Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03667 and MPMX20_03668 are separated by 112 nucleotides MPMX20_03668 and MPMX20_03669 are separated by 57 nucleotides
MPMX20_03667: MPMX20_03667 - L-serine dehydratase 2, at 3,862,419 to 3,863,786
_03667
MPMX20_03668: MPMX20_03668 - Flap endonuclease Xni, at 3,863,899 to 3,864,654
_03668
MPMX20_03669: MPMX20_03669 - Ribosomal RNA large subunit methyltransferase M, at 3,864,712 to 3,865,812
_03669
Position (kb)
3863
3864
3865 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3863.018 kb on - strand, within MPMX20_03667 at 3863.040 kb on + strand, within MPMX20_03667 at 3863.042 kb on + strand, within MPMX20_03667 at 3863.050 kb on - strand, within MPMX20_03667 at 3863.266 kb on - strand, within MPMX20_03667 at 3863.273 kb on + strand, within MPMX20_03667 at 3863.281 kb on - strand, within MPMX20_03667 at 3863.304 kb on + strand, within MPMX20_03667 at 3863.309 kb on + strand, within MPMX20_03667 at 3863.494 kb on + strand, within MPMX20_03667 at 3863.510 kb on + strand, within MPMX20_03667 at 3863.510 kb on + strand, within MPMX20_03667 at 3863.510 kb on + strand, within MPMX20_03667 at 3863.510 kb on + strand, within MPMX20_03667 at 3863.512 kb on + strand, within MPMX20_03667 at 3863.518 kb on - strand, within MPMX20_03667 at 3863.553 kb on - strand, within MPMX20_03667 at 3863.558 kb on - strand, within MPMX20_03667 at 3863.579 kb on + strand, within MPMX20_03667 at 3863.627 kb on + strand, within MPMX20_03667 at 3863.635 kb on - strand, within MPMX20_03667 at 3863.654 kb on - strand at 3863.659 kb on + strand at 3863.725 kb on + strand at 3863.868 kb on - strand at 3863.935 kb on - strand at 3863.964 kb on - strand at 3863.964 kb on - strand at 3863.976 kb on + strand, within MPMX20_03668 at 3864.057 kb on + strand, within MPMX20_03668 at 3864.158 kb on + strand, within MPMX20_03668 at 3864.158 kb on + strand, within MPMX20_03668 at 3864.166 kb on - strand, within MPMX20_03668 at 3864.166 kb on - strand, within MPMX20_03668 at 3864.166 kb on - strand, within MPMX20_03668 at 3864.166 kb on - strand, within MPMX20_03668 at 3864.166 kb on - strand, within MPMX20_03668 at 3864.166 kb on - strand, within MPMX20_03668 at 3864.182 kb on + strand, within MPMX20_03668 at 3864.188 kb on - strand, within MPMX20_03668 at 3864.188 kb on - strand, within MPMX20_03668 at 3864.188 kb on - strand, within MPMX20_03668 at 3864.190 kb on - strand, within MPMX20_03668 at 3864.198 kb on - strand, within MPMX20_03668 at 3864.198 kb on - strand, within MPMX20_03668 at 3864.341 kb on + strand, within MPMX20_03668 at 3864.349 kb on - strand, within MPMX20_03668 at 3864.369 kb on + strand, within MPMX20_03668 at 3864.401 kb on + strand, within MPMX20_03668 at 3864.409 kb on - strand, within MPMX20_03668 at 3864.409 kb on - strand, within MPMX20_03668 at 3864.433 kb on - strand, within MPMX20_03668 at 3864.462 kb on + strand, within MPMX20_03668 at 3864.462 kb on + strand, within MPMX20_03668 at 3864.502 kb on - strand, within MPMX20_03668 at 3864.557 kb on + strand, within MPMX20_03668 at 3864.579 kb on - strand at 3864.699 kb on + strand at 3864.793 kb on - strand at 3864.821 kb on - strand at 3864.821 kb on - strand at 3864.821 kb on - strand at 3864.901 kb on + strand, within MPMX20_03669 at 3864.901 kb on + strand, within MPMX20_03669 at 3864.908 kb on - strand, within MPMX20_03669 at 3864.909 kb on - strand, within MPMX20_03669 at 3865.020 kb on - strand, within MPMX20_03669 at 3865.135 kb on + strand, within MPMX20_03669 at 3865.178 kb on - strand, within MPMX20_03669 at 3865.190 kb on + strand, within MPMX20_03669 at 3865.319 kb on + strand, within MPMX20_03669 at 3865.319 kb on + strand, within MPMX20_03669 at 3865.332 kb on - strand, within MPMX20_03669 at 3865.425 kb on - strand, within MPMX20_03669 at 3865.430 kb on - strand, within MPMX20_03669 at 3865.430 kb on - strand, within MPMX20_03669 at 3865.442 kb on - strand, within MPMX20_03669 at 3865.442 kb on - strand, within MPMX20_03669 at 3865.620 kb on + strand, within MPMX20_03669
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 3,863,018 - MPMX20_03667 0.44 -1.1 3,863,040 + MPMX20_03667 0.45 +0.7 3,863,042 + MPMX20_03667 0.46 -0.5 3,863,050 - MPMX20_03667 0.46 -0.0 3,863,266 - MPMX20_03667 0.62 +0.6 3,863,273 + MPMX20_03667 0.62 +1.0 3,863,281 - MPMX20_03667 0.63 -1.7 3,863,304 + MPMX20_03667 0.65 -0.0 3,863,309 + MPMX20_03667 0.65 +0.3 3,863,494 + MPMX20_03667 0.79 -0.1 3,863,510 + MPMX20_03667 0.80 +2.6 3,863,510 + MPMX20_03667 0.80 +1.3 3,863,510 + MPMX20_03667 0.80 -1.1 3,863,510 + MPMX20_03667 0.80 +0.4 3,863,512 + MPMX20_03667 0.80 -0.4 3,863,518 - MPMX20_03667 0.80 -2.1 3,863,553 - MPMX20_03667 0.83 -1.9 3,863,558 - MPMX20_03667 0.83 +0.6 3,863,579 + MPMX20_03667 0.85 -1.3 3,863,627 + MPMX20_03667 0.88 -0.3 3,863,635 - MPMX20_03667 0.89 +3.0 3,863,654 - -1.4 3,863,659 + -0.6 3,863,725 + -1.0 3,863,868 - +0.2 3,863,935 - +1.1 3,863,964 - -0.3 3,863,964 - -2.1 3,863,976 + MPMX20_03668 0.10 -2.1 3,864,057 + MPMX20_03668 0.21 -1.8 3,864,158 + MPMX20_03668 0.34 -0.0 3,864,158 + MPMX20_03668 0.34 +1.8 3,864,166 - MPMX20_03668 0.35 +1.2 3,864,166 - MPMX20_03668 0.35 -0.1 3,864,166 - MPMX20_03668 0.35 -0.7 3,864,166 - MPMX20_03668 0.35 +0.6 3,864,166 - MPMX20_03668 0.35 -0.9 3,864,166 - MPMX20_03668 0.35 +0.3 3,864,182 + MPMX20_03668 0.37 +0.6 3,864,188 - MPMX20_03668 0.38 +0.6 3,864,188 - MPMX20_03668 0.38 -1.2 3,864,188 - MPMX20_03668 0.38 -0.4 3,864,190 - MPMX20_03668 0.38 +0.6 3,864,198 - MPMX20_03668 0.40 +0.6 3,864,198 - MPMX20_03668 0.40 -0.0 3,864,341 + MPMX20_03668 0.58 -1.4 3,864,349 - MPMX20_03668 0.60 +3.6 3,864,369 + MPMX20_03668 0.62 +0.4 3,864,401 + MPMX20_03668 0.66 -0.2 3,864,409 - MPMX20_03668 0.67 -2.9 3,864,409 - MPMX20_03668 0.67 +0.9 3,864,433 - MPMX20_03668 0.71 -0.0 3,864,462 + MPMX20_03668 0.74 -1.3 3,864,462 + MPMX20_03668 0.74 +0.1 3,864,502 - MPMX20_03668 0.80 -0.2 3,864,557 + MPMX20_03668 0.87 -0.6 3,864,579 - +0.2 3,864,699 + +0.5 3,864,793 - -3.1 3,864,821 - -0.9 3,864,821 - -0.0 3,864,821 - +3.6 3,864,901 + MPMX20_03669 0.17 +4.4 3,864,901 + MPMX20_03669 0.17 +0.2 3,864,908 - MPMX20_03669 0.18 +0.2 3,864,909 - MPMX20_03669 0.18 -1.3 3,865,020 - MPMX20_03669 0.28 -0.7 3,865,135 + MPMX20_03669 0.38 -1.1 3,865,178 - MPMX20_03669 0.42 +0.1 3,865,190 + MPMX20_03669 0.43 -1.1 3,865,319 + MPMX20_03669 0.55 +0.6 3,865,319 + MPMX20_03669 0.55 +0.8 3,865,332 - MPMX20_03669 0.56 +0.1 3,865,425 - MPMX20_03669 0.65 +0.7 3,865,430 - MPMX20_03669 0.65 -0.4 3,865,430 - MPMX20_03669 0.65 +1.9 3,865,442 - MPMX20_03669 0.66 -0.9 3,865,442 - MPMX20_03669 0.66 +1.0 3,865,620 + MPMX20_03669 0.82 -1.8
Or see this region's nucleotide sequence