Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03445

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03444 and MPMX20_03445 are separated by 424 nucleotidesMPMX20_03445 and MPMX20_03446 overlap by 16 nucleotidesMPMX20_03446 and MPMX20_03447 are separated by 132 nucleotides MPMX20_03444: MPMX20_03444 - ECF RNA polymerase sigma-E factor, at 3,631,134 to 3,631,709 _03444 MPMX20_03445: MPMX20_03445 - L-aspartate oxidase, at 3,632,134 to 3,633,753 _03445 MPMX20_03446: MPMX20_03446 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 3,633,738 to 3,634,475 _03446 MPMX20_03447: MPMX20_03447 - ATP-dependent RNA helicase SrmB, at 3,634,608 to 3,635,936 _03447 Position (kb) 3632 3633 3634Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3631.799 kb on - strandat 3631.881 kb on - strandat 3631.881 kb on - strandat 3631.940 kb on + strandat 3631.940 kb on + strandat 3631.948 kb on - strandat 3631.958 kb on - strandat 3632.017 kb on + strandat 3632.026 kb on - strandat 3632.026 kb on - strandat 3632.027 kb on - strandat 3632.147 kb on - strandat 3632.149 kb on + strandat 3632.162 kb on - strandat 3632.167 kb on - strandat 3632.198 kb on + strandat 3632.198 kb on + strandat 3632.221 kb on + strandat 3632.264 kb on + strandat 3632.318 kb on + strand, within MPMX20_03445at 3632.436 kb on - strand, within MPMX20_03445at 3632.460 kb on + strand, within MPMX20_03445at 3632.482 kb on + strand, within MPMX20_03445at 3632.515 kb on - strand, within MPMX20_03445at 3632.521 kb on - strand, within MPMX20_03445at 3632.551 kb on + strand, within MPMX20_03445at 3632.565 kb on + strand, within MPMX20_03445at 3632.575 kb on + strand, within MPMX20_03445at 3632.575 kb on + strand, within MPMX20_03445at 3632.578 kb on - strand, within MPMX20_03445at 3632.583 kb on - strand, within MPMX20_03445at 3632.721 kb on + strand, within MPMX20_03445at 3632.743 kb on + strand, within MPMX20_03445at 3632.777 kb on - strand, within MPMX20_03445at 3632.777 kb on - strand, within MPMX20_03445at 3632.781 kb on + strand, within MPMX20_03445at 3632.817 kb on - strand, within MPMX20_03445at 3632.947 kb on + strand, within MPMX20_03445at 3633.082 kb on - strand, within MPMX20_03445at 3633.184 kb on + strand, within MPMX20_03445at 3633.192 kb on - strand, within MPMX20_03445at 3633.192 kb on - strand, within MPMX20_03445at 3633.227 kb on - strand, within MPMX20_03445at 3633.261 kb on + strand, within MPMX20_03445at 3633.351 kb on - strand, within MPMX20_03445at 3633.364 kb on + strand, within MPMX20_03445at 3633.372 kb on - strand, within MPMX20_03445at 3633.372 kb on - strand, within MPMX20_03445at 3633.408 kb on - strand, within MPMX20_03445at 3633.408 kb on - strand, within MPMX20_03445at 3633.660 kb on + strandat 3633.684 kb on + strandat 3633.728 kb on + strandat 3633.749 kb on + strandat 3633.762 kb on + strandat 3633.762 kb on + strandat 3633.762 kb on + strandat 3633.762 kb on + strandat 3633.770 kb on - strandat 3633.770 kb on - strandat 3633.770 kb on - strandat 3633.770 kb on - strandat 3633.789 kb on + strandat 3633.792 kb on - strandat 3633.797 kb on - strandat 3633.802 kb on - strandat 3633.821 kb on + strand, within MPMX20_03446at 3633.898 kb on - strand, within MPMX20_03446at 3634.017 kb on + strand, within MPMX20_03446at 3634.020 kb on - strand, within MPMX20_03446at 3634.025 kb on - strand, within MPMX20_03446at 3634.025 kb on - strand, within MPMX20_03446at 3634.025 kb on - strand, within MPMX20_03446at 3634.036 kb on - strand, within MPMX20_03446at 3634.061 kb on + strand, within MPMX20_03446at 3634.067 kb on + strand, within MPMX20_03446at 3634.163 kb on + strand, within MPMX20_03446at 3634.163 kb on + strand, within MPMX20_03446at 3634.171 kb on - strand, within MPMX20_03446at 3634.171 kb on - strand, within MPMX20_03446at 3634.177 kb on + strand, within MPMX20_03446at 3634.185 kb on - strand, within MPMX20_03446at 3634.301 kb on - strand, within MPMX20_03446at 3634.345 kb on - strand, within MPMX20_03446at 3634.412 kb on - strandat 3634.475 kb on + strandat 3634.483 kb on - strandat 3634.508 kb on + strandat 3634.508 kb on + strandat 3634.508 kb on + strandat 3634.508 kb on + strandat 3634.513 kb on + strandat 3634.516 kb on - strandat 3634.516 kb on - strandat 3634.560 kb on + strandat 3634.567 kb on + strandat 3634.593 kb on + strandat 3634.607 kb on - strandat 3634.650 kb on - strandat 3634.728 kb on - strandat 3634.737 kb on + strandat 3634.744 kb on + strand, within MPMX20_03447at 3634.744 kb on + strand, within MPMX20_03447

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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3,631,799 - -0.9
3,631,881 - +1.5
3,631,881 - +0.2
3,631,940 + -1.0
3,631,940 + -0.0
3,631,948 - -0.5
3,631,958 - -0.6
3,632,017 + -1.4
3,632,026 - +1.0
3,632,026 - +3.1
3,632,027 - -0.0
3,632,147 - +0.8
3,632,149 + -1.5
3,632,162 - -1.2
3,632,167 - -1.0
3,632,198 + +1.3
3,632,198 + -0.7
3,632,221 + +0.1
3,632,264 + -2.6
3,632,318 + MPMX20_03445 0.11 +1.5
3,632,436 - MPMX20_03445 0.19 -2.5
3,632,460 + MPMX20_03445 0.20 -2.9
3,632,482 + MPMX20_03445 0.21 -0.0
3,632,515 - MPMX20_03445 0.24 -1.2
3,632,521 - MPMX20_03445 0.24 -0.0
3,632,551 + MPMX20_03445 0.26 +0.1
3,632,565 + MPMX20_03445 0.27 -1.8
3,632,575 + MPMX20_03445 0.27 -2.8
3,632,575 + MPMX20_03445 0.27 -1.8
3,632,578 - MPMX20_03445 0.27 -2.0
3,632,583 - MPMX20_03445 0.28 -2.7
3,632,721 + MPMX20_03445 0.36 +0.5
3,632,743 + MPMX20_03445 0.38 -2.2
3,632,777 - MPMX20_03445 0.40 -1.1
3,632,777 - MPMX20_03445 0.40 -0.5
3,632,781 + MPMX20_03445 0.40 -0.5
3,632,817 - MPMX20_03445 0.42 -1.2
3,632,947 + MPMX20_03445 0.50 -1.8
3,633,082 - MPMX20_03445 0.59 -1.3
3,633,184 + MPMX20_03445 0.65 -2.7
3,633,192 - MPMX20_03445 0.65 -1.2
3,633,192 - MPMX20_03445 0.65 -0.9
3,633,227 - MPMX20_03445 0.67 -2.0
3,633,261 + MPMX20_03445 0.70 -2.0
3,633,351 - MPMX20_03445 0.75 +0.2
3,633,364 + MPMX20_03445 0.76 -2.7
3,633,372 - MPMX20_03445 0.76 -1.2
3,633,372 - MPMX20_03445 0.76 -0.6
3,633,408 - MPMX20_03445 0.79 -2.8
3,633,408 - MPMX20_03445 0.79 -0.4
3,633,660 + -0.3
3,633,684 + -1.7
3,633,728 + +0.5
3,633,749 + +1.2
3,633,762 + -2.7
3,633,762 + -0.4
3,633,762 + +1.0
3,633,762 + -0.5
3,633,770 - +0.2
3,633,770 - +0.9
3,633,770 - +0.4
3,633,770 - +0.2
3,633,789 + +1.1
3,633,792 - -0.2
3,633,797 - -2.2
3,633,802 - -2.0
3,633,821 + MPMX20_03446 0.11 +1.0
3,633,898 - MPMX20_03446 0.22 +0.1
3,634,017 + MPMX20_03446 0.38 +0.5
3,634,020 - MPMX20_03446 0.38 -0.0
3,634,025 - MPMX20_03446 0.39 -0.2
3,634,025 - MPMX20_03446 0.39 +1.0
3,634,025 - MPMX20_03446 0.39 -2.8
3,634,036 - MPMX20_03446 0.40 +0.1
3,634,061 + MPMX20_03446 0.44 -0.7
3,634,067 + MPMX20_03446 0.45 -0.1
3,634,163 + MPMX20_03446 0.58 +0.7
3,634,163 + MPMX20_03446 0.58 +2.5
3,634,171 - MPMX20_03446 0.59 +0.2
3,634,171 - MPMX20_03446 0.59 -1.2
3,634,177 + MPMX20_03446 0.59 -0.5
3,634,185 - MPMX20_03446 0.61 +0.6
3,634,301 - MPMX20_03446 0.76 -1.4
3,634,345 - MPMX20_03446 0.82 -0.2
3,634,412 - +0.2
3,634,475 + -0.8
3,634,483 - +1.8
3,634,508 + -2.3
3,634,508 + -0.3
3,634,508 + -0.3
3,634,508 + +2.9
3,634,513 + +1.1
3,634,516 - +2.8
3,634,516 - -0.8
3,634,560 + -1.4
3,634,567 + +1.5
3,634,593 + -0.8
3,634,607 - +1.0
3,634,650 - -0.5
3,634,728 - -0.3
3,634,737 + -0.3
3,634,744 + MPMX20_03447 0.10 -2.0
3,634,744 + MPMX20_03447 0.10 -0.9

Or see this region's nucleotide sequence