Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03444 and MPMX20_03445 are separated by 424 nucleotides MPMX20_03445 and MPMX20_03446 overlap by 16 nucleotides MPMX20_03446 and MPMX20_03447 are separated by 132 nucleotides
MPMX20_03444: MPMX20_03444 - ECF RNA polymerase sigma-E factor, at 3,631,134 to 3,631,709
_03444
MPMX20_03445: MPMX20_03445 - L-aspartate oxidase, at 3,632,134 to 3,633,753
_03445
MPMX20_03446: MPMX20_03446 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 3,633,738 to 3,634,475
_03446
MPMX20_03447: MPMX20_03447 - ATP-dependent RNA helicase SrmB, at 3,634,608 to 3,635,936
_03447
Position (kb)
3632
3633
3634 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3631.799 kb on - strand at 3631.881 kb on - strand at 3631.881 kb on - strand at 3631.940 kb on + strand at 3631.940 kb on + strand at 3631.948 kb on - strand at 3631.958 kb on - strand at 3632.017 kb on + strand at 3632.026 kb on - strand at 3632.026 kb on - strand at 3632.027 kb on - strand at 3632.147 kb on - strand at 3632.149 kb on + strand at 3632.162 kb on - strand at 3632.167 kb on - strand at 3632.198 kb on + strand at 3632.198 kb on + strand at 3632.221 kb on + strand at 3632.264 kb on + strand at 3632.318 kb on + strand, within MPMX20_03445 at 3632.436 kb on - strand, within MPMX20_03445 at 3632.460 kb on + strand, within MPMX20_03445 at 3632.482 kb on + strand, within MPMX20_03445 at 3632.515 kb on - strand, within MPMX20_03445 at 3632.521 kb on - strand, within MPMX20_03445 at 3632.551 kb on + strand, within MPMX20_03445 at 3632.565 kb on + strand, within MPMX20_03445 at 3632.575 kb on + strand, within MPMX20_03445 at 3632.575 kb on + strand, within MPMX20_03445 at 3632.578 kb on - strand, within MPMX20_03445 at 3632.583 kb on - strand, within MPMX20_03445 at 3632.721 kb on + strand, within MPMX20_03445 at 3632.743 kb on + strand, within MPMX20_03445 at 3632.777 kb on - strand, within MPMX20_03445 at 3632.777 kb on - strand, within MPMX20_03445 at 3632.781 kb on + strand, within MPMX20_03445 at 3632.817 kb on - strand, within MPMX20_03445 at 3632.947 kb on + strand, within MPMX20_03445 at 3633.082 kb on - strand, within MPMX20_03445 at 3633.184 kb on + strand, within MPMX20_03445 at 3633.192 kb on - strand, within MPMX20_03445 at 3633.192 kb on - strand, within MPMX20_03445 at 3633.227 kb on - strand, within MPMX20_03445 at 3633.261 kb on + strand, within MPMX20_03445 at 3633.351 kb on - strand, within MPMX20_03445 at 3633.364 kb on + strand, within MPMX20_03445 at 3633.372 kb on - strand, within MPMX20_03445 at 3633.372 kb on - strand, within MPMX20_03445 at 3633.408 kb on - strand, within MPMX20_03445 at 3633.408 kb on - strand, within MPMX20_03445 at 3633.660 kb on + strand at 3633.684 kb on + strand at 3633.728 kb on + strand at 3633.749 kb on + strand at 3633.762 kb on + strand at 3633.762 kb on + strand at 3633.762 kb on + strand at 3633.762 kb on + strand at 3633.770 kb on - strand at 3633.770 kb on - strand at 3633.770 kb on - strand at 3633.770 kb on - strand at 3633.789 kb on + strand at 3633.792 kb on - strand at 3633.797 kb on - strand at 3633.802 kb on - strand at 3633.821 kb on + strand, within MPMX20_03446 at 3633.898 kb on - strand, within MPMX20_03446 at 3634.017 kb on + strand, within MPMX20_03446 at 3634.020 kb on - strand, within MPMX20_03446 at 3634.025 kb on - strand, within MPMX20_03446 at 3634.025 kb on - strand, within MPMX20_03446 at 3634.025 kb on - strand, within MPMX20_03446 at 3634.036 kb on - strand, within MPMX20_03446 at 3634.061 kb on + strand, within MPMX20_03446 at 3634.067 kb on + strand, within MPMX20_03446 at 3634.163 kb on + strand, within MPMX20_03446 at 3634.163 kb on + strand, within MPMX20_03446 at 3634.171 kb on - strand, within MPMX20_03446 at 3634.171 kb on - strand, within MPMX20_03446 at 3634.177 kb on + strand, within MPMX20_03446 at 3634.185 kb on - strand, within MPMX20_03446 at 3634.301 kb on - strand, within MPMX20_03446 at 3634.345 kb on - strand, within MPMX20_03446 at 3634.412 kb on - strand at 3634.475 kb on + strand at 3634.483 kb on - strand at 3634.508 kb on + strand at 3634.508 kb on + strand at 3634.508 kb on + strand at 3634.508 kb on + strand at 3634.513 kb on + strand at 3634.516 kb on - strand at 3634.516 kb on - strand at 3634.560 kb on + strand at 3634.567 kb on + strand at 3634.593 kb on + strand at 3634.607 kb on - strand at 3634.650 kb on - strand at 3634.728 kb on - strand at 3634.737 kb on + strand at 3634.744 kb on + strand, within MPMX20_03447 at 3634.744 kb on + strand, within MPMX20_03447
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 3,631,799 - -0.9 3,631,881 - +1.5 3,631,881 - +0.2 3,631,940 + -1.0 3,631,940 + -0.0 3,631,948 - -0.5 3,631,958 - -0.6 3,632,017 + -1.4 3,632,026 - +1.0 3,632,026 - +3.1 3,632,027 - -0.0 3,632,147 - +0.8 3,632,149 + -1.5 3,632,162 - -1.2 3,632,167 - -1.0 3,632,198 + +1.3 3,632,198 + -0.7 3,632,221 + +0.1 3,632,264 + -2.6 3,632,318 + MPMX20_03445 0.11 +1.5 3,632,436 - MPMX20_03445 0.19 -2.5 3,632,460 + MPMX20_03445 0.20 -2.9 3,632,482 + MPMX20_03445 0.21 -0.0 3,632,515 - MPMX20_03445 0.24 -1.2 3,632,521 - MPMX20_03445 0.24 -0.0 3,632,551 + MPMX20_03445 0.26 +0.1 3,632,565 + MPMX20_03445 0.27 -1.8 3,632,575 + MPMX20_03445 0.27 -2.8 3,632,575 + MPMX20_03445 0.27 -1.8 3,632,578 - MPMX20_03445 0.27 -2.0 3,632,583 - MPMX20_03445 0.28 -2.7 3,632,721 + MPMX20_03445 0.36 +0.5 3,632,743 + MPMX20_03445 0.38 -2.2 3,632,777 - MPMX20_03445 0.40 -1.1 3,632,777 - MPMX20_03445 0.40 -0.5 3,632,781 + MPMX20_03445 0.40 -0.5 3,632,817 - MPMX20_03445 0.42 -1.2 3,632,947 + MPMX20_03445 0.50 -1.8 3,633,082 - MPMX20_03445 0.59 -1.3 3,633,184 + MPMX20_03445 0.65 -2.7 3,633,192 - MPMX20_03445 0.65 -1.2 3,633,192 - MPMX20_03445 0.65 -0.9 3,633,227 - MPMX20_03445 0.67 -2.0 3,633,261 + MPMX20_03445 0.70 -2.0 3,633,351 - MPMX20_03445 0.75 +0.2 3,633,364 + MPMX20_03445 0.76 -2.7 3,633,372 - MPMX20_03445 0.76 -1.2 3,633,372 - MPMX20_03445 0.76 -0.6 3,633,408 - MPMX20_03445 0.79 -2.8 3,633,408 - MPMX20_03445 0.79 -0.4 3,633,660 + -0.3 3,633,684 + -1.7 3,633,728 + +0.5 3,633,749 + +1.2 3,633,762 + -2.7 3,633,762 + -0.4 3,633,762 + +1.0 3,633,762 + -0.5 3,633,770 - +0.2 3,633,770 - +0.9 3,633,770 - +0.4 3,633,770 - +0.2 3,633,789 + +1.1 3,633,792 - -0.2 3,633,797 - -2.2 3,633,802 - -2.0 3,633,821 + MPMX20_03446 0.11 +1.0 3,633,898 - MPMX20_03446 0.22 +0.1 3,634,017 + MPMX20_03446 0.38 +0.5 3,634,020 - MPMX20_03446 0.38 -0.0 3,634,025 - MPMX20_03446 0.39 -0.2 3,634,025 - MPMX20_03446 0.39 +1.0 3,634,025 - MPMX20_03446 0.39 -2.8 3,634,036 - MPMX20_03446 0.40 +0.1 3,634,061 + MPMX20_03446 0.44 -0.7 3,634,067 + MPMX20_03446 0.45 -0.1 3,634,163 + MPMX20_03446 0.58 +0.7 3,634,163 + MPMX20_03446 0.58 +2.5 3,634,171 - MPMX20_03446 0.59 +0.2 3,634,171 - MPMX20_03446 0.59 -1.2 3,634,177 + MPMX20_03446 0.59 -0.5 3,634,185 - MPMX20_03446 0.61 +0.6 3,634,301 - MPMX20_03446 0.76 -1.4 3,634,345 - MPMX20_03446 0.82 -0.2 3,634,412 - +0.2 3,634,475 + -0.8 3,634,483 - +1.8 3,634,508 + -2.3 3,634,508 + -0.3 3,634,508 + -0.3 3,634,508 + +2.9 3,634,513 + +1.1 3,634,516 - +2.8 3,634,516 - -0.8 3,634,560 + -1.4 3,634,567 + +1.5 3,634,593 + -0.8 3,634,607 - +1.0 3,634,650 - -0.5 3,634,728 - -0.3 3,634,737 + -0.3 3,634,744 + MPMX20_03447 0.10 -2.0 3,634,744 + MPMX20_03447 0.10 -0.9
Or see this region's nucleotide sequence