Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03640 and MPMX20_03641 are separated by 54 nucleotides MPMX20_03641 and MPMX20_03642 are separated by 15 nucleotides MPMX20_03642 and MPMX20_03643 overlap by 1 nucleotides
MPMX20_03640: MPMX20_03640 - hypothetical protein, at 3,827,638 to 3,828,681
_03640
MPMX20_03641: MPMX20_03641 - Phosphoadenosine phosphosulfate reductase, at 3,828,736 to 3,829,470
_03641
MPMX20_03642: MPMX20_03642 - Sulfite reductase [NADPH] hemoprotein beta-component, at 3,829,486 to 3,831,198
_03642
MPMX20_03643: MPMX20_03643 - Sulfite reductase [NADPH] flavoprotein alpha-component, at 3,831,198 to 3,833,003
_03643
Position (kb)
3829
3830
3831
3832 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3828.500 kb on + strand, within MPMX20_03640 at 3828.500 kb on + strand, within MPMX20_03640 at 3828.508 kb on - strand, within MPMX20_03640 at 3828.548 kb on + strand, within MPMX20_03640 at 3828.556 kb on - strand, within MPMX20_03640 at 3828.627 kb on + strand at 3828.676 kb on + strand at 3828.694 kb on + strand at 3828.702 kb on - strand at 3828.702 kb on - strand at 3828.702 kb on - strand at 3828.702 kb on - strand at 3828.712 kb on - strand at 3828.741 kb on - strand at 3828.819 kb on + strand, within MPMX20_03641 at 3828.850 kb on - strand, within MPMX20_03641 at 3828.850 kb on - strand, within MPMX20_03641 at 3828.902 kb on + strand, within MPMX20_03641 at 3828.903 kb on + strand, within MPMX20_03641 at 3828.903 kb on + strand, within MPMX20_03641 at 3828.910 kb on - strand, within MPMX20_03641 at 3828.911 kb on - strand, within MPMX20_03641 at 3828.935 kb on + strand, within MPMX20_03641 at 3828.957 kb on - strand, within MPMX20_03641 at 3828.983 kb on + strand, within MPMX20_03641 at 3829.000 kb on + strand, within MPMX20_03641 at 3829.013 kb on + strand, within MPMX20_03641 at 3829.013 kb on + strand, within MPMX20_03641 at 3829.021 kb on - strand, within MPMX20_03641 at 3829.021 kb on - strand, within MPMX20_03641 at 3829.021 kb on - strand, within MPMX20_03641 at 3829.041 kb on + strand, within MPMX20_03641 at 3829.074 kb on - strand, within MPMX20_03641 at 3829.100 kb on - strand, within MPMX20_03641 at 3829.142 kb on + strand, within MPMX20_03641 at 3829.152 kb on - strand, within MPMX20_03641 at 3829.165 kb on - strand, within MPMX20_03641 at 3829.170 kb on + strand, within MPMX20_03641 at 3829.172 kb on - strand, within MPMX20_03641 at 3829.176 kb on + strand, within MPMX20_03641 at 3829.184 kb on - strand, within MPMX20_03641 at 3829.214 kb on - strand, within MPMX20_03641 at 3829.315 kb on - strand, within MPMX20_03641 at 3829.518 kb on - strand at 3829.542 kb on + strand at 3829.542 kb on + strand at 3829.558 kb on + strand at 3829.558 kb on + strand at 3829.558 kb on + strand at 3829.559 kb on + strand at 3829.566 kb on - strand at 3829.578 kb on + strand at 3829.664 kb on - strand, within MPMX20_03642 at 3829.700 kb on - strand, within MPMX20_03642 at 3829.717 kb on - strand, within MPMX20_03642 at 3829.773 kb on - strand, within MPMX20_03642 at 3829.867 kb on - strand, within MPMX20_03642 at 3829.882 kb on + strand, within MPMX20_03642 at 3829.894 kb on + strand, within MPMX20_03642 at 3829.936 kb on + strand, within MPMX20_03642 at 3829.936 kb on + strand, within MPMX20_03642 at 3829.960 kb on - strand, within MPMX20_03642 at 3829.969 kb on - strand, within MPMX20_03642 at 3830.013 kb on + strand, within MPMX20_03642 at 3830.014 kb on - strand, within MPMX20_03642 at 3830.147 kb on + strand, within MPMX20_03642 at 3830.156 kb on - strand, within MPMX20_03642 at 3830.197 kb on + strand, within MPMX20_03642 at 3830.215 kb on - strand, within MPMX20_03642 at 3830.224 kb on + strand, within MPMX20_03642 at 3830.240 kb on - strand, within MPMX20_03642 at 3830.403 kb on - strand, within MPMX20_03642 at 3830.410 kb on - strand, within MPMX20_03642 at 3830.416 kb on - strand, within MPMX20_03642 at 3830.421 kb on - strand, within MPMX20_03642 at 3830.448 kb on + strand, within MPMX20_03642 at 3830.570 kb on - strand, within MPMX20_03642 at 3830.580 kb on + strand, within MPMX20_03642 at 3830.683 kb on + strand, within MPMX20_03642 at 3830.683 kb on + strand, within MPMX20_03642 at 3830.691 kb on - strand, within MPMX20_03642 at 3830.691 kb on - strand, within MPMX20_03642 at 3830.691 kb on - strand, within MPMX20_03642 at 3830.691 kb on - strand, within MPMX20_03642 at 3830.726 kb on - strand, within MPMX20_03642 at 3830.726 kb on - strand, within MPMX20_03642 at 3830.726 kb on - strand, within MPMX20_03642 at 3830.726 kb on - strand, within MPMX20_03642 at 3830.736 kb on + strand, within MPMX20_03642 at 3830.775 kb on + strand, within MPMX20_03642 at 3830.843 kb on + strand, within MPMX20_03642 at 3830.851 kb on - strand, within MPMX20_03642 at 3830.924 kb on - strand, within MPMX20_03642 at 3830.981 kb on - strand, within MPMX20_03642 at 3831.024 kb on + strand, within MPMX20_03642 at 3831.242 kb on - strand at 3831.316 kb on - strand at 3831.361 kb on + strand at 3831.378 kb on + strand at 3831.383 kb on + strand, within MPMX20_03643 at 3831.416 kb on - strand, within MPMX20_03643 at 3831.455 kb on - strand, within MPMX20_03643 at 3831.455 kb on - strand, within MPMX20_03643 at 3831.455 kb on - strand, within MPMX20_03643 at 3831.455 kb on - strand, within MPMX20_03643 at 3831.566 kb on + strand, within MPMX20_03643 at 3831.572 kb on - strand, within MPMX20_03643 at 3831.584 kb on + strand, within MPMX20_03643 at 3831.592 kb on - strand, within MPMX20_03643 at 3831.620 kb on + strand, within MPMX20_03643 at 3831.789 kb on + strand, within MPMX20_03643 at 3831.795 kb on - strand, within MPMX20_03643 at 3831.797 kb on - strand, within MPMX20_03643 at 3831.840 kb on - strand, within MPMX20_03643 at 3831.880 kb on + strand, within MPMX20_03643 at 3831.934 kb on + strand, within MPMX20_03643 at 3831.934 kb on + strand, within MPMX20_03643 at 3831.934 kb on + strand, within MPMX20_03643 at 3831.942 kb on - strand, within MPMX20_03643 at 3831.942 kb on - strand, within MPMX20_03643 at 3831.942 kb on - strand, within MPMX20_03643 at 3831.977 kb on + strand, within MPMX20_03643 at 3831.977 kb on + strand, within MPMX20_03643 at 3831.997 kb on - strand, within MPMX20_03643 at 3832.047 kb on + strand, within MPMX20_03643 at 3832.050 kb on + strand, within MPMX20_03643 at 3832.057 kb on + strand, within MPMX20_03643 at 3832.097 kb on + strand, within MPMX20_03643 at 3832.132 kb on + strand, within MPMX20_03643
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 3,828,500 + MPMX20_03640 0.83 +0.8 3,828,500 + MPMX20_03640 0.83 -1.5 3,828,508 - MPMX20_03640 0.83 -0.6 3,828,548 + MPMX20_03640 0.87 -1.3 3,828,556 - MPMX20_03640 0.88 +0.8 3,828,627 + +0.7 3,828,676 + +0.9 3,828,694 + -2.5 3,828,702 - +0.5 3,828,702 - -0.1 3,828,702 - -0.3 3,828,702 - -0.6 3,828,712 - -1.2 3,828,741 - -0.2 3,828,819 + MPMX20_03641 0.11 -1.3 3,828,850 - MPMX20_03641 0.16 -0.9 3,828,850 - MPMX20_03641 0.16 -0.6 3,828,902 + MPMX20_03641 0.23 -1.4 3,828,903 + MPMX20_03641 0.23 -0.0 3,828,903 + MPMX20_03641 0.23 -0.0 3,828,910 - MPMX20_03641 0.24 -3.7 3,828,911 - MPMX20_03641 0.24 -0.6 3,828,935 + MPMX20_03641 0.27 +0.5 3,828,957 - MPMX20_03641 0.30 -1.4 3,828,983 + MPMX20_03641 0.34 -2.5 3,829,000 + MPMX20_03641 0.36 -1.4 3,829,013 + MPMX20_03641 0.38 -1.0 3,829,013 + MPMX20_03641 0.38 -1.5 3,829,021 - MPMX20_03641 0.39 -2.1 3,829,021 - MPMX20_03641 0.39 +2.5 3,829,021 - MPMX20_03641 0.39 +0.5 3,829,041 + MPMX20_03641 0.41 -2.2 3,829,074 - MPMX20_03641 0.46 -0.9 3,829,100 - MPMX20_03641 0.50 +0.5 3,829,142 + MPMX20_03641 0.55 -2.0 3,829,152 - MPMX20_03641 0.57 -1.7 3,829,165 - MPMX20_03641 0.58 -0.0 3,829,170 + MPMX20_03641 0.59 -3.0 3,829,172 - MPMX20_03641 0.59 -2.6 3,829,176 + MPMX20_03641 0.60 -0.6 3,829,184 - MPMX20_03641 0.61 -0.8 3,829,214 - MPMX20_03641 0.65 -1.8 3,829,315 - MPMX20_03641 0.79 -1.5 3,829,518 - +0.4 3,829,542 + -3.2 3,829,542 + +0.5 3,829,558 + -0.1 3,829,558 + -1.4 3,829,558 + -2.7 3,829,559 + -1.9 3,829,566 - -2.0 3,829,578 + -2.4 3,829,664 - MPMX20_03642 0.10 -2.1 3,829,700 - MPMX20_03642 0.12 +0.5 3,829,717 - MPMX20_03642 0.13 -1.4 3,829,773 - MPMX20_03642 0.17 -0.9 3,829,867 - MPMX20_03642 0.22 -1.0 3,829,882 + MPMX20_03642 0.23 +0.6 3,829,894 + MPMX20_03642 0.24 -2.5 3,829,936 + MPMX20_03642 0.26 -1.4 3,829,936 + MPMX20_03642 0.26 +1.6 3,829,960 - MPMX20_03642 0.28 +1.6 3,829,969 - MPMX20_03642 0.28 -2.6 3,830,013 + MPMX20_03642 0.31 -0.3 3,830,014 - MPMX20_03642 0.31 -0.8 3,830,147 + MPMX20_03642 0.39 -2.4 3,830,156 - MPMX20_03642 0.39 -2.6 3,830,197 + MPMX20_03642 0.42 -1.7 3,830,215 - MPMX20_03642 0.43 +1.0 3,830,224 + MPMX20_03642 0.43 -0.4 3,830,240 - MPMX20_03642 0.44 -1.3 3,830,403 - MPMX20_03642 0.54 -1.0 3,830,410 - MPMX20_03642 0.54 -2.4 3,830,416 - MPMX20_03642 0.54 -1.9 3,830,421 - MPMX20_03642 0.55 -2.1 3,830,448 + MPMX20_03642 0.56 -0.3 3,830,570 - MPMX20_03642 0.63 -1.8 3,830,580 + MPMX20_03642 0.64 -1.4 3,830,683 + MPMX20_03642 0.70 -1.3 3,830,683 + MPMX20_03642 0.70 +3.6 3,830,691 - MPMX20_03642 0.70 -2.0 3,830,691 - MPMX20_03642 0.70 -1.7 3,830,691 - MPMX20_03642 0.70 -1.4 3,830,691 - MPMX20_03642 0.70 -3.4 3,830,726 - MPMX20_03642 0.72 +1.0 3,830,726 - MPMX20_03642 0.72 -0.7 3,830,726 - MPMX20_03642 0.72 -0.0 3,830,726 - MPMX20_03642 0.72 -2.0 3,830,736 + MPMX20_03642 0.73 -2.2 3,830,775 + MPMX20_03642 0.75 -1.8 3,830,843 + MPMX20_03642 0.79 +2.6 3,830,851 - MPMX20_03642 0.80 -0.8 3,830,924 - MPMX20_03642 0.84 -2.8 3,830,981 - MPMX20_03642 0.87 -1.6 3,831,024 + MPMX20_03642 0.90 +1.7 3,831,242 - -2.5 3,831,316 - -1.6 3,831,361 + -1.1 3,831,378 + +0.7 3,831,383 + MPMX20_03643 0.10 -1.7 3,831,416 - MPMX20_03643 0.12 -2.5 3,831,455 - MPMX20_03643 0.14 -2.0 3,831,455 - MPMX20_03643 0.14 -2.5 3,831,455 - MPMX20_03643 0.14 -1.9 3,831,455 - MPMX20_03643 0.14 -0.6 3,831,566 + MPMX20_03643 0.20 -3.0 3,831,572 - MPMX20_03643 0.21 -1.8 3,831,584 + MPMX20_03643 0.21 -0.8 3,831,592 - MPMX20_03643 0.22 -2.4 3,831,620 + MPMX20_03643 0.23 -0.3 3,831,789 + MPMX20_03643 0.33 -0.5 3,831,795 - MPMX20_03643 0.33 -2.4 3,831,797 - MPMX20_03643 0.33 +0.8 3,831,840 - MPMX20_03643 0.36 -1.3 3,831,880 + MPMX20_03643 0.38 -0.4 3,831,934 + MPMX20_03643 0.41 -0.7 3,831,934 + MPMX20_03643 0.41 -0.6 3,831,934 + MPMX20_03643 0.41 -0.3 3,831,942 - MPMX20_03643 0.41 -2.0 3,831,942 - MPMX20_03643 0.41 +0.6 3,831,942 - MPMX20_03643 0.41 -2.9 3,831,977 + MPMX20_03643 0.43 -1.4 3,831,977 + MPMX20_03643 0.43 -0.0 3,831,997 - MPMX20_03643 0.44 -0.6 3,832,047 + MPMX20_03643 0.47 -0.4 3,832,050 + MPMX20_03643 0.47 -0.9 3,832,057 + MPMX20_03643 0.48 -2.5 3,832,097 + MPMX20_03643 0.50 -1.3 3,832,132 + MPMX20_03643 0.52 -2.9
Or see this region's nucleotide sequence