand, within MPMX20_03751at 3954.684 kb on - strand, within MPMX20_03751at 3954.684 kb on - strand, within MPMX20_03751at 3954.684 kb on - strand, within MPMX20_03751at 3954.749 kb on + strandat 3954.749 kb on + strandat 3954.757 kb on - strandat 3954.757 kb on - strandat 3954.757 kb on - strandat 3954.929 kb on - strandat 3954.951 kb on - strandat 3954.975 kb on - strand, within MPMX20_03752at 3954.980 kb on + strand, within MPMX20_03752at 3954.988 kb on - strand, within MPMX20_03752at 3955.037 kb on - strand, within MPMX20_03752at 3955.037 kb on - strand, within MPMX20_03752at 3955.134 kb on + strand, within MPMX20_03752at 3955.144 kb on + strand, within MPMX20_03752at 3955.144 kb on + strand, within MPMX20_03752at 3955.202 kb on - strand, within MPMX20_03752at 3955.202 kb on - strand, within MPMX20_03752at 3955.234 kb on + strand, within MPMX20_03752at 3955.242 kb on - strand, within MPMX20_03752at 3955.242 kb on - strand, within MPMX20_03752at 3955.242 kb on - strand, within MPMX20_03752at 3955.326 kb on + strand, within MPMX20_03752at 3955.369 kb on + strand, within MPMX20_03752at 3955.377 kb on - strand, within MPMX20_03752at 3955.377 kb on - strand, within MPMX20_03752at 3955.377 kb on - strand, within MPMX20_03752at 3955.377 kb on - strand, within MPMX20_03752at 3955.377 kb on - strand, within MPMX20_03752at 3955.433 kb on - strand, within MPMX20_03752at 3955.435 kb on + strand, within MPMX20_03752at 3955.490 kb on - strand, within MPMX20_03752at 3955.492 kb on - strand, within MPMX20_03752at 3955.494 kb on - strand, within MPMX20_03752at 3955.503 kb on + strand, within MPMX20_03752at 3955.523 kb on + strand, within MPMX20_03752at 3955.533 kb on - strand, within MPMX20_03752at 3955.580 kb on + strandat 3955.645 kb on - strandat 3955.645 kb on - strandat 3955.737 kb on - strand, within MPMX20_03753at 3955.830 kb on + strand, within MPMX20_03753at 3955.919 kb on + strand, within MPMX20_03753at 3955.942 kb on + strand, within MPMX20_03753at 3955.982 kb on - strand, within MPMX20_03753at 3955.984 kb on - strand, within MPMX20_03753at 3955.989 kb on + strand, within MPMX20_03753at 3956.034 kb on - strand, within MPMX20_03753at 3956.043 kb on + strand, within MPMX20_03753at 3956.043 kb on + strand, within MPMX20_03753at 3956.043 kb on + strand, within MPMX20_03753at 3956.051 kb on - strand, within MPMX20_03753at 3956.081 kb on - strand, within MPMX20_03753at 3956.096 kb on + strand, within MPMX20_03753at 3956.118 kb on - strand, within MPMX20_03753at 3956.185 kb on + strand, within MPMX20_03753at 3956.224 kb on + strand, within MPMX20_03753at 3956.224 kb on + strand, within MPMX20_03753at 3956.224 kb on + strand, within MPMX20_03753at 3956.224 kb on + strand, within MPMX20_03753at 3956.224 kb on + strand, within MPMX20_03753at 3956.232 kb on - strand, within MPMX20_03753at 3956.232 kb on - strand, within MPMX20_03753at 3956.264 kb on + strand, within MPMX20_03753at 3956.297 kb on - strand, within MPMX20_03753at 3956.307 kb on - strand, within MPMX20_03753at 3956.329 kb on + strand, within MPMX20_03753at 3956.333 kb on + strand, within MPMX20_03753at 3956.355 kb on - strand, within MPMX20_03753at 3956.424 kb on + strand, within MPMX20_03753at 3956.439 kb on + strandat 3956.444 kb on + strandat 3956.486 kb on - strandat 3956.518 kb on + strandat 3956.578 kb on + strandat 3956.580 kb on + strandat 3956.588 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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3,953,909 + MPMX20_03751 0.44 -0.4
3,953,909 + MPMX20_03751 0.44 -0.5
3,953,917 - MPMX20_03751 0.44 +1.6
3,953,917 - MPMX20_03751 0.44 -0.0
3,953,917 - MPMX20_03751 0.44 -0.7
3,953,917 - MPMX20_03751 0.44 -2.0
3,953,917 - MPMX20_03751 0.44 -1.8
3,953,947 + MPMX20_03751 0.46 -2.0
3,953,951 - MPMX20_03751 0.46 -0.4
3,953,966 + MPMX20_03751 0.47 +2.6
3,954,001 - MPMX20_03751 0.49 +0.2
3,954,044 - MPMX20_03751 0.51 -2.3
3,954,116 - MPMX20_03751 0.55 -2.2
3,954,128 + MPMX20_03751 0.56 +0.3
3,954,129 + MPMX20_03751 0.56 +1.6
3,954,137 - MPMX20_03751 0.57 -0.0
3,954,168 + MPMX20_03751 0.58 -1.4
3,954,192 + MPMX20_03751 0.60 -3.1
3,954,206 + MPMX20_03751 0.61 -0.2
3,954,214 - MPMX20_03751 0.61 -0.4
3,954,317 - MPMX20_03751 0.67 +0.2
3,954,324 - MPMX20_03751 0.67 -0.2
3,954,361 - MPMX20_03751 0.70 -1.5
3,954,361 - MPMX20_03751 0.70 -1.0
3,954,458 + MPMX20_03751 0.75 +2.6
3,954,494 + MPMX20_03751 0.77 -0.8
3,954,516 - MPMX20_03751 0.79 -1.4
3,954,527 + MPMX20_03751 0.79 +1.6
3,954,527 + MPMX20_03751 0.79 +0.3
3,954,527 + MPMX20_03751 0.79 +0.2
3,954,527 + MPMX20_03751 0.79 -2.0
3,954,535 - MPMX20_03751 0.80 -0.7
3,954,535 - MPMX20_03751 0.80 -0.2
3,954,535 - MPMX20_03751 0.80 +0.7
3,954,572 + MPMX20_03751 0.82 -3.0
3,954,605 + MPMX20_03751 0.84 -1.4
3,954,613 - MPMX20_03751 0.84 +0.6
3,954,613 - MPMX20_03751 0.84 -3.7
3,954,613 - MPMX20_03751 0.84 -2.3
3,954,613 - MPMX20_03751 0.84 +0.6
3,954,613 - MPMX20_03751 0.84 -0.1
3,954,667 - MPMX20_03751 0.87 -1.2
3,954,676 + MPMX20_03751 0.88 -2.3
3,954,676 + MPMX20_03751 0.88 +0.2
3,954,676 + MPMX20_03751 0.88 +0.2
3,954,676 + MPMX20_03751 0.88 -0.4
3,954,684 - MPMX20_03751 0.88 -0.4
3,954,684 - MPMX20_03751 0.88 +1.0
3,954,684 - MPMX20_03751 0.88 +1.3
3,954,684 - MPMX20_03751 0.88 -3.0
3,954,684 - MPMX20_03751 0.88 -1.2
3,954,684 - MPMX20_03751 0.88 -1.1
3,954,684 - MPMX20_03751 0.88 -2.5
3,954,749 + -2.2
3,954,749 + -0.6
3,954,757 - +0.6
3,954,757 - -3.0
3,954,757 - -0.6
3,954,929 - +1.3
3,954,951 - +0.9
3,954,975 - MPMX20_03752 0.11 +0.2
3,954,980 + MPMX20_03752 0.12 +1.0
3,954,988 - MPMX20_03752 0.13 +3.2
3,955,037 - MPMX20_03752 0.20 +2.8
3,955,037 - MPMX20_03752 0.20 +1.4
3,955,134 + MPMX20_03752 0.34 +0.6
3,955,144 + MPMX20_03752 0.35 +1.6
3,955,144 + MPMX20_03752 0.35 -0.2
3,955,202 - MPMX20_03752 0.43 +3.2
3,955,202 - MPMX20_03752 0.43 +0.2
3,955,234 + MPMX20_03752 0.48 -1.1
3,955,242 - MPMX20_03752 0.49 +3.6
3,955,242 - MPMX20_03752 0.49 +1.7
3,955,242 - MPMX20_03752 0.49 +1.4
3,955,326 + MPMX20_03752 0.61 +1.1
3,955,369 + MPMX20_03752 0.67 +0.3
3,955,377 - MPMX20_03752 0.68 +0.1
3,955,377 - MPMX20_03752 0.68 +2.6
3,955,377 - MPMX20_03752 0.68 +0.7
3,955,377 - MPMX20_03752 0.68 -2.0
3,955,377 - MPMX20_03752 0.68 +3.4
3,955,433 - MPMX20_03752 0.76 +0.9
3,955,435 + MPMX20_03752 0.76 -0.1
3,955,490 - MPMX20_03752 0.84 +1.0
3,955,492 - MPMX20_03752 0.84 -1.1
3,955,494 - MPMX20_03752 0.84 +0.8
3,955,503 + MPMX20_03752 0.85 -1.0
3,955,523 + MPMX20_03752 0.88 -1.8
3,955,533 - MPMX20_03752 0.90 +5.0
3,955,580 + +2.9
3,955,645 - -0.9
3,955,645 - -1.3
3,955,737 - MPMX20_03753 0.12 +2.0
3,955,830 + MPMX20_03753 0.22 -0.4
3,955,919 + MPMX20_03753 0.32 -0.4
3,955,942 + MPMX20_03753 0.35 -1.6
3,955,982 - MPMX20_03753 0.39 -0.9
3,955,984 - MPMX20_03753 0.39 -1.1
3,955,989 + MPMX20_03753 0.40 +1.2
3,956,034 - MPMX20_03753 0.45 +1.0
3,956,043 + MPMX20_03753 0.46 -0.8
3,956,043 + MPMX20_03753 0.46 +1.6
3,956,043 + MPMX20_03753 0.46 -0.2
3,956,051 - MPMX20_03753 0.47 +1.0
3,956,081 - MPMX20_03753 0.50 -0.6
3,956,096 + MPMX20_03753 0.52 -2.7
3,956,118 - MPMX20_03753 0.54 -3.0
3,956,185 + MPMX20_03753 0.62 -0.4
3,956,224 + MPMX20_03753 0.66 -1.0
3,956,224 + MPMX20_03753 0.66 -2.9
3,956,224 + MPMX20_03753 0.66 -1.2
3,956,224 + MPMX20_03753 0.66 -0.2
3,956,224 + MPMX20_03753 0.66 -0.0
3,956,232 - MPMX20_03753 0.67 -1.2
3,956,232 - MPMX20_03753 0.67 -1.6
3,956,264 + MPMX20_03753 0.71 +1.0
3,956,297 - MPMX20_03753 0.74 -1.2
3,956,307 - MPMX20_03753 0.75 +0.6
3,956,329 + MPMX20_03753 0.78 -1.9
3,956,333 + MPMX20_03753 0.78 +1.0
3,956,355 - MPMX20_03753 0.81 -0.6
3,956,424 + MPMX20_03753 0.89 -2.1
3,956,439 + -0.0
3,956,444 + -0.9
3,956,486 - +2.6
3,956,518 + +0.6
3,956,578 + -0.0
3,956,580 + +1.6
3,956,588 - -0.7

Or see this region's nucleotide sequence