Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03706

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03705 and MPMX20_03706 are separated by 122 nucleotidesMPMX20_03706 and MPMX20_03707 overlap by 6 nucleotidesMPMX20_03707 and MPMX20_03708 are separated by 100 nucleotides MPMX20_03705: MPMX20_03705 - Diaminopimelate decarboxylase, at 3,906,500 to 3,907,762 _03705 MPMX20_03706: MPMX20_03706 - Octopine catabolism/uptake operon regulatory protein OccR, at 3,907,885 to 3,908,808 _03706 MPMX20_03707: MPMX20_03707 - L-aspartate/glutamate-specific racemase, at 3,908,803 to 3,909,495 _03707 MPMX20_03708: MPMX20_03708 - hypothetical protein, at 3,909,596 to 3,909,955 _03708 Position (kb) 3907 3908 3909Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3907.022 kb on - strand, within MPMX20_03705at 3907.146 kb on + strand, within MPMX20_03705at 3907.154 kb on - strand, within MPMX20_03705at 3907.154 kb on - strand, within MPMX20_03705at 3907.159 kb on - strand, within MPMX20_03705at 3907.163 kb on - strand, within MPMX20_03705at 3907.224 kb on - strand, within MPMX20_03705at 3907.226 kb on - strand, within MPMX20_03705at 3907.235 kb on + strand, within MPMX20_03705at 3907.243 kb on - strand, within MPMX20_03705at 3907.243 kb on - strand, within MPMX20_03705at 3907.243 kb on - strand, within MPMX20_03705at 3907.342 kb on + strand, within MPMX20_03705at 3907.378 kb on + strand, within MPMX20_03705at 3907.437 kb on + strand, within MPMX20_03705at 3907.503 kb on - strand, within MPMX20_03705at 3907.528 kb on + strand, within MPMX20_03705at 3907.528 kb on + strand, within MPMX20_03705at 3907.528 kb on + strand, within MPMX20_03705at 3907.536 kb on - strand, within MPMX20_03705at 3907.559 kb on - strand, within MPMX20_03705at 3907.668 kb on + strandat 3907.676 kb on - strandat 3907.676 kb on - strandat 3907.676 kb on - strandat 3907.676 kb on - strandat 3907.686 kb on - strandat 3907.748 kb on - strandat 3907.752 kb on - strandat 3907.752 kb on - strandat 3907.758 kb on + strandat 3907.766 kb on - strandat 3907.772 kb on - strandat 3907.866 kb on - strandat 3907.947 kb on + strandat 3907.955 kb on - strandat 3907.973 kb on - strandat 3908.024 kb on + strand, within MPMX20_03706at 3908.032 kb on - strand, within MPMX20_03706at 3908.032 kb on - strand, within MPMX20_03706at 3908.034 kb on + strand, within MPMX20_03706at 3908.055 kb on + strand, within MPMX20_03706at 3908.121 kb on - strand, within MPMX20_03706at 3908.153 kb on + strand, within MPMX20_03706at 3908.169 kb on + strand, within MPMX20_03706at 3908.192 kb on + strand, within MPMX20_03706at 3908.258 kb on - strand, within MPMX20_03706at 3908.284 kb on - strand, within MPMX20_03706at 3908.308 kb on - strand, within MPMX20_03706at 3908.318 kb on + strand, within MPMX20_03706at 3908.363 kb on + strand, within MPMX20_03706at 3908.363 kb on + strand, within MPMX20_03706at 3908.446 kb on + strand, within MPMX20_03706at 3908.543 kb on - strand, within MPMX20_03706at 3908.626 kb on + strand, within MPMX20_03706at 3908.631 kb on + strand, within MPMX20_03706at 3908.631 kb on + strand, within MPMX20_03706at 3908.631 kb on + strand, within MPMX20_03706at 3908.639 kb on - strand, within MPMX20_03706at 3908.672 kb on + strand, within MPMX20_03706at 3908.695 kb on - strand, within MPMX20_03706at 3908.730 kb on + strandat 3908.748 kb on + strandat 3908.751 kb on + strandat 3908.751 kb on + strandat 3908.801 kb on + strandat 3908.801 kb on + strandat 3908.809 kb on - strandat 3908.809 kb on - strandat 3908.820 kb on - strandat 3908.862 kb on + strandat 3908.916 kb on - strand, within MPMX20_03707at 3908.961 kb on + strand, within MPMX20_03707at 3909.044 kb on - strand, within MPMX20_03707at 3909.044 kb on - strand, within MPMX20_03707at 3909.087 kb on - strand, within MPMX20_03707at 3909.087 kb on - strand, within MPMX20_03707at 3909.113 kb on + strand, within MPMX20_03707at 3909.120 kb on - strand, within MPMX20_03707at 3909.242 kb on + strand, within MPMX20_03707at 3909.288 kb on - strand, within MPMX20_03707at 3909.304 kb on - strand, within MPMX20_03707at 3909.317 kb on + strand, within MPMX20_03707at 3909.325 kb on - strand, within MPMX20_03707at 3909.363 kb on + strand, within MPMX20_03707at 3909.363 kb on + strand, within MPMX20_03707at 3909.371 kb on - strand, within MPMX20_03707at 3909.373 kb on + strand, within MPMX20_03707at 3909.373 kb on + strand, within MPMX20_03707at 3909.378 kb on + strand, within MPMX20_03707at 3909.381 kb on - strand, within MPMX20_03707at 3909.385 kb on - strand, within MPMX20_03707at 3909.403 kb on + strand, within MPMX20_03707at 3909.414 kb on + strand, within MPMX20_03707at 3909.414 kb on + strand, within MPMX20_03707at 3909.414 kb on + strand, within MPMX20_03707at 3909.414 kb on + strand, within MPMX20_03707at 3909.422 kb on - strand, within MPMX20_03707at 3909.422 kb on - strand, within MPMX20_03707at 3909.470 kb on + strandat 3909.470 kb on + strandat 3909.503 kb on + strandat 3909.503 kb on + strandat 3909.651 kb on + strand, within MPMX20_03708at 3909.687 kb on + strand, within MPMX20_03708at 3909.695 kb on - strand, within MPMX20_03708at 3909.732 kb on + strand, within MPMX20_03708at 3909.732 kb on + strand, within MPMX20_03708at 3909.740 kb on - strand, within MPMX20_03708at 3909.740 kb on - strand, within MPMX20_03708at 3909.740 kb on - strand, within MPMX20_03708at 3909.750 kb on - strand, within MPMX20_03708at 3909.750 kb on - strand, within MPMX20_03708at 3909.750 kb on - strand, within MPMX20_03708at 3909.758 kb on + strand, within MPMX20_03708at 3909.760 kb on - strand, within MPMX20_03708at 3909.766 kb on - strand, within MPMX20_03708at 3909.771 kb on + strand, within MPMX20_03708at 3909.779 kb on + strand, within MPMX20_03708at 3909.779 kb on + strand, within MPMX20_03708at 3909.779 kb on + strand, within MPMX20_03708at 3909.779 kb on + strand, within MPMX20_03708at 3909.779 kb on + strand, within MPMX20_03708at 3909.779 kb on + strand, within MPMX20_03708at 3909.779 kb on + strand, within MPMX20_03708at 3909.779 kb on + strand, within MPMX20_03708at 3909.779 kb on - strand, within MPMX20_03708at 3909.779 kb on - strand, within MPMX20_03708at 3909.786 kb on + strand, within MPMX20_03708at 3909.786 kb on + strand, within MPMX20_03708at 3909.787 kb on - strand, within MPMX20_03708at 3909.787 kb on - strand, within MPMX20_03708at 3909.787 kb on - strand, within MPMX20_03708at 3909.794 kb on - strand, within MPMX20_03708at 3909.794 kb on - strand, within MPMX20_03708at 3909.794 kb on - strand, within MPMX20_03708at 3909.794 kb on - strand, within MPMX20_03708at 3909.794 kb on - strand, within MPMX20_03708at 3909.794 kb on - strand, within MPMX20_03708at 3909.794 kb on - strand, within MPMX20_03708at 3909.794 kb on - strand, within MPMX20_03708at 3909.794 kb on - strand, within MPMX20_03708

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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3,907,022 - MPMX20_03705 0.41 -0.0
3,907,146 + MPMX20_03705 0.51 +2.6
3,907,154 - MPMX20_03705 0.52 -2.8
3,907,154 - MPMX20_03705 0.52 -1.4
3,907,159 - MPMX20_03705 0.52 -1.5
3,907,163 - MPMX20_03705 0.52 -4.4
3,907,224 - MPMX20_03705 0.57 -0.0
3,907,226 - MPMX20_03705 0.57 -1.9
3,907,235 + MPMX20_03705 0.58 -2.5
3,907,243 - MPMX20_03705 0.59 -2.1
3,907,243 - MPMX20_03705 0.59 -1.8
3,907,243 - MPMX20_03705 0.59 -0.8
3,907,342 + MPMX20_03705 0.67 -1.5
3,907,378 + MPMX20_03705 0.70 -0.9
3,907,437 + MPMX20_03705 0.74 -1.8
3,907,503 - MPMX20_03705 0.79 -0.5
3,907,528 + MPMX20_03705 0.81 -0.4
3,907,528 + MPMX20_03705 0.81 -0.0
3,907,528 + MPMX20_03705 0.81 -0.4
3,907,536 - MPMX20_03705 0.82 -1.8
3,907,559 - MPMX20_03705 0.84 -2.1
3,907,668 + -3.1
3,907,676 - -0.9
3,907,676 - -1.1
3,907,676 - +0.6
3,907,676 - -3.0
3,907,686 - -3.0
3,907,748 - -1.3
3,907,752 - -3.7
3,907,752 - -0.3
3,907,758 + -2.0
3,907,766 - -1.1
3,907,772 - -1.9
3,907,866 - -0.7
3,907,947 + +0.2
3,907,955 - -0.3
3,907,973 - -0.2
3,908,024 + MPMX20_03706 0.15 -0.4
3,908,032 - MPMX20_03706 0.16 +1.0
3,908,032 - MPMX20_03706 0.16 +0.7
3,908,034 + MPMX20_03706 0.16 -1.1
3,908,055 + MPMX20_03706 0.18 -1.4
3,908,121 - MPMX20_03706 0.26 -1.4
3,908,153 + MPMX20_03706 0.29 -0.0
3,908,169 + MPMX20_03706 0.31 -2.4
3,908,192 + MPMX20_03706 0.33 -1.7
3,908,258 - MPMX20_03706 0.40 -1.5
3,908,284 - MPMX20_03706 0.43 -1.7
3,908,308 - MPMX20_03706 0.46 -0.5
3,908,318 + MPMX20_03706 0.47 -1.3
3,908,363 + MPMX20_03706 0.52 -2.0
3,908,363 + MPMX20_03706 0.52 +2.6
3,908,446 + MPMX20_03706 0.61 -0.6
3,908,543 - MPMX20_03706 0.71 -2.0
3,908,626 + MPMX20_03706 0.80 -1.0
3,908,631 + MPMX20_03706 0.81 -2.7
3,908,631 + MPMX20_03706 0.81 -2.6
3,908,631 + MPMX20_03706 0.81 -3.1
3,908,639 - MPMX20_03706 0.82 -2.6
3,908,672 + MPMX20_03706 0.85 -0.3
3,908,695 - MPMX20_03706 0.88 -1.2
3,908,730 + -1.7
3,908,748 + -2.1
3,908,751 + -1.0
3,908,751 + +0.2
3,908,801 + -0.4
3,908,801 + -0.8
3,908,809 - +0.0
3,908,809 - -0.6
3,908,820 - +1.4
3,908,862 + +1.0
3,908,916 - MPMX20_03707 0.16 -0.9
3,908,961 + MPMX20_03707 0.23 -0.6
3,909,044 - MPMX20_03707 0.35 -1.3
3,909,044 - MPMX20_03707 0.35 +0.4
3,909,087 - MPMX20_03707 0.41 +3.0
3,909,087 - MPMX20_03707 0.41 +1.6
3,909,113 + MPMX20_03707 0.45 +3.0
3,909,120 - MPMX20_03707 0.46 +0.2
3,909,242 + MPMX20_03707 0.63 +0.2
3,909,288 - MPMX20_03707 0.70 +0.6
3,909,304 - MPMX20_03707 0.72 +1.0
3,909,317 + MPMX20_03707 0.74 +3.2
3,909,325 - MPMX20_03707 0.75 +1.4
3,909,363 + MPMX20_03707 0.81 +0.2
3,909,363 + MPMX20_03707 0.81 -0.3
3,909,371 - MPMX20_03707 0.82 -0.2
3,909,373 + MPMX20_03707 0.82 -1.0
3,909,373 + MPMX20_03707 0.82 +1.7
3,909,378 + MPMX20_03707 0.83 -1.5
3,909,381 - MPMX20_03707 0.83 +1.0
3,909,385 - MPMX20_03707 0.84 -0.1
3,909,403 + MPMX20_03707 0.87 +0.1
3,909,414 + MPMX20_03707 0.88 -0.3
3,909,414 + MPMX20_03707 0.88 -0.0
3,909,414 + MPMX20_03707 0.88 +1.3
3,909,414 + MPMX20_03707 0.88 +1.8
3,909,422 - MPMX20_03707 0.89 -0.1
3,909,422 - MPMX20_03707 0.89 +2.0
3,909,470 + +3.1
3,909,470 + -0.0
3,909,503 + -1.8
3,909,503 + +0.1
3,909,651 + MPMX20_03708 0.15 -0.6
3,909,687 + MPMX20_03708 0.25 -0.4
3,909,695 - MPMX20_03708 0.28 -0.3
3,909,732 + MPMX20_03708 0.38 -1.0
3,909,732 + MPMX20_03708 0.38 -0.9
3,909,740 - MPMX20_03708 0.40 -1.0
3,909,740 - MPMX20_03708 0.40 -1.7
3,909,740 - MPMX20_03708 0.40 -2.6
3,909,750 - MPMX20_03708 0.43 +1.1
3,909,750 - MPMX20_03708 0.43 +1.3
3,909,750 - MPMX20_03708 0.43 -2.3
3,909,758 + MPMX20_03708 0.45 +1.0
3,909,760 - MPMX20_03708 0.46 -0.8
3,909,766 - MPMX20_03708 0.47 -0.6
3,909,771 + MPMX20_03708 0.49 -2.9
3,909,779 + MPMX20_03708 0.51 -0.1
3,909,779 + MPMX20_03708 0.51 -0.7
3,909,779 + MPMX20_03708 0.51 -0.8
3,909,779 + MPMX20_03708 0.51 -1.9
3,909,779 + MPMX20_03708 0.51 +2.0
3,909,779 + MPMX20_03708 0.51 +1.6
3,909,779 + MPMX20_03708 0.51 -2.4
3,909,779 + MPMX20_03708 0.51 +0.3
3,909,779 - MPMX20_03708 0.51 -2.9
3,909,779 - MPMX20_03708 0.51 -0.6
3,909,786 + MPMX20_03708 0.53 -0.8
3,909,786 + MPMX20_03708 0.53 -1.4
3,909,787 - MPMX20_03708 0.53 -0.4
3,909,787 - MPMX20_03708 0.53 +1.6
3,909,787 - MPMX20_03708 0.53 -1.0
3,909,794 - MPMX20_03708 0.55 -0.9
3,909,794 - MPMX20_03708 0.55 +1.3
3,909,794 - MPMX20_03708 0.55 +0.5
3,909,794 - MPMX20_03708 0.55 +0.6
3,909,794 - MPMX20_03708 0.55 -0.6
3,909,794 - MPMX20_03708 0.55 -1.1
3,909,794 - MPMX20_03708 0.55 +0.6
3,909,794 - MPMX20_03708 0.55 -1.3
3,909,794 - MPMX20_03708 0.55 -0.8

Or see this region's nucleotide sequence