Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03484 and MPMX20_03485 are separated by 22 nucleotides MPMX20_03485 and MPMX20_03486 are separated by 85 nucleotides MPMX20_03486 and MPMX20_03487 are separated by 138 nucleotides MPMX20_03487 and MPMX20_03488 are separated by 99 nucleotides MPMX20_03488 and MPMX20_03489 overlap by 11 nucleotides
MPMX20_03484: MPMX20_03484 - hypothetical protein, at 3,673,212 to 3,673,319
_03484
MPMX20_03485: MPMX20_03485 - NAD kinase, at 3,673,342 to 3,674,220
_03485
MPMX20_03486: MPMX20_03486 - DNA repair protein RecN, at 3,674,306 to 3,675,967
_03486
MPMX20_03487: MPMX20_03487 - Outer membrane protein assembly factor BamE, at 3,676,106 to 3,676,444
_03487
MPMX20_03488: MPMX20_03488 - Persistence and stress-resistance antitoxin PasI, at 3,676,544 to 3,676,831
_03488
MPMX20_03489: MPMX20_03489 - Persistence and stress-resistance toxin PasT, at 3,676,821 to 3,677,297
_03489
Position (kb)
3674
3675
3676 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3673.308 kb on + strand, within MPMX20_03484 at 3674.470 kb on + strand at 3674.476 kb on - strand, within MPMX20_03486 at 3674.525 kb on - strand, within MPMX20_03486 at 3674.541 kb on + strand, within MPMX20_03486 at 3674.565 kb on - strand, within MPMX20_03486 at 3674.774 kb on - strand, within MPMX20_03486 at 3674.804 kb on + strand, within MPMX20_03486 at 3674.804 kb on + strand, within MPMX20_03486 at 3674.814 kb on + strand, within MPMX20_03486 at 3674.851 kb on - strand, within MPMX20_03486 at 3674.942 kb on + strand, within MPMX20_03486 at 3674.950 kb on - strand, within MPMX20_03486 at 3674.964 kb on - strand, within MPMX20_03486 at 3674.964 kb on - strand, within MPMX20_03486 at 3674.975 kb on + strand, within MPMX20_03486 at 3674.979 kb on + strand, within MPMX20_03486 at 3674.982 kb on - strand, within MPMX20_03486 at 3675.015 kb on + strand, within MPMX20_03486 at 3675.037 kb on - strand, within MPMX20_03486 at 3675.051 kb on - strand, within MPMX20_03486 at 3675.063 kb on + strand, within MPMX20_03486 at 3675.071 kb on - strand, within MPMX20_03486 at 3675.255 kb on - strand, within MPMX20_03486 at 3675.286 kb on + strand, within MPMX20_03486 at 3675.286 kb on + strand, within MPMX20_03486 at 3675.294 kb on - strand, within MPMX20_03486 at 3675.322 kb on + strand, within MPMX20_03486 at 3675.339 kb on - strand, within MPMX20_03486 at 3675.420 kb on - strand, within MPMX20_03486 at 3675.436 kb on + strand, within MPMX20_03486 at 3675.436 kb on + strand, within MPMX20_03486 at 3675.528 kb on + strand, within MPMX20_03486 at 3675.528 kb on + strand, within MPMX20_03486 at 3675.575 kb on + strand, within MPMX20_03486 at 3675.585 kb on + strand, within MPMX20_03486 at 3675.645 kb on - strand, within MPMX20_03486 at 3675.697 kb on + strand, within MPMX20_03486 at 3675.731 kb on + strand, within MPMX20_03486 at 3675.739 kb on - strand, within MPMX20_03486 at 3675.750 kb on + strand, within MPMX20_03486 at 3675.760 kb on + strand, within MPMX20_03486 at 3675.768 kb on - strand, within MPMX20_03486 at 3675.768 kb on - strand, within MPMX20_03486 at 3675.803 kb on + strand at 3675.876 kb on - strand at 3675.961 kb on - strand at 3675.993 kb on - strand at 3675.998 kb on - strand at 3676.085 kb on - strand at 3676.162 kb on + strand, within MPMX20_03487 at 3676.164 kb on + strand, within MPMX20_03487 at 3676.170 kb on - strand, within MPMX20_03487 at 3676.215 kb on + strand, within MPMX20_03487 at 3676.215 kb on + strand, within MPMX20_03487 at 3676.215 kb on + strand, within MPMX20_03487 at 3676.223 kb on - strand, within MPMX20_03487 at 3676.223 kb on - strand, within MPMX20_03487 at 3676.223 kb on - strand, within MPMX20_03487 at 3676.223 kb on - strand, within MPMX20_03487 at 3676.264 kb on - strand, within MPMX20_03487 at 3676.265 kb on - strand, within MPMX20_03487 at 3676.265 kb on - strand, within MPMX20_03487 at 3676.280 kb on - strand, within MPMX20_03487 at 3676.304 kb on - strand, within MPMX20_03487 at 3676.362 kb on + strand, within MPMX20_03487 at 3676.382 kb on - strand, within MPMX20_03487 at 3676.406 kb on - strand, within MPMX20_03487 at 3676.425 kb on + strand at 3676.433 kb on - strand at 3676.503 kb on + strand at 3676.524 kb on + strand at 3676.524 kb on + strand at 3676.524 kb on + strand at 3676.524 kb on + strand at 3676.524 kb on + strand at 3676.524 kb on + strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.539 kb on - strand at 3676.708 kb on + strand, within MPMX20_03488 at 3676.708 kb on + strand, within MPMX20_03488 at 3676.716 kb on - strand, within MPMX20_03488 at 3676.716 kb on - strand, within MPMX20_03488 at 3676.716 kb on - strand, within MPMX20_03488 at 3676.716 kb on - strand, within MPMX20_03488 at 3676.770 kb on - strand, within MPMX20_03488 at 3676.839 kb on - strand at 3676.839 kb on - strand at 3676.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 3,673,308 + MPMX20_03484 0.89 +0.3 3,674,470 + -2.1 3,674,476 - MPMX20_03486 0.10 -1.6 3,674,525 - MPMX20_03486 0.13 +0.3 3,674,541 + MPMX20_03486 0.14 -0.2 3,674,565 - MPMX20_03486 0.16 +0.2 3,674,774 - MPMX20_03486 0.28 -1.3 3,674,804 + MPMX20_03486 0.30 +1.9 3,674,804 + MPMX20_03486 0.30 -0.9 3,674,814 + MPMX20_03486 0.31 -1.2 3,674,851 - MPMX20_03486 0.33 +0.9 3,674,942 + MPMX20_03486 0.38 +0.1 3,674,950 - MPMX20_03486 0.39 -0.7 3,674,964 - MPMX20_03486 0.40 -0.7 3,674,964 - MPMX20_03486 0.40 +0.7 3,674,975 + MPMX20_03486 0.40 +0.9 3,674,979 + MPMX20_03486 0.40 -1.6 3,674,982 - MPMX20_03486 0.41 +1.5 3,675,015 + MPMX20_03486 0.43 +1.0 3,675,037 - MPMX20_03486 0.44 +1.5 3,675,051 - MPMX20_03486 0.45 +0.1 3,675,063 + MPMX20_03486 0.46 +0.3 3,675,071 - MPMX20_03486 0.46 -1.8 3,675,255 - MPMX20_03486 0.57 +0.4 3,675,286 + MPMX20_03486 0.59 -0.8 3,675,286 + MPMX20_03486 0.59 -0.7 3,675,294 - MPMX20_03486 0.59 +1.0 3,675,322 + MPMX20_03486 0.61 +1.4 3,675,339 - MPMX20_03486 0.62 -0.2 3,675,420 - MPMX20_03486 0.67 -1.9 3,675,436 + MPMX20_03486 0.68 +4.1 3,675,436 + MPMX20_03486 0.68 -2.4 3,675,528 + MPMX20_03486 0.74 +0.8 3,675,528 + MPMX20_03486 0.74 +0.5 3,675,575 + MPMX20_03486 0.76 -2.3 3,675,585 + MPMX20_03486 0.77 +0.1 3,675,645 - MPMX20_03486 0.81 +1.5 3,675,697 + MPMX20_03486 0.84 -0.6 3,675,731 + MPMX20_03486 0.86 -0.1 3,675,739 - MPMX20_03486 0.86 -2.3 3,675,750 + MPMX20_03486 0.87 +0.1 3,675,760 + MPMX20_03486 0.87 -0.3 3,675,768 - MPMX20_03486 0.88 +0.9 3,675,768 - MPMX20_03486 0.88 -0.5 3,675,803 + -2.1 3,675,876 - +0.5 3,675,961 - +0.9 3,675,993 - -0.5 3,675,998 - -0.1 3,676,085 - +0.1 3,676,162 + MPMX20_03487 0.17 +1.9 3,676,164 + MPMX20_03487 0.17 +0.6 3,676,170 - MPMX20_03487 0.19 -2.3 3,676,215 + MPMX20_03487 0.32 +1.0 3,676,215 + MPMX20_03487 0.32 +0.1 3,676,215 + MPMX20_03487 0.32 +2.3 3,676,223 - MPMX20_03487 0.35 +0.4 3,676,223 - MPMX20_03487 0.35 +0.6 3,676,223 - MPMX20_03487 0.35 -0.1 3,676,223 - MPMX20_03487 0.35 +0.3 3,676,264 - MPMX20_03487 0.47 +0.8 3,676,265 - MPMX20_03487 0.47 +1.0 3,676,265 - MPMX20_03487 0.47 -1.0 3,676,280 - MPMX20_03487 0.51 -0.7 3,676,304 - MPMX20_03487 0.58 -0.1 3,676,362 + MPMX20_03487 0.76 +3.2 3,676,382 - MPMX20_03487 0.81 +0.3 3,676,406 - MPMX20_03487 0.88 +0.1 3,676,425 + +2.5 3,676,433 - -1.3 3,676,503 + -2.2 3,676,524 + -1.7 3,676,524 + -0.1 3,676,524 + +0.6 3,676,524 + -2.0 3,676,524 + +0.2 3,676,524 + -2.3 3,676,532 - +0.5 3,676,532 - -0.5 3,676,532 - -2.0 3,676,532 - +2.5 3,676,532 - -1.4 3,676,532 - -0.2 3,676,532 - -1.5 3,676,532 - +0.0 3,676,532 - -0.4 3,676,539 - +2.5 3,676,708 + MPMX20_03488 0.57 +0.9 3,676,708 + MPMX20_03488 0.57 +0.6 3,676,716 - MPMX20_03488 0.60 +1.5 3,676,716 - MPMX20_03488 0.60 +1.6 3,676,716 - MPMX20_03488 0.60 -1.7 3,676,716 - MPMX20_03488 0.60 -1.3 3,676,770 - MPMX20_03488 0.78 +0.5 3,676,839 - -1.7 3,676,839 - -0.7 3,676,839 - -0.5
Or see this region's nucleotide sequence