Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03751

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03750 and MPMX20_03751 are separated by 307 nucleotidesMPMX20_03751 and MPMX20_03752 are separated by 5 nucleotidesMPMX20_03752 and MPMX20_03753 are separated by 23 nucleotides MPMX20_03750: MPMX20_03750 - Peptide chain release factor RF2, at 3,951,965 to 3,952,846 _03750 MPMX20_03751: MPMX20_03751 - Single-stranded-DNA-specific exonuclease RecJ, at 3,953,154 to 3,954,887 _03751 MPMX20_03752: MPMX20_03752 - Thiol:disulfide interchange protein DsbC, at 3,954,893 to 3,955,606 _03752 MPMX20_03753: MPMX20_03753 - Tyrosine recombinase XerD, at 3,955,630 to 3,956,526 _03753 Position (kb) 3953 3954 3955Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3953.118 kb on - strandat 3953.183 kb on + strandat 3953.183 kb on + strandat 3953.183 kb on + strandat 3953.189 kb on - strandat 3953.191 kb on - strandat 3953.197 kb on - strandat 3953.234 kb on + strandat 3953.242 kb on - strandat 3953.293 kb on - strandat 3953.321 kb on - strandat 3953.321 kb on - strandat 3953.396 kb on - strand, within MPMX20_03751at 3953.414 kb on - strand, within MPMX20_03751at 3953.414 kb on - strand, within MPMX20_03751at 3953.548 kb on + strand, within MPMX20_03751at 3953.638 kb on - strand, within MPMX20_03751at 3953.649 kb on + strand, within MPMX20_03751at 3953.657 kb on - strand, within MPMX20_03751at 3953.673 kb on + strand, within MPMX20_03751at 3953.688 kb on + strand, within MPMX20_03751at 3953.696 kb on - strand, within MPMX20_03751at 3953.800 kb on + strand, within MPMX20_03751at 3953.808 kb on - strand, within MPMX20_03751at 3953.808 kb on - strand, within MPMX20_03751at 3953.808 kb on - strand, within MPMX20_03751at 3953.861 kb on + strand, within MPMX20_03751at 3953.861 kb on + strand, within MPMX20_03751at 3953.909 kb on + strand, within MPMX20_03751at 3953.909 kb on + strand, within MPMX20_03751at 3953.917 kb on - strand, within MPMX20_03751at 3953.917 kb on - strand, within MPMX20_03751at 3953.917 kb on - strand, within MPMX20_03751at 3953.917 kb on - strand, within MPMX20_03751at 3953.917 kb on - strand, within MPMX20_03751at 3953.947 kb on + strand, within MPMX20_03751at 3953.951 kb on - strand, within MPMX20_03751at 3953.966 kb on + strand, within MPMX20_03751at 3954.001 kb on - strand, within MPMX20_03751at 3954.044 kb on - strand, within MPMX20_03751at 3954.116 kb on - strand, within MPMX20_03751at 3954.128 kb on + strand, within MPMX20_03751at 3954.129 kb on + strand, within MPMX20_03751at 3954.137 kb on - strand, within MPMX20_03751at 3954.168 kb on + strand, within MPMX20_03751at 3954.192 kb on + strand, within MPMX20_03751at 3954.206 kb on + strand, within MPMX20_03751at 3954.214 kb on - strand, within MPMX20_03751at 3954.317 kb on - strand, within MPMX20_03751at 3954.324 kb on - strand, within MPMX20_03751at 3954.361 kb on - strand, within MPMX20_03751at 3954.361 kb on - strand, within MPMX20_03751at 3954.494 kb on + strand, within MPMX20_03751at 3954.516 kb on - strand, within MPMX20_03751at 3954.527 kb on + strand, within MPMX20_03751at 3954.527 kb on + strand, within MPMX20_03751at 3954.527 kb on + strand, within MPMX20_03751at 3954.527 kb on + strand, within MPMX20_03751at 3954.535 kb on - strand, within MPMX20_03751at 3954.535 kb on - strand, within MPMX20_03751at 3954.535 kb on - strand, within MPMX20_03751at 3954.572 kb on + strand, within MPMX20_03751at 3954.605 kb on + strand, within MPMX20_03751at 3954.613 kb on - strand, within MPMX20_03751at 3954.613 kb on - strand, within MPMX20_03751at 3954.613 kb on - strand, within MPMX20_03751at 3954.613 kb on - strand, within MPMX20_03751at 3954.613 kb on - strand, within MPMX20_03751at 3954.667 kb on - strand, within MPMX20_03751at 3954.676 kb on + strand, within MPMX20_03751at 3954.676 kb on + strand, within MPMX20_03751at 3954.676 kb on + strand, within MPMX20_03751at 3954.676 kb on + strand, within MPMX20_03751at 3954.676 kb on + strand, within MPMX20_03751at 3954.684 kb on - strand, within MPMX20_03751at 3954.684 kb on - strand, within MPMX20_03751at 3954.684 kb on - strand, within MPMX20_03751at 3954.684 kb on - strand, within MPMX20_03751at 3954.684 kb on - strand, within MPMX20_03751at 3954.684 kb on - strand, within MPMX20_03751at 3954.684 kb on - strand, within MPMX20_03751at 3954.749 kb on + strandat 3954.749 kb on + strandat 3954.757 kb on - strandat 3954.757 kb on - strandat 3954.757 kb on - strandat 3954.929 kb on - strandat 3954.951 kb on - strandat 3954.975 kb on - strand, within MPMX20_03752at 3954.980 kb on + strand, within MPMX20_03752at 3954.988 kb on - strand, within MPMX20_03752at 3955.037 kb on - strand, within MPMX20_03752at 3955.037 kb on - strand, within MPMX20_03752at 3955.144 kb on + strand, within MPMX20_03752at 3955.144 kb on + strand, within MPMX20_03752at 3955.202 kb on - strand, within MPMX20_03752at 3955.202 kb on - strand, within MPMX20_03752at 3955.234 kb on + strand, within MPMX20_03752at 3955.242 kb on - strand, within MPMX20_03752at 3955.242 kb on - strand, within MPMX20_03752at 3955.242 kb on - strand, within MPMX20_03752at 3955.326 kb on + strand, within MPMX20_03752at 3955.369 kb on + strand, within MPMX20_03752at 3955.377 kb on - strand, within MPMX20_03752at 3955.377 kb on - strand, within MPMX20_03752at 3955.377 kb on - strand, within MPMX20_03752at 3955.377 kb on - strand, within MPMX20_03752at 3955.377 kb on - strand, within MPMX20_03752at 3955.433 kb on - strand, within MPMX20_03752at 3955.435 kb on + strand, within MPMX20_03752at 3955.490 kb on - strand, within MPMX20_03752at 3955.492 kb on - strand, within MPMX20_03752at 3955.494 kb on - strand, within MPMX20_03752at 3955.503 kb on + strand, within MPMX20_03752at 3955.523 kb on + strand, within MPMX20_03752at 3955.533 kb on - strand, within MPMX20_03752at 3955.580 kb on + strandat 3955.645 kb on - strandat 3955.645 kb on - strandat 3955.737 kb on - strand, within MPMX20_03753at 3955.830 kb on + strand, within MPMX20_03753

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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3,953,118 - +0.6
3,953,183 + +0.3
3,953,183 + +0.6
3,953,183 + -0.0
3,953,189 - +0.8
3,953,191 - +0.4
3,953,197 - -1.1
3,953,234 + +1.6
3,953,242 - -0.8
3,953,293 - -1.9
3,953,321 - -0.7
3,953,321 - +0.1
3,953,396 - MPMX20_03751 0.14 +1.3
3,953,414 - MPMX20_03751 0.15 -0.8
3,953,414 - MPMX20_03751 0.15 -0.8
3,953,548 + MPMX20_03751 0.23 -0.4
3,953,638 - MPMX20_03751 0.28 -0.0
3,953,649 + MPMX20_03751 0.29 +0.4
3,953,657 - MPMX20_03751 0.29 -0.7
3,953,673 + MPMX20_03751 0.30 -0.8
3,953,688 + MPMX20_03751 0.31 -0.1
3,953,696 - MPMX20_03751 0.31 -0.4
3,953,800 + MPMX20_03751 0.37 -0.5
3,953,808 - MPMX20_03751 0.38 +2.6
3,953,808 - MPMX20_03751 0.38 -2.1
3,953,808 - MPMX20_03751 0.38 -0.0
3,953,861 + MPMX20_03751 0.41 +1.0
3,953,861 + MPMX20_03751 0.41 -0.2
3,953,909 + MPMX20_03751 0.44 -0.4
3,953,909 + MPMX20_03751 0.44 -0.5
3,953,917 - MPMX20_03751 0.44 +1.6
3,953,917 - MPMX20_03751 0.44 -0.0
3,953,917 - MPMX20_03751 0.44 -0.7
3,953,917 - MPMX20_03751 0.44 -2.0
3,953,917 - MPMX20_03751 0.44 -1.8
3,953,947 + MPMX20_03751 0.46 -2.0
3,953,951 - MPMX20_03751 0.46 -0.4
3,953,966 + MPMX20_03751 0.47 +2.6
3,954,001 - MPMX20_03751 0.49 +0.2
3,954,044 - MPMX20_03751 0.51 -2.3
3,954,116 - MPMX20_03751 0.55 -2.2
3,954,128 + MPMX20_03751 0.56 +0.3
3,954,129 + MPMX20_03751 0.56 +1.6
3,954,137 - MPMX20_03751 0.57 -0.0
3,954,168 + MPMX20_03751 0.58 -1.4
3,954,192 + MPMX20_03751 0.60 -3.1
3,954,206 + MPMX20_03751 0.61 -0.2
3,954,214 - MPMX20_03751 0.61 -0.4
3,954,317 - MPMX20_03751 0.67 +0.2
3,954,324 - MPMX20_03751 0.67 -0.2
3,954,361 - MPMX20_03751 0.70 -1.5
3,954,361 - MPMX20_03751 0.70 -1.0
3,954,494 + MPMX20_03751 0.77 -0.8
3,954,516 - MPMX20_03751 0.79 -1.4
3,954,527 + MPMX20_03751 0.79 +1.6
3,954,527 + MPMX20_03751 0.79 +0.3
3,954,527 + MPMX20_03751 0.79 +0.2
3,954,527 + MPMX20_03751 0.79 -2.0
3,954,535 - MPMX20_03751 0.80 -0.7
3,954,535 - MPMX20_03751 0.80 -0.2
3,954,535 - MPMX20_03751 0.80 +0.7
3,954,572 + MPMX20_03751 0.82 -3.0
3,954,605 + MPMX20_03751 0.84 -1.4
3,954,613 - MPMX20_03751 0.84 +0.6
3,954,613 - MPMX20_03751 0.84 -3.7
3,954,613 - MPMX20_03751 0.84 -2.3
3,954,613 - MPMX20_03751 0.84 +0.6
3,954,613 - MPMX20_03751 0.84 -0.1
3,954,667 - MPMX20_03751 0.87 -1.2
3,954,676 + MPMX20_03751 0.88 -2.3
3,954,676 + MPMX20_03751 0.88 +1.0
3,954,676 + MPMX20_03751 0.88 +0.2
3,954,676 + MPMX20_03751 0.88 +0.2
3,954,676 + MPMX20_03751 0.88 -0.4
3,954,684 - MPMX20_03751 0.88 -0.4
3,954,684 - MPMX20_03751 0.88 +1.0
3,954,684 - MPMX20_03751 0.88 +1.3
3,954,684 - MPMX20_03751 0.88 -3.0
3,954,684 - MPMX20_03751 0.88 -1.2
3,954,684 - MPMX20_03751 0.88 -1.1
3,954,684 - MPMX20_03751 0.88 -2.5
3,954,749 + -2.2
3,954,749 + -0.6
3,954,757 - +0.6
3,954,757 - -3.0
3,954,757 - -0.6
3,954,929 - +1.3
3,954,951 - +0.9
3,954,975 - MPMX20_03752 0.11 +0.2
3,954,980 + MPMX20_03752 0.12 +1.0
3,954,988 - MPMX20_03752 0.13 +3.2
3,955,037 - MPMX20_03752 0.20 +2.8
3,955,037 - MPMX20_03752 0.20 +1.4
3,955,144 + MPMX20_03752 0.35 +1.6
3,955,144 + MPMX20_03752 0.35 -0.2
3,955,202 - MPMX20_03752 0.43 +3.2
3,955,202 - MPMX20_03752 0.43 +0.2
3,955,234 + MPMX20_03752 0.48 -1.1
3,955,242 - MPMX20_03752 0.49 +3.6
3,955,242 - MPMX20_03752 0.49 +1.7
3,955,242 - MPMX20_03752 0.49 +1.4
3,955,326 + MPMX20_03752 0.61 +1.1
3,955,369 + MPMX20_03752 0.67 +0.3
3,955,377 - MPMX20_03752 0.68 +0.1
3,955,377 - MPMX20_03752 0.68 +2.6
3,955,377 - MPMX20_03752 0.68 +0.7
3,955,377 - MPMX20_03752 0.68 -2.0
3,955,377 - MPMX20_03752 0.68 +3.4
3,955,433 - MPMX20_03752 0.76 +0.9
3,955,435 + MPMX20_03752 0.76 -0.1
3,955,490 - MPMX20_03752 0.84 +1.0
3,955,492 - MPMX20_03752 0.84 -1.1
3,955,494 - MPMX20_03752 0.84 +0.8
3,955,503 + MPMX20_03752 0.85 -1.0
3,955,523 + MPMX20_03752 0.88 -1.8
3,955,533 - MPMX20_03752 0.90 +5.0
3,955,580 + +2.9
3,955,645 - -0.9
3,955,645 - -1.3
3,955,737 - MPMX20_03753 0.12 +2.0
3,955,830 + MPMX20_03753 0.22 -0.4

Or see this region's nucleotide sequence