Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03680 and MPMX20_03681 are separated by 227 nucleotides MPMX20_03681 and MPMX20_03682 are separated by 34 nucleotides
MPMX20_03680: MPMX20_03680 - N-acetylmuramoyl-L-alanine amidase AmiC, at 3,872,176 to 3,873,429
_03680
MPMX20_03681: MPMX20_03681 - Amino-acid acetyltransferase, at 3,873,657 to 3,874,988
_03681
MPMX20_03682: MPMX20_03682 - RecBCD enzyme subunit RecD, at 3,875,023 to 3,876,843
_03682
Position (kb)
3873
3874
3875 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3872.660 kb on - strand, within MPMX20_03680 at 3872.844 kb on + strand, within MPMX20_03680 at 3872.844 kb on + strand, within MPMX20_03680 at 3872.868 kb on - strand, within MPMX20_03680 at 3872.905 kb on + strand, within MPMX20_03680 at 3872.938 kb on + strand, within MPMX20_03680 at 3872.951 kb on - strand, within MPMX20_03680 at 3873.014 kb on + strand, within MPMX20_03680 at 3873.016 kb on - strand, within MPMX20_03680 at 3873.048 kb on + strand, within MPMX20_03680 at 3873.101 kb on - strand, within MPMX20_03680 at 3873.185 kb on + strand, within MPMX20_03680 at 3873.192 kb on + strand, within MPMX20_03680 at 3873.201 kb on - strand, within MPMX20_03680 at 3873.208 kb on - strand, within MPMX20_03680 at 3873.208 kb on - strand, within MPMX20_03680 at 3873.235 kb on - strand, within MPMX20_03680 at 3873.286 kb on + strand, within MPMX20_03680 at 3873.300 kb on - strand, within MPMX20_03680 at 3873.317 kb on + strand at 3873.321 kb on - strand at 3873.531 kb on + strand at 3873.681 kb on - strand at 3873.683 kb on + strand at 3873.799 kb on + strand, within MPMX20_03681 at 3873.807 kb on - strand, within MPMX20_03681 at 3873.817 kb on + strand, within MPMX20_03681 at 3873.817 kb on + strand, within MPMX20_03681 at 3873.818 kb on - strand, within MPMX20_03681 at 3873.823 kb on + strand, within MPMX20_03681 at 3873.839 kb on + strand, within MPMX20_03681 at 3873.842 kb on - strand, within MPMX20_03681 at 3873.902 kb on + strand, within MPMX20_03681 at 3873.906 kb on + strand, within MPMX20_03681 at 3873.934 kb on + strand, within MPMX20_03681 at 3873.934 kb on + strand, within MPMX20_03681 at 3873.934 kb on + strand, within MPMX20_03681 at 3873.942 kb on - strand, within MPMX20_03681 at 3873.942 kb on - strand, within MPMX20_03681 at 3873.960 kb on + strand, within MPMX20_03681 at 3873.982 kb on - strand, within MPMX20_03681 at 3873.982 kb on - strand, within MPMX20_03681 at 3873.990 kb on - strand, within MPMX20_03681 at 3874.007 kb on - strand, within MPMX20_03681 at 3874.067 kb on + strand, within MPMX20_03681 at 3874.180 kb on - strand, within MPMX20_03681 at 3874.219 kb on + strand, within MPMX20_03681 at 3874.219 kb on + strand, within MPMX20_03681 at 3874.227 kb on - strand, within MPMX20_03681 at 3874.227 kb on - strand, within MPMX20_03681 at 3874.227 kb on - strand, within MPMX20_03681 at 3874.287 kb on + strand, within MPMX20_03681 at 3874.295 kb on - strand, within MPMX20_03681 at 3874.342 kb on + strand, within MPMX20_03681 at 3874.352 kb on - strand, within MPMX20_03681 at 3874.357 kb on - strand, within MPMX20_03681 at 3874.385 kb on - strand, within MPMX20_03681 at 3874.414 kb on + strand, within MPMX20_03681 at 3874.535 kb on - strand, within MPMX20_03681 at 3874.537 kb on + strand, within MPMX20_03681 at 3874.600 kb on + strand, within MPMX20_03681 at 3874.602 kb on + strand, within MPMX20_03681 at 3874.618 kb on - strand, within MPMX20_03681 at 3874.621 kb on - strand, within MPMX20_03681 at 3874.633 kb on + strand, within MPMX20_03681 at 3874.633 kb on + strand, within MPMX20_03681 at 3874.649 kb on - strand, within MPMX20_03681 at 3874.669 kb on + strand, within MPMX20_03681 at 3874.692 kb on + strand, within MPMX20_03681 at 3874.728 kb on + strand, within MPMX20_03681 at 3874.775 kb on + strand, within MPMX20_03681 at 3874.820 kb on + strand, within MPMX20_03681 at 3874.847 kb on - strand, within MPMX20_03681 at 3874.891 kb on + strand at 3874.899 kb on - strand at 3874.906 kb on + strand at 3874.907 kb on + strand at 3874.915 kb on - strand at 3875.003 kb on - strand at 3875.029 kb on - strand at 3875.029 kb on - strand at 3875.127 kb on - strand at 3875.144 kb on + strand at 3875.179 kb on - strand at 3875.235 kb on - strand, within MPMX20_03682 at 3875.238 kb on + strand, within MPMX20_03682 at 3875.246 kb on - strand, within MPMX20_03682 at 3875.270 kb on + strand, within MPMX20_03682 at 3875.270 kb on + strand, within MPMX20_03682 at 3875.278 kb on - strand, within MPMX20_03682 at 3875.325 kb on + strand, within MPMX20_03682 at 3875.331 kb on + strand, within MPMX20_03682 at 3875.346 kb on - strand, within MPMX20_03682 at 3875.346 kb on - strand, within MPMX20_03682 at 3875.412 kb on + strand, within MPMX20_03682 at 3875.412 kb on + strand, within MPMX20_03682 at 3875.412 kb on + strand, within MPMX20_03682 at 3875.412 kb on + strand, within MPMX20_03682 at 3875.412 kb on + strand, within MPMX20_03682 at 3875.420 kb on - strand, within MPMX20_03682 at 3875.420 kb on - strand, within MPMX20_03682 at 3875.420 kb on - strand, within MPMX20_03682 at 3875.420 kb on - strand, within MPMX20_03682 at 3875.435 kb on - strand, within MPMX20_03682 at 3875.469 kb on + strand, within MPMX20_03682 at 3875.513 kb on - strand, within MPMX20_03682 at 3875.517 kb on - strand, within MPMX20_03682 at 3875.522 kb on + strand, within MPMX20_03682 at 3875.577 kb on + strand, within MPMX20_03682 at 3875.577 kb on + strand, within MPMX20_03682 at 3875.632 kb on - strand, within MPMX20_03682 at 3875.701 kb on + strand, within MPMX20_03682 at 3875.702 kb on + strand, within MPMX20_03682 at 3875.717 kb on + strand, within MPMX20_03682 at 3875.761 kb on + strand, within MPMX20_03682 at 3875.894 kb on - strand, within MPMX20_03682 at 3875.894 kb on - strand, within MPMX20_03682 at 3875.949 kb on - strand, within MPMX20_03682
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 3,872,660 - MPMX20_03680 0.39 -2.8 3,872,844 + MPMX20_03680 0.53 -0.0 3,872,844 + MPMX20_03680 0.53 -1.7 3,872,868 - MPMX20_03680 0.55 -1.2 3,872,905 + MPMX20_03680 0.58 -0.5 3,872,938 + MPMX20_03680 0.61 +0.1 3,872,951 - MPMX20_03680 0.62 -1.2 3,873,014 + MPMX20_03680 0.67 -1.0 3,873,016 - MPMX20_03680 0.67 +1.6 3,873,048 + MPMX20_03680 0.70 +0.3 3,873,101 - MPMX20_03680 0.74 -1.9 3,873,185 + MPMX20_03680 0.80 -1.3 3,873,192 + MPMX20_03680 0.81 +0.8 3,873,201 - MPMX20_03680 0.82 -3.4 3,873,208 - MPMX20_03680 0.82 -2.1 3,873,208 - MPMX20_03680 0.82 -0.1 3,873,235 - MPMX20_03680 0.84 -0.6 3,873,286 + MPMX20_03680 0.89 -2.8 3,873,300 - MPMX20_03680 0.90 -0.8 3,873,317 + -0.0 3,873,321 - -0.4 3,873,531 + -1.6 3,873,681 - -2.6 3,873,683 + -2.0 3,873,799 + MPMX20_03681 0.11 -3.2 3,873,807 - MPMX20_03681 0.11 -2.1 3,873,817 + MPMX20_03681 0.12 +0.6 3,873,817 + MPMX20_03681 0.12 +2.6 3,873,818 - MPMX20_03681 0.12 -0.0 3,873,823 + MPMX20_03681 0.12 -0.0 3,873,839 + MPMX20_03681 0.14 -3.1 3,873,842 - MPMX20_03681 0.14 -2.9 3,873,902 + MPMX20_03681 0.18 -0.0 3,873,906 + MPMX20_03681 0.19 +1.6 3,873,934 + MPMX20_03681 0.21 -2.4 3,873,934 + MPMX20_03681 0.21 -2.8 3,873,934 + MPMX20_03681 0.21 -2.5 3,873,942 - MPMX20_03681 0.21 -2.8 3,873,942 - MPMX20_03681 0.21 -3.0 3,873,960 + MPMX20_03681 0.23 -0.9 3,873,982 - MPMX20_03681 0.24 -1.6 3,873,982 - MPMX20_03681 0.24 -2.3 3,873,990 - MPMX20_03681 0.25 -2.8 3,874,007 - MPMX20_03681 0.26 -4.6 3,874,067 + MPMX20_03681 0.31 -2.8 3,874,180 - MPMX20_03681 0.39 -2.7 3,874,219 + MPMX20_03681 0.42 -2.8 3,874,219 + MPMX20_03681 0.42 -1.6 3,874,227 - MPMX20_03681 0.43 -4.3 3,874,227 - MPMX20_03681 0.43 +0.6 3,874,227 - MPMX20_03681 0.43 -2.7 3,874,287 + MPMX20_03681 0.47 -0.6 3,874,295 - MPMX20_03681 0.48 -1.1 3,874,342 + MPMX20_03681 0.51 -2.9 3,874,352 - MPMX20_03681 0.52 -0.9 3,874,357 - MPMX20_03681 0.53 -1.3 3,874,385 - MPMX20_03681 0.55 +1.6 3,874,414 + MPMX20_03681 0.57 -0.2 3,874,535 - MPMX20_03681 0.66 -1.9 3,874,537 + MPMX20_03681 0.66 -1.2 3,874,600 + MPMX20_03681 0.71 -2.3 3,874,602 + MPMX20_03681 0.71 -1.9 3,874,618 - MPMX20_03681 0.72 -3.1 3,874,621 - MPMX20_03681 0.72 -0.0 3,874,633 + MPMX20_03681 0.73 -1.8 3,874,633 + MPMX20_03681 0.73 -1.2 3,874,649 - MPMX20_03681 0.74 -2.1 3,874,669 + MPMX20_03681 0.76 -2.4 3,874,692 + MPMX20_03681 0.78 -1.6 3,874,728 + MPMX20_03681 0.80 -2.3 3,874,775 + MPMX20_03681 0.84 -2.9 3,874,820 + MPMX20_03681 0.87 -3.1 3,874,847 - MPMX20_03681 0.89 -2.0 3,874,891 + +1.0 3,874,899 - -2.6 3,874,906 + +0.1 3,874,907 + -1.3 3,874,915 - -3.7 3,875,003 - +0.3 3,875,029 - -2.8 3,875,029 - -0.2 3,875,127 - -0.2 3,875,144 + +1.6 3,875,179 - +1.4 3,875,235 - MPMX20_03682 0.12 -1.5 3,875,238 + MPMX20_03682 0.12 -0.6 3,875,246 - MPMX20_03682 0.12 -0.1 3,875,270 + MPMX20_03682 0.14 +0.8 3,875,270 + MPMX20_03682 0.14 -0.6 3,875,278 - MPMX20_03682 0.14 +0.4 3,875,325 + MPMX20_03682 0.17 -1.3 3,875,331 + MPMX20_03682 0.17 -3.2 3,875,346 - MPMX20_03682 0.18 -2.5 3,875,346 - MPMX20_03682 0.18 -0.9 3,875,412 + MPMX20_03682 0.21 -1.7 3,875,412 + MPMX20_03682 0.21 -1.2 3,875,412 + MPMX20_03682 0.21 -3.3 3,875,412 + MPMX20_03682 0.21 +0.6 3,875,412 + MPMX20_03682 0.21 -2.1 3,875,420 - MPMX20_03682 0.22 +0.2 3,875,420 - MPMX20_03682 0.22 -0.6 3,875,420 - MPMX20_03682 0.22 -1.2 3,875,420 - MPMX20_03682 0.22 -1.2 3,875,435 - MPMX20_03682 0.23 +0.7 3,875,469 + MPMX20_03682 0.24 -1.8 3,875,513 - MPMX20_03682 0.27 -1.7 3,875,517 - MPMX20_03682 0.27 -0.2 3,875,522 + MPMX20_03682 0.27 +1.2 3,875,577 + MPMX20_03682 0.30 +2.2 3,875,577 + MPMX20_03682 0.30 +1.6 3,875,632 - MPMX20_03682 0.33 +0.6 3,875,701 + MPMX20_03682 0.37 +1.2 3,875,702 + MPMX20_03682 0.37 -0.2 3,875,717 + MPMX20_03682 0.38 +0.2 3,875,761 + MPMX20_03682 0.41 +3.1 3,875,894 - MPMX20_03682 0.48 -0.4 3,875,894 - MPMX20_03682 0.48 -1.7 3,875,949 - MPMX20_03682 0.51 +0.1
Or see this region's nucleotide sequence