Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03681 and MPMX20_03682 are separated by 34 nucleotides MPMX20_03682 and MPMX20_03683 overlap by 4 nucleotides
MPMX20_03681: MPMX20_03681 - Amino-acid acetyltransferase, at 3,873,657 to 3,874,988
_03681
MPMX20_03682: MPMX20_03682 - RecBCD enzyme subunit RecD, at 3,875,023 to 3,876,843
_03682
MPMX20_03683: MPMX20_03683 - RecBCD enzyme subunit RecB, at 3,876,840 to 3,880,382
_03683
Position (kb)
3875
3876
3877 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3874.067 kb on + strand, within MPMX20_03681 at 3874.180 kb on - strand, within MPMX20_03681 at 3874.219 kb on + strand, within MPMX20_03681 at 3874.219 kb on + strand, within MPMX20_03681 at 3874.227 kb on - strand, within MPMX20_03681 at 3874.227 kb on - strand, within MPMX20_03681 at 3874.227 kb on - strand, within MPMX20_03681 at 3874.287 kb on + strand, within MPMX20_03681 at 3874.295 kb on - strand, within MPMX20_03681 at 3874.342 kb on + strand, within MPMX20_03681 at 3874.352 kb on - strand, within MPMX20_03681 at 3874.357 kb on - strand, within MPMX20_03681 at 3874.385 kb on - strand, within MPMX20_03681 at 3874.414 kb on + strand, within MPMX20_03681 at 3874.535 kb on - strand, within MPMX20_03681 at 3874.537 kb on + strand, within MPMX20_03681 at 3874.600 kb on + strand, within MPMX20_03681 at 3874.602 kb on + strand, within MPMX20_03681 at 3874.618 kb on - strand, within MPMX20_03681 at 3874.621 kb on - strand, within MPMX20_03681 at 3874.633 kb on + strand, within MPMX20_03681 at 3874.633 kb on + strand, within MPMX20_03681 at 3874.649 kb on - strand, within MPMX20_03681 at 3874.669 kb on + strand, within MPMX20_03681 at 3874.692 kb on + strand, within MPMX20_03681 at 3874.728 kb on + strand, within MPMX20_03681 at 3874.775 kb on + strand, within MPMX20_03681 at 3874.820 kb on + strand, within MPMX20_03681 at 3874.847 kb on - strand, within MPMX20_03681 at 3874.891 kb on + strand at 3874.899 kb on - strand at 3874.906 kb on + strand at 3874.907 kb on + strand at 3874.915 kb on - strand at 3875.003 kb on - strand at 3875.029 kb on - strand at 3875.029 kb on - strand at 3875.127 kb on - strand at 3875.144 kb on + strand at 3875.179 kb on - strand at 3875.235 kb on - strand, within MPMX20_03682 at 3875.238 kb on + strand, within MPMX20_03682 at 3875.246 kb on - strand, within MPMX20_03682 at 3875.270 kb on + strand, within MPMX20_03682 at 3875.270 kb on + strand, within MPMX20_03682 at 3875.278 kb on - strand, within MPMX20_03682 at 3875.325 kb on + strand, within MPMX20_03682 at 3875.331 kb on + strand, within MPMX20_03682 at 3875.346 kb on - strand, within MPMX20_03682 at 3875.346 kb on - strand, within MPMX20_03682 at 3875.412 kb on + strand, within MPMX20_03682 at 3875.412 kb on + strand, within MPMX20_03682 at 3875.412 kb on + strand, within MPMX20_03682 at 3875.412 kb on + strand, within MPMX20_03682 at 3875.412 kb on + strand, within MPMX20_03682 at 3875.420 kb on - strand, within MPMX20_03682 at 3875.420 kb on - strand, within MPMX20_03682 at 3875.420 kb on - strand, within MPMX20_03682 at 3875.420 kb on - strand, within MPMX20_03682 at 3875.435 kb on - strand, within MPMX20_03682 at 3875.469 kb on + strand, within MPMX20_03682 at 3875.513 kb on - strand, within MPMX20_03682 at 3875.517 kb on - strand, within MPMX20_03682 at 3875.522 kb on + strand, within MPMX20_03682 at 3875.577 kb on + strand, within MPMX20_03682 at 3875.577 kb on + strand, within MPMX20_03682 at 3875.632 kb on - strand, within MPMX20_03682 at 3875.701 kb on + strand, within MPMX20_03682 at 3875.702 kb on + strand, within MPMX20_03682 at 3875.717 kb on + strand, within MPMX20_03682 at 3875.761 kb on + strand, within MPMX20_03682 at 3875.894 kb on - strand, within MPMX20_03682 at 3875.894 kb on - strand, within MPMX20_03682 at 3875.895 kb on - strand, within MPMX20_03682 at 3875.949 kb on - strand, within MPMX20_03682 at 3875.995 kb on - strand, within MPMX20_03682 at 3876.157 kb on + strand, within MPMX20_03682 at 3876.189 kb on - strand, within MPMX20_03682 at 3876.269 kb on + strand, within MPMX20_03682 at 3876.364 kb on + strand, within MPMX20_03682 at 3876.364 kb on + strand, within MPMX20_03682 at 3876.372 kb on - strand, within MPMX20_03682 at 3876.402 kb on + strand, within MPMX20_03682 at 3876.587 kb on + strand, within MPMX20_03682 at 3876.597 kb on + strand, within MPMX20_03682 at 3876.597 kb on - strand, within MPMX20_03682 at 3876.640 kb on + strand, within MPMX20_03682 at 3876.700 kb on + strand at 3876.783 kb on + strand at 3876.791 kb on - strand at 3876.793 kb on + strand at 3876.802 kb on + strand at 3876.941 kb on + strand at 3876.964 kb on - strand at 3877.039 kb on + strand at 3877.039 kb on + strand at 3877.047 kb on - strand at 3877.109 kb on - strand at 3877.373 kb on - strand, within MPMX20_03683 at 3877.394 kb on - strand, within MPMX20_03683 at 3877.578 kb on - strand, within MPMX20_03683 at 3877.688 kb on + strand, within MPMX20_03683
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 3,874,067 + MPMX20_03681 0.31 -2.8 3,874,180 - MPMX20_03681 0.39 -2.7 3,874,219 + MPMX20_03681 0.42 -2.8 3,874,219 + MPMX20_03681 0.42 -1.6 3,874,227 - MPMX20_03681 0.43 -4.3 3,874,227 - MPMX20_03681 0.43 +0.6 3,874,227 - MPMX20_03681 0.43 -2.7 3,874,287 + MPMX20_03681 0.47 -0.6 3,874,295 - MPMX20_03681 0.48 -1.1 3,874,342 + MPMX20_03681 0.51 -2.9 3,874,352 - MPMX20_03681 0.52 -0.9 3,874,357 - MPMX20_03681 0.53 -1.3 3,874,385 - MPMX20_03681 0.55 +1.6 3,874,414 + MPMX20_03681 0.57 -0.2 3,874,535 - MPMX20_03681 0.66 -1.9 3,874,537 + MPMX20_03681 0.66 -1.2 3,874,600 + MPMX20_03681 0.71 -2.3 3,874,602 + MPMX20_03681 0.71 -1.9 3,874,618 - MPMX20_03681 0.72 -3.1 3,874,621 - MPMX20_03681 0.72 -0.0 3,874,633 + MPMX20_03681 0.73 -1.8 3,874,633 + MPMX20_03681 0.73 -1.2 3,874,649 - MPMX20_03681 0.74 -2.1 3,874,669 + MPMX20_03681 0.76 -2.4 3,874,692 + MPMX20_03681 0.78 -1.6 3,874,728 + MPMX20_03681 0.80 -2.3 3,874,775 + MPMX20_03681 0.84 -2.9 3,874,820 + MPMX20_03681 0.87 -3.1 3,874,847 - MPMX20_03681 0.89 -2.0 3,874,891 + +1.0 3,874,899 - -2.6 3,874,906 + +0.1 3,874,907 + -1.3 3,874,915 - -3.7 3,875,003 - +0.3 3,875,029 - -2.8 3,875,029 - -0.2 3,875,127 - -0.2 3,875,144 + +1.6 3,875,179 - +1.4 3,875,235 - MPMX20_03682 0.12 -1.5 3,875,238 + MPMX20_03682 0.12 -0.6 3,875,246 - MPMX20_03682 0.12 -0.1 3,875,270 + MPMX20_03682 0.14 +0.8 3,875,270 + MPMX20_03682 0.14 -0.5 3,875,278 - MPMX20_03682 0.14 +0.4 3,875,325 + MPMX20_03682 0.17 -1.3 3,875,331 + MPMX20_03682 0.17 -3.2 3,875,346 - MPMX20_03682 0.18 -2.5 3,875,346 - MPMX20_03682 0.18 -0.8 3,875,412 + MPMX20_03682 0.21 -1.7 3,875,412 + MPMX20_03682 0.21 -1.2 3,875,412 + MPMX20_03682 0.21 -3.3 3,875,412 + MPMX20_03682 0.21 +0.6 3,875,412 + MPMX20_03682 0.21 -2.1 3,875,420 - MPMX20_03682 0.22 +0.2 3,875,420 - MPMX20_03682 0.22 -0.6 3,875,420 - MPMX20_03682 0.22 -1.2 3,875,420 - MPMX20_03682 0.22 -1.2 3,875,435 - MPMX20_03682 0.23 +0.7 3,875,469 + MPMX20_03682 0.24 -1.8 3,875,513 - MPMX20_03682 0.27 -1.7 3,875,517 - MPMX20_03682 0.27 -0.2 3,875,522 + MPMX20_03682 0.27 +1.2 3,875,577 + MPMX20_03682 0.30 +2.2 3,875,577 + MPMX20_03682 0.30 +1.6 3,875,632 - MPMX20_03682 0.33 +0.6 3,875,701 + MPMX20_03682 0.37 +1.2 3,875,702 + MPMX20_03682 0.37 -0.2 3,875,717 + MPMX20_03682 0.38 +0.2 3,875,761 + MPMX20_03682 0.41 +3.2 3,875,894 - MPMX20_03682 0.48 -0.4 3,875,894 - MPMX20_03682 0.48 -1.7 3,875,895 - MPMX20_03682 0.48 +1.6 3,875,949 - MPMX20_03682 0.51 +0.1 3,875,995 - MPMX20_03682 0.53 -1.6 3,876,157 + MPMX20_03682 0.62 +0.5 3,876,189 - MPMX20_03682 0.64 -1.3 3,876,269 + MPMX20_03682 0.68 -2.1 3,876,364 + MPMX20_03682 0.74 -0.4 3,876,364 + MPMX20_03682 0.74 +0.6 3,876,372 - MPMX20_03682 0.74 -1.2 3,876,402 + MPMX20_03682 0.76 -1.0 3,876,587 + MPMX20_03682 0.86 +0.2 3,876,597 + MPMX20_03682 0.86 -2.8 3,876,597 - MPMX20_03682 0.86 -1.4 3,876,640 + MPMX20_03682 0.89 -0.6 3,876,700 + -0.4 3,876,783 + -0.7 3,876,791 - -0.6 3,876,793 + +1.0 3,876,802 + -0.3 3,876,941 + -0.4 3,876,964 - +2.6 3,877,039 + +0.6 3,877,039 + +0.2 3,877,047 - -0.2 3,877,109 - -0.8 3,877,373 - MPMX20_03683 0.15 -0.4 3,877,394 - MPMX20_03683 0.16 +0.6 3,877,578 - MPMX20_03683 0.21 +0.2 3,877,688 + MPMX20_03683 0.24 +1.0
Or see this region's nucleotide sequence