Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03668

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03667 and MPMX20_03668 are separated by 112 nucleotidesMPMX20_03668 and MPMX20_03669 are separated by 57 nucleotides MPMX20_03667: MPMX20_03667 - L-serine dehydratase 2, at 3,862,419 to 3,863,786 _03667 MPMX20_03668: MPMX20_03668 - Flap endonuclease Xni, at 3,863,899 to 3,864,654 _03668 MPMX20_03669: MPMX20_03669 - Ribosomal RNA large subunit methyltransferase M, at 3,864,712 to 3,865,812 _03669 Position (kb) 3863 3864 3865Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3863.018 kb on - strand, within MPMX20_03667at 3863.040 kb on + strand, within MPMX20_03667at 3863.042 kb on + strand, within MPMX20_03667at 3863.050 kb on - strand, within MPMX20_03667at 3863.266 kb on - strand, within MPMX20_03667at 3863.273 kb on + strand, within MPMX20_03667at 3863.281 kb on - strand, within MPMX20_03667at 3863.304 kb on + strand, within MPMX20_03667at 3863.309 kb on + strand, within MPMX20_03667at 3863.494 kb on + strand, within MPMX20_03667at 3863.510 kb on + strand, within MPMX20_03667at 3863.510 kb on + strand, within MPMX20_03667at 3863.510 kb on + strand, within MPMX20_03667at 3863.510 kb on + strand, within MPMX20_03667at 3863.512 kb on + strand, within MPMX20_03667at 3863.518 kb on - strand, within MPMX20_03667at 3863.553 kb on - strand, within MPMX20_03667at 3863.558 kb on - strand, within MPMX20_03667at 3863.579 kb on + strand, within MPMX20_03667at 3863.627 kb on + strand, within MPMX20_03667at 3863.635 kb on - strand, within MPMX20_03667at 3863.654 kb on - strandat 3863.659 kb on + strandat 3863.725 kb on + strandat 3863.868 kb on - strandat 3863.935 kb on - strandat 3863.964 kb on - strandat 3863.964 kb on - strandat 3863.976 kb on + strand, within MPMX20_03668at 3864.057 kb on + strand, within MPMX20_03668at 3864.158 kb on + strand, within MPMX20_03668at 3864.158 kb on + strand, within MPMX20_03668at 3864.166 kb on - strand, within MPMX20_03668at 3864.166 kb on - strand, within MPMX20_03668at 3864.166 kb on - strand, within MPMX20_03668at 3864.166 kb on - strand, within MPMX20_03668at 3864.166 kb on - strand, within MPMX20_03668at 3864.166 kb on - strand, within MPMX20_03668at 3864.182 kb on + strand, within MPMX20_03668at 3864.188 kb on - strand, within MPMX20_03668at 3864.188 kb on - strand, within MPMX20_03668at 3864.188 kb on - strand, within MPMX20_03668at 3864.190 kb on - strand, within MPMX20_03668at 3864.198 kb on - strand, within MPMX20_03668at 3864.198 kb on - strand, within MPMX20_03668at 3864.341 kb on + strand, within MPMX20_03668at 3864.349 kb on - strand, within MPMX20_03668at 3864.369 kb on + strand, within MPMX20_03668at 3864.401 kb on + strand, within MPMX20_03668at 3864.409 kb on - strand, within MPMX20_03668at 3864.409 kb on - strand, within MPMX20_03668at 3864.433 kb on - strand, within MPMX20_03668at 3864.462 kb on + strand, within MPMX20_03668at 3864.462 kb on + strand, within MPMX20_03668at 3864.502 kb on - strand, within MPMX20_03668at 3864.557 kb on + strand, within MPMX20_03668at 3864.579 kb on - strandat 3864.699 kb on + strandat 3864.793 kb on - strandat 3864.821 kb on - strandat 3864.821 kb on - strandat 3864.821 kb on - strandat 3864.901 kb on + strand, within MPMX20_03669at 3864.901 kb on + strand, within MPMX20_03669at 3864.908 kb on - strand, within MPMX20_03669at 3864.909 kb on - strand, within MPMX20_03669at 3865.020 kb on - strand, within MPMX20_03669at 3865.135 kb on + strand, within MPMX20_03669at 3865.178 kb on - strand, within MPMX20_03669at 3865.190 kb on + strand, within MPMX20_03669at 3865.319 kb on + strand, within MPMX20_03669at 3865.319 kb on + strand, within MPMX20_03669at 3865.332 kb on - strand, within MPMX20_03669at 3865.425 kb on - strand, within MPMX20_03669at 3865.430 kb on - strand, within MPMX20_03669at 3865.430 kb on - strand, within MPMX20_03669at 3865.442 kb on - strand, within MPMX20_03669at 3865.442 kb on - strand, within MPMX20_03669at 3865.620 kb on + strand, within MPMX20_03669

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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3,863,018 - MPMX20_03667 0.44 -1.1
3,863,040 + MPMX20_03667 0.45 +0.7
3,863,042 + MPMX20_03667 0.46 -0.5
3,863,050 - MPMX20_03667 0.46 -0.0
3,863,266 - MPMX20_03667 0.62 +0.6
3,863,273 + MPMX20_03667 0.62 +1.0
3,863,281 - MPMX20_03667 0.63 -1.7
3,863,304 + MPMX20_03667 0.65 -0.0
3,863,309 + MPMX20_03667 0.65 +0.3
3,863,494 + MPMX20_03667 0.79 -0.1
3,863,510 + MPMX20_03667 0.80 +2.6
3,863,510 + MPMX20_03667 0.80 +1.3
3,863,510 + MPMX20_03667 0.80 -1.1
3,863,510 + MPMX20_03667 0.80 +0.4
3,863,512 + MPMX20_03667 0.80 -0.4
3,863,518 - MPMX20_03667 0.80 -2.1
3,863,553 - MPMX20_03667 0.83 -1.9
3,863,558 - MPMX20_03667 0.83 +0.6
3,863,579 + MPMX20_03667 0.85 -1.3
3,863,627 + MPMX20_03667 0.88 -0.3
3,863,635 - MPMX20_03667 0.89 +3.0
3,863,654 - -1.4
3,863,659 + -0.6
3,863,725 + -1.0
3,863,868 - +0.2
3,863,935 - +1.1
3,863,964 - -0.3
3,863,964 - -2.1
3,863,976 + MPMX20_03668 0.10 -2.1
3,864,057 + MPMX20_03668 0.21 -1.8
3,864,158 + MPMX20_03668 0.34 -0.0
3,864,158 + MPMX20_03668 0.34 +1.8
3,864,166 - MPMX20_03668 0.35 +1.2
3,864,166 - MPMX20_03668 0.35 -0.1
3,864,166 - MPMX20_03668 0.35 -0.7
3,864,166 - MPMX20_03668 0.35 +0.6
3,864,166 - MPMX20_03668 0.35 -0.9
3,864,166 - MPMX20_03668 0.35 +0.3
3,864,182 + MPMX20_03668 0.37 +0.6
3,864,188 - MPMX20_03668 0.38 +0.6
3,864,188 - MPMX20_03668 0.38 -1.2
3,864,188 - MPMX20_03668 0.38 -0.4
3,864,190 - MPMX20_03668 0.38 +0.6
3,864,198 - MPMX20_03668 0.40 +0.6
3,864,198 - MPMX20_03668 0.40 -0.0
3,864,341 + MPMX20_03668 0.58 -1.4
3,864,349 - MPMX20_03668 0.60 +3.6
3,864,369 + MPMX20_03668 0.62 +0.4
3,864,401 + MPMX20_03668 0.66 -0.2
3,864,409 - MPMX20_03668 0.67 -2.9
3,864,409 - MPMX20_03668 0.67 +0.9
3,864,433 - MPMX20_03668 0.71 -0.0
3,864,462 + MPMX20_03668 0.74 -1.3
3,864,462 + MPMX20_03668 0.74 +0.1
3,864,502 - MPMX20_03668 0.80 -0.2
3,864,557 + MPMX20_03668 0.87 -0.6
3,864,579 - +0.2
3,864,699 + +0.5
3,864,793 - -3.1
3,864,821 - -0.9
3,864,821 - -0.0
3,864,821 - +3.6
3,864,901 + MPMX20_03669 0.17 +4.4
3,864,901 + MPMX20_03669 0.17 +0.2
3,864,908 - MPMX20_03669 0.18 +0.2
3,864,909 - MPMX20_03669 0.18 -1.3
3,865,020 - MPMX20_03669 0.28 -0.7
3,865,135 + MPMX20_03669 0.38 -1.1
3,865,178 - MPMX20_03669 0.42 +0.1
3,865,190 + MPMX20_03669 0.43 -1.1
3,865,319 + MPMX20_03669 0.55 +0.6
3,865,319 + MPMX20_03669 0.55 +0.8
3,865,332 - MPMX20_03669 0.56 +0.1
3,865,425 - MPMX20_03669 0.65 +0.7
3,865,430 - MPMX20_03669 0.65 -0.4
3,865,430 - MPMX20_03669 0.65 +1.9
3,865,442 - MPMX20_03669 0.66 -0.9
3,865,442 - MPMX20_03669 0.66 +1.0
3,865,620 + MPMX20_03669 0.82 -1.8

Or see this region's nucleotide sequence