Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03682

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03681 and MPMX20_03682 are separated by 34 nucleotidesMPMX20_03682 and MPMX20_03683 overlap by 4 nucleotides MPMX20_03681: MPMX20_03681 - Amino-acid acetyltransferase, at 3,873,657 to 3,874,988 _03681 MPMX20_03682: MPMX20_03682 - RecBCD enzyme subunit RecD, at 3,875,023 to 3,876,843 _03682 MPMX20_03683: MPMX20_03683 - RecBCD enzyme subunit RecB, at 3,876,840 to 3,880,382 _03683 Position (kb) 3875 3876 3877Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3874.067 kb on + strand, within MPMX20_03681at 3874.180 kb on - strand, within MPMX20_03681at 3874.219 kb on + strand, within MPMX20_03681at 3874.219 kb on + strand, within MPMX20_03681at 3874.227 kb on - strand, within MPMX20_03681at 3874.227 kb on - strand, within MPMX20_03681at 3874.227 kb on - strand, within MPMX20_03681at 3874.287 kb on + strand, within MPMX20_03681at 3874.295 kb on - strand, within MPMX20_03681at 3874.342 kb on + strand, within MPMX20_03681at 3874.352 kb on - strand, within MPMX20_03681at 3874.357 kb on - strand, within MPMX20_03681at 3874.385 kb on - strand, within MPMX20_03681at 3874.414 kb on + strand, within MPMX20_03681at 3874.535 kb on - strand, within MPMX20_03681at 3874.537 kb on + strand, within MPMX20_03681at 3874.600 kb on + strand, within MPMX20_03681at 3874.602 kb on + strand, within MPMX20_03681at 3874.618 kb on - strand, within MPMX20_03681at 3874.621 kb on - strand, within MPMX20_03681at 3874.633 kb on + strand, within MPMX20_03681at 3874.633 kb on + strand, within MPMX20_03681at 3874.649 kb on - strand, within MPMX20_03681at 3874.669 kb on + strand, within MPMX20_03681at 3874.692 kb on + strand, within MPMX20_03681at 3874.728 kb on + strand, within MPMX20_03681at 3874.775 kb on + strand, within MPMX20_03681at 3874.820 kb on + strand, within MPMX20_03681at 3874.847 kb on - strand, within MPMX20_03681at 3874.891 kb on + strandat 3874.899 kb on - strandat 3874.906 kb on + strandat 3874.907 kb on + strandat 3874.915 kb on - strandat 3875.003 kb on - strandat 3875.029 kb on - strandat 3875.029 kb on - strandat 3875.127 kb on - strandat 3875.144 kb on + strandat 3875.179 kb on - strandat 3875.235 kb on - strand, within MPMX20_03682at 3875.238 kb on + strand, within MPMX20_03682at 3875.246 kb on - strand, within MPMX20_03682at 3875.270 kb on + strand, within MPMX20_03682at 3875.270 kb on + strand, within MPMX20_03682at 3875.278 kb on - strand, within MPMX20_03682at 3875.325 kb on + strand, within MPMX20_03682at 3875.331 kb on + strand, within MPMX20_03682at 3875.346 kb on - strand, within MPMX20_03682at 3875.346 kb on - strand, within MPMX20_03682at 3875.412 kb on + strand, within MPMX20_03682at 3875.412 kb on + strand, within MPMX20_03682at 3875.412 kb on + strand, within MPMX20_03682at 3875.412 kb on + strand, within MPMX20_03682at 3875.412 kb on + strand, within MPMX20_03682at 3875.420 kb on - strand, within MPMX20_03682at 3875.420 kb on - strand, within MPMX20_03682at 3875.420 kb on - strand, within MPMX20_03682at 3875.420 kb on - strand, within MPMX20_03682at 3875.435 kb on - strand, within MPMX20_03682at 3875.469 kb on + strand, within MPMX20_03682at 3875.513 kb on - strand, within MPMX20_03682at 3875.517 kb on - strand, within MPMX20_03682at 3875.522 kb on + strand, within MPMX20_03682at 3875.577 kb on + strand, within MPMX20_03682at 3875.577 kb on + strand, within MPMX20_03682at 3875.632 kb on - strand, within MPMX20_03682at 3875.701 kb on + strand, within MPMX20_03682at 3875.702 kb on + strand, within MPMX20_03682at 3875.717 kb on + strand, within MPMX20_03682at 3875.761 kb on + strand, within MPMX20_03682at 3875.894 kb on - strand, within MPMX20_03682at 3875.894 kb on - strand, within MPMX20_03682at 3875.895 kb on - strand, within MPMX20_03682at 3875.949 kb on - strand, within MPMX20_03682at 3875.995 kb on - strand, within MPMX20_03682at 3876.157 kb on + strand, within MPMX20_03682at 3876.189 kb on - strand, within MPMX20_03682at 3876.269 kb on + strand, within MPMX20_03682at 3876.364 kb on + strand, within MPMX20_03682at 3876.364 kb on + strand, within MPMX20_03682at 3876.372 kb on - strand, within MPMX20_03682at 3876.402 kb on + strand, within MPMX20_03682at 3876.587 kb on + strand, within MPMX20_03682at 3876.597 kb on + strand, within MPMX20_03682at 3876.597 kb on - strand, within MPMX20_03682at 3876.640 kb on + strand, within MPMX20_03682at 3876.700 kb on + strandat 3876.783 kb on + strandat 3876.791 kb on - strandat 3876.793 kb on + strandat 3876.802 kb on + strandat 3876.941 kb on + strandat 3876.964 kb on - strandat 3877.039 kb on + strandat 3877.039 kb on + strandat 3877.047 kb on - strandat 3877.109 kb on - strandat 3877.373 kb on - strand, within MPMX20_03683at 3877.394 kb on - strand, within MPMX20_03683at 3877.578 kb on - strand, within MPMX20_03683at 3877.688 kb on + strand, within MPMX20_03683

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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3,874,067 + MPMX20_03681 0.31 -2.8
3,874,180 - MPMX20_03681 0.39 -2.7
3,874,219 + MPMX20_03681 0.42 -2.8
3,874,219 + MPMX20_03681 0.42 -1.6
3,874,227 - MPMX20_03681 0.43 -4.3
3,874,227 - MPMX20_03681 0.43 +0.6
3,874,227 - MPMX20_03681 0.43 -2.7
3,874,287 + MPMX20_03681 0.47 -0.6
3,874,295 - MPMX20_03681 0.48 -1.1
3,874,342 + MPMX20_03681 0.51 -2.9
3,874,352 - MPMX20_03681 0.52 -0.9
3,874,357 - MPMX20_03681 0.53 -1.3
3,874,385 - MPMX20_03681 0.55 +1.6
3,874,414 + MPMX20_03681 0.57 -0.2
3,874,535 - MPMX20_03681 0.66 -1.9
3,874,537 + MPMX20_03681 0.66 -1.2
3,874,600 + MPMX20_03681 0.71 -2.3
3,874,602 + MPMX20_03681 0.71 -1.9
3,874,618 - MPMX20_03681 0.72 -3.1
3,874,621 - MPMX20_03681 0.72 -0.0
3,874,633 + MPMX20_03681 0.73 -1.8
3,874,633 + MPMX20_03681 0.73 -1.2
3,874,649 - MPMX20_03681 0.74 -2.1
3,874,669 + MPMX20_03681 0.76 -2.4
3,874,692 + MPMX20_03681 0.78 -1.6
3,874,728 + MPMX20_03681 0.80 -2.3
3,874,775 + MPMX20_03681 0.84 -2.9
3,874,820 + MPMX20_03681 0.87 -3.1
3,874,847 - MPMX20_03681 0.89 -2.0
3,874,891 + +1.0
3,874,899 - -2.6
3,874,906 + +0.1
3,874,907 + -1.3
3,874,915 - -3.7
3,875,003 - +0.3
3,875,029 - -2.8
3,875,029 - -0.2
3,875,127 - -0.2
3,875,144 + +1.6
3,875,179 - +1.4
3,875,235 - MPMX20_03682 0.12 -1.5
3,875,238 + MPMX20_03682 0.12 -0.6
3,875,246 - MPMX20_03682 0.12 -0.1
3,875,270 + MPMX20_03682 0.14 +0.8
3,875,270 + MPMX20_03682 0.14 -0.5
3,875,278 - MPMX20_03682 0.14 +0.4
3,875,325 + MPMX20_03682 0.17 -1.3
3,875,331 + MPMX20_03682 0.17 -3.2
3,875,346 - MPMX20_03682 0.18 -2.5
3,875,346 - MPMX20_03682 0.18 -0.8
3,875,412 + MPMX20_03682 0.21 -1.7
3,875,412 + MPMX20_03682 0.21 -1.2
3,875,412 + MPMX20_03682 0.21 -3.3
3,875,412 + MPMX20_03682 0.21 +0.6
3,875,412 + MPMX20_03682 0.21 -2.1
3,875,420 - MPMX20_03682 0.22 +0.2
3,875,420 - MPMX20_03682 0.22 -0.6
3,875,420 - MPMX20_03682 0.22 -1.2
3,875,420 - MPMX20_03682 0.22 -1.2
3,875,435 - MPMX20_03682 0.23 +0.7
3,875,469 + MPMX20_03682 0.24 -1.8
3,875,513 - MPMX20_03682 0.27 -1.7
3,875,517 - MPMX20_03682 0.27 -0.2
3,875,522 + MPMX20_03682 0.27 +1.2
3,875,577 + MPMX20_03682 0.30 +2.2
3,875,577 + MPMX20_03682 0.30 +1.6
3,875,632 - MPMX20_03682 0.33 +0.6
3,875,701 + MPMX20_03682 0.37 +1.2
3,875,702 + MPMX20_03682 0.37 -0.2
3,875,717 + MPMX20_03682 0.38 +0.2
3,875,761 + MPMX20_03682 0.41 +3.2
3,875,894 - MPMX20_03682 0.48 -0.4
3,875,894 - MPMX20_03682 0.48 -1.7
3,875,895 - MPMX20_03682 0.48 +1.6
3,875,949 - MPMX20_03682 0.51 +0.1
3,875,995 - MPMX20_03682 0.53 -1.6
3,876,157 + MPMX20_03682 0.62 +0.5
3,876,189 - MPMX20_03682 0.64 -1.3
3,876,269 + MPMX20_03682 0.68 -2.1
3,876,364 + MPMX20_03682 0.74 -0.4
3,876,364 + MPMX20_03682 0.74 +0.6
3,876,372 - MPMX20_03682 0.74 -1.2
3,876,402 + MPMX20_03682 0.76 -1.0
3,876,587 + MPMX20_03682 0.86 +0.2
3,876,597 + MPMX20_03682 0.86 -2.8
3,876,597 - MPMX20_03682 0.86 -1.4
3,876,640 + MPMX20_03682 0.89 -0.6
3,876,700 + -0.4
3,876,783 + -0.7
3,876,791 - -0.6
3,876,793 + +1.0
3,876,802 + -0.3
3,876,941 + -0.4
3,876,964 - +2.6
3,877,039 + +0.6
3,877,039 + +0.2
3,877,047 - -0.2
3,877,109 - -0.8
3,877,373 - MPMX20_03683 0.15 -0.4
3,877,394 - MPMX20_03683 0.16 +0.6
3,877,578 - MPMX20_03683 0.21 +0.2
3,877,688 + MPMX20_03683 0.24 +1.0

Or see this region's nucleotide sequence