Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03486

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03484 and MPMX20_03485 are separated by 22 nucleotidesMPMX20_03485 and MPMX20_03486 are separated by 85 nucleotidesMPMX20_03486 and MPMX20_03487 are separated by 138 nucleotidesMPMX20_03487 and MPMX20_03488 are separated by 99 nucleotidesMPMX20_03488 and MPMX20_03489 overlap by 11 nucleotides MPMX20_03484: MPMX20_03484 - hypothetical protein, at 3,673,212 to 3,673,319 _03484 MPMX20_03485: MPMX20_03485 - NAD kinase, at 3,673,342 to 3,674,220 _03485 MPMX20_03486: MPMX20_03486 - DNA repair protein RecN, at 3,674,306 to 3,675,967 _03486 MPMX20_03487: MPMX20_03487 - Outer membrane protein assembly factor BamE, at 3,676,106 to 3,676,444 _03487 MPMX20_03488: MPMX20_03488 - Persistence and stress-resistance antitoxin PasI, at 3,676,544 to 3,676,831 _03488 MPMX20_03489: MPMX20_03489 - Persistence and stress-resistance toxin PasT, at 3,676,821 to 3,677,297 _03489 Position (kb) 3674 3675 3676Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3673.308 kb on + strand, within MPMX20_03484at 3674.470 kb on + strandat 3674.476 kb on - strand, within MPMX20_03486at 3674.525 kb on - strand, within MPMX20_03486at 3674.541 kb on + strand, within MPMX20_03486at 3674.565 kb on - strand, within MPMX20_03486at 3674.774 kb on - strand, within MPMX20_03486at 3674.804 kb on + strand, within MPMX20_03486at 3674.804 kb on + strand, within MPMX20_03486at 3674.814 kb on + strand, within MPMX20_03486at 3674.851 kb on - strand, within MPMX20_03486at 3674.942 kb on + strand, within MPMX20_03486at 3674.950 kb on - strand, within MPMX20_03486at 3674.964 kb on - strand, within MPMX20_03486at 3674.964 kb on - strand, within MPMX20_03486at 3674.975 kb on + strand, within MPMX20_03486at 3674.979 kb on + strand, within MPMX20_03486at 3674.982 kb on - strand, within MPMX20_03486at 3675.015 kb on + strand, within MPMX20_03486at 3675.037 kb on - strand, within MPMX20_03486at 3675.051 kb on - strand, within MPMX20_03486at 3675.063 kb on + strand, within MPMX20_03486at 3675.071 kb on - strand, within MPMX20_03486at 3675.255 kb on - strand, within MPMX20_03486at 3675.286 kb on + strand, within MPMX20_03486at 3675.286 kb on + strand, within MPMX20_03486at 3675.294 kb on - strand, within MPMX20_03486at 3675.322 kb on + strand, within MPMX20_03486at 3675.339 kb on - strand, within MPMX20_03486at 3675.420 kb on - strand, within MPMX20_03486at 3675.436 kb on + strand, within MPMX20_03486at 3675.436 kb on + strand, within MPMX20_03486at 3675.528 kb on + strand, within MPMX20_03486at 3675.528 kb on + strand, within MPMX20_03486at 3675.575 kb on + strand, within MPMX20_03486at 3675.585 kb on + strand, within MPMX20_03486at 3675.645 kb on - strand, within MPMX20_03486at 3675.697 kb on + strand, within MPMX20_03486at 3675.731 kb on + strand, within MPMX20_03486at 3675.739 kb on - strand, within MPMX20_03486at 3675.750 kb on + strand, within MPMX20_03486at 3675.760 kb on + strand, within MPMX20_03486at 3675.768 kb on - strand, within MPMX20_03486at 3675.768 kb on - strand, within MPMX20_03486at 3675.803 kb on + strandat 3675.876 kb on - strandat 3675.961 kb on - strandat 3675.993 kb on - strandat 3675.998 kb on - strandat 3676.085 kb on - strandat 3676.162 kb on + strand, within MPMX20_03487at 3676.164 kb on + strand, within MPMX20_03487at 3676.170 kb on - strand, within MPMX20_03487at 3676.215 kb on + strand, within MPMX20_03487at 3676.215 kb on + strand, within MPMX20_03487at 3676.215 kb on + strand, within MPMX20_03487at 3676.223 kb on - strand, within MPMX20_03487at 3676.223 kb on - strand, within MPMX20_03487at 3676.223 kb on - strand, within MPMX20_03487at 3676.223 kb on - strand, within MPMX20_03487at 3676.264 kb on - strand, within MPMX20_03487at 3676.265 kb on - strand, within MPMX20_03487at 3676.265 kb on - strand, within MPMX20_03487at 3676.280 kb on - strand, within MPMX20_03487at 3676.304 kb on - strand, within MPMX20_03487at 3676.362 kb on + strand, within MPMX20_03487at 3676.382 kb on - strand, within MPMX20_03487at 3676.406 kb on - strand, within MPMX20_03487at 3676.425 kb on + strandat 3676.433 kb on - strandat 3676.503 kb on + strandat 3676.524 kb on + strandat 3676.524 kb on + strandat 3676.524 kb on + strandat 3676.524 kb on + strandat 3676.524 kb on + strandat 3676.524 kb on + strandat 3676.532 kb on - strandat 3676.532 kb on - strandat 3676.532 kb on - strandat 3676.532 kb on - strandat 3676.532 kb on - strandat 3676.532 kb on - strandat 3676.532 kb on - strandat 3676.532 kb on - strandat 3676.532 kb on - strandat 3676.539 kb on - strandat 3676.708 kb on + strand, within MPMX20_03488at 3676.708 kb on + strand, within MPMX20_03488at 3676.716 kb on - strand, within MPMX20_03488at 3676.716 kb on - strand, within MPMX20_03488at 3676.716 kb on - strand, within MPMX20_03488at 3676.716 kb on - strand, within MPMX20_03488at 3676.770 kb on - strand, within MPMX20_03488at 3676.839 kb on - strandat 3676.839 kb on - strandat 3676.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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3,673,308 + MPMX20_03484 0.89 +0.3
3,674,470 + -2.1
3,674,476 - MPMX20_03486 0.10 -1.6
3,674,525 - MPMX20_03486 0.13 +0.3
3,674,541 + MPMX20_03486 0.14 -0.2
3,674,565 - MPMX20_03486 0.16 +0.2
3,674,774 - MPMX20_03486 0.28 -1.3
3,674,804 + MPMX20_03486 0.30 +1.9
3,674,804 + MPMX20_03486 0.30 -0.9
3,674,814 + MPMX20_03486 0.31 -1.2
3,674,851 - MPMX20_03486 0.33 +0.9
3,674,942 + MPMX20_03486 0.38 +0.1
3,674,950 - MPMX20_03486 0.39 -0.7
3,674,964 - MPMX20_03486 0.40 -0.7
3,674,964 - MPMX20_03486 0.40 +0.7
3,674,975 + MPMX20_03486 0.40 +0.9
3,674,979 + MPMX20_03486 0.40 -1.6
3,674,982 - MPMX20_03486 0.41 +1.5
3,675,015 + MPMX20_03486 0.43 +1.0
3,675,037 - MPMX20_03486 0.44 +1.5
3,675,051 - MPMX20_03486 0.45 +0.1
3,675,063 + MPMX20_03486 0.46 +0.3
3,675,071 - MPMX20_03486 0.46 -1.8
3,675,255 - MPMX20_03486 0.57 +0.4
3,675,286 + MPMX20_03486 0.59 -0.8
3,675,286 + MPMX20_03486 0.59 -0.7
3,675,294 - MPMX20_03486 0.59 +1.0
3,675,322 + MPMX20_03486 0.61 +1.4
3,675,339 - MPMX20_03486 0.62 -0.2
3,675,420 - MPMX20_03486 0.67 -1.9
3,675,436 + MPMX20_03486 0.68 +4.1
3,675,436 + MPMX20_03486 0.68 -2.4
3,675,528 + MPMX20_03486 0.74 +0.8
3,675,528 + MPMX20_03486 0.74 +0.5
3,675,575 + MPMX20_03486 0.76 -2.3
3,675,585 + MPMX20_03486 0.77 +0.1
3,675,645 - MPMX20_03486 0.81 +1.5
3,675,697 + MPMX20_03486 0.84 -0.6
3,675,731 + MPMX20_03486 0.86 -0.1
3,675,739 - MPMX20_03486 0.86 -2.3
3,675,750 + MPMX20_03486 0.87 +0.1
3,675,760 + MPMX20_03486 0.87 -0.3
3,675,768 - MPMX20_03486 0.88 +0.9
3,675,768 - MPMX20_03486 0.88 -0.5
3,675,803 + -2.1
3,675,876 - +0.5
3,675,961 - +0.9
3,675,993 - -0.5
3,675,998 - -0.1
3,676,085 - +0.1
3,676,162 + MPMX20_03487 0.17 +1.9
3,676,164 + MPMX20_03487 0.17 +0.6
3,676,170 - MPMX20_03487 0.19 -2.3
3,676,215 + MPMX20_03487 0.32 +1.0
3,676,215 + MPMX20_03487 0.32 +0.1
3,676,215 + MPMX20_03487 0.32 +2.3
3,676,223 - MPMX20_03487 0.35 +0.4
3,676,223 - MPMX20_03487 0.35 +0.6
3,676,223 - MPMX20_03487 0.35 -0.1
3,676,223 - MPMX20_03487 0.35 +0.3
3,676,264 - MPMX20_03487 0.47 +0.8
3,676,265 - MPMX20_03487 0.47 +1.0
3,676,265 - MPMX20_03487 0.47 -1.0
3,676,280 - MPMX20_03487 0.51 -0.7
3,676,304 - MPMX20_03487 0.58 -0.1
3,676,362 + MPMX20_03487 0.76 +3.2
3,676,382 - MPMX20_03487 0.81 +0.3
3,676,406 - MPMX20_03487 0.88 +0.1
3,676,425 + +2.5
3,676,433 - -1.3
3,676,503 + -2.2
3,676,524 + -1.7
3,676,524 + -0.1
3,676,524 + +0.6
3,676,524 + -2.0
3,676,524 + +0.2
3,676,524 + -2.3
3,676,532 - +0.5
3,676,532 - -0.5
3,676,532 - -2.0
3,676,532 - +2.5
3,676,532 - -1.4
3,676,532 - -0.2
3,676,532 - -1.5
3,676,532 - +0.0
3,676,532 - -0.4
3,676,539 - +2.5
3,676,708 + MPMX20_03488 0.57 +0.9
3,676,708 + MPMX20_03488 0.57 +0.6
3,676,716 - MPMX20_03488 0.60 +1.5
3,676,716 - MPMX20_03488 0.60 +1.6
3,676,716 - MPMX20_03488 0.60 -1.7
3,676,716 - MPMX20_03488 0.60 -1.3
3,676,770 - MPMX20_03488 0.78 +0.5
3,676,839 - -1.7
3,676,839 - -0.7
3,676,839 - -0.5

Or see this region's nucleotide sequence