Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03349 and MPMX20_03350 are separated by 56 nucleotides MPMX20_03350 and MPMX20_03351 are separated by 203 nucleotides
MPMX20_03349: MPMX20_03349 - cytosol aminopeptidase, at 3,522,300 to 3,523,721
_03349
MPMX20_03350: MPMX20_03350 - DnaA regulatory inactivator Hda, at 3,523,778 to 3,524,371
_03350
MPMX20_03351: MPMX20_03351 - Uracil permease, at 3,524,575 to 3,525,864
_03351
Position (kb)
3523
3524
3525 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3522.849 kb on - strand, within MPMX20_03349 at 3522.880 kb on - strand, within MPMX20_03349 at 3522.911 kb on + strand, within MPMX20_03349 at 3522.911 kb on + strand, within MPMX20_03349 at 3522.921 kb on - strand, within MPMX20_03349 at 3522.950 kb on - strand, within MPMX20_03349 at 3522.977 kb on + strand, within MPMX20_03349 at 3522.983 kb on + strand, within MPMX20_03349 at 3523.023 kb on + strand, within MPMX20_03349 at 3523.023 kb on + strand, within MPMX20_03349 at 3523.055 kb on + strand, within MPMX20_03349 at 3523.068 kb on + strand, within MPMX20_03349 at 3523.076 kb on - strand, within MPMX20_03349 at 3523.084 kb on + strand, within MPMX20_03349 at 3523.117 kb on + strand, within MPMX20_03349 at 3523.127 kb on + strand, within MPMX20_03349 at 3523.219 kb on - strand, within MPMX20_03349 at 3523.219 kb on - strand, within MPMX20_03349 at 3523.311 kb on + strand, within MPMX20_03349 at 3523.377 kb on + strand, within MPMX20_03349 at 3523.466 kb on + strand, within MPMX20_03349 at 3523.466 kb on + strand, within MPMX20_03349 at 3523.467 kb on - strand, within MPMX20_03349 at 3523.467 kb on - strand, within MPMX20_03349 at 3523.467 kb on - strand, within MPMX20_03349 at 3523.474 kb on - strand, within MPMX20_03349 at 3523.519 kb on + strand, within MPMX20_03349 at 3523.527 kb on - strand, within MPMX20_03349 at 3523.529 kb on + strand, within MPMX20_03349 at 3523.529 kb on + strand, within MPMX20_03349 at 3523.529 kb on + strand, within MPMX20_03349 at 3523.529 kb on + strand, within MPMX20_03349 at 3523.537 kb on - strand, within MPMX20_03349 at 3523.616 kb on - strand at 3523.646 kb on - strand at 3523.722 kb on + strand at 3523.730 kb on - strand at 3523.740 kb on + strand at 3524.538 kb on + strand at 3524.543 kb on + strand at 3524.546 kb on - strand at 3524.663 kb on - strand at 3524.664 kb on - strand at 3524.713 kb on + strand, within MPMX20_03351 at 3524.721 kb on + strand, within MPMX20_03351 at 3524.729 kb on - strand, within MPMX20_03351 at 3524.866 kb on - strand, within MPMX20_03351 at 3524.866 kb on - strand, within MPMX20_03351 at 3524.917 kb on + strand, within MPMX20_03351 at 3524.922 kb on - strand, within MPMX20_03351 at 3525.023 kb on - strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.073 kb on + strand, within MPMX20_03351 at 3525.081 kb on - strand, within MPMX20_03351 at 3525.081 kb on - strand, within MPMX20_03351 at 3525.130 kb on - strand, within MPMX20_03351 at 3525.142 kb on - strand, within MPMX20_03351 at 3525.146 kb on + strand, within MPMX20_03351 at 3525.212 kb on - strand, within MPMX20_03351 at 3525.240 kb on - strand, within MPMX20_03351 at 3525.285 kb on - strand, within MPMX20_03351 at 3525.355 kb on - strand, within MPMX20_03351
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 3,522,849 - MPMX20_03349 0.39 +0.5 3,522,880 - MPMX20_03349 0.41 +0.6 3,522,911 + MPMX20_03349 0.43 -0.4 3,522,911 + MPMX20_03349 0.43 +1.6 3,522,921 - MPMX20_03349 0.44 -1.7 3,522,950 - MPMX20_03349 0.46 -0.4 3,522,977 + MPMX20_03349 0.48 -1.1 3,522,983 + MPMX20_03349 0.48 +0.3 3,523,023 + MPMX20_03349 0.51 -0.6 3,523,023 + MPMX20_03349 0.51 +0.6 3,523,055 + MPMX20_03349 0.53 -0.8 3,523,068 + MPMX20_03349 0.54 -0.4 3,523,076 - MPMX20_03349 0.55 -0.2 3,523,084 + MPMX20_03349 0.55 -1.3 3,523,117 + MPMX20_03349 0.57 +0.0 3,523,127 + MPMX20_03349 0.58 -0.7 3,523,219 - MPMX20_03349 0.65 +1.0 3,523,219 - MPMX20_03349 0.65 -0.2 3,523,311 + MPMX20_03349 0.71 +0.6 3,523,377 + MPMX20_03349 0.76 -1.2 3,523,466 + MPMX20_03349 0.82 +0.5 3,523,466 + MPMX20_03349 0.82 +1.6 3,523,467 - MPMX20_03349 0.82 +1.3 3,523,467 - MPMX20_03349 0.82 +2.2 3,523,467 - MPMX20_03349 0.82 -0.2 3,523,474 - MPMX20_03349 0.83 -1.3 3,523,519 + MPMX20_03349 0.86 -1.4 3,523,527 - MPMX20_03349 0.86 -1.2 3,523,529 + MPMX20_03349 0.86 +0.3 3,523,529 + MPMX20_03349 0.86 -1.0 3,523,529 + MPMX20_03349 0.86 +1.0 3,523,529 + MPMX20_03349 0.86 +0.9 3,523,537 - MPMX20_03349 0.87 -0.1 3,523,616 - -1.4 3,523,646 - -2.1 3,523,722 + -0.1 3,523,730 - +2.6 3,523,740 + -0.9 3,524,538 + -0.3 3,524,543 + -3.1 3,524,546 - +0.6 3,524,663 - +1.4 3,524,664 - -0.7 3,524,713 + MPMX20_03351 0.11 -0.1 3,524,721 + MPMX20_03351 0.11 +0.4 3,524,729 - MPMX20_03351 0.12 +0.6 3,524,866 - MPMX20_03351 0.23 +0.3 3,524,866 - MPMX20_03351 0.23 +0.0 3,524,917 + MPMX20_03351 0.27 +0.6 3,524,922 - MPMX20_03351 0.27 +1.0 3,525,023 - MPMX20_03351 0.35 -0.2 3,525,073 + MPMX20_03351 0.39 -1.2 3,525,073 + MPMX20_03351 0.39 +0.4 3,525,073 + MPMX20_03351 0.39 +0.1 3,525,073 + MPMX20_03351 0.39 +1.1 3,525,073 + MPMX20_03351 0.39 +0.1 3,525,073 + MPMX20_03351 0.39 -0.9 3,525,081 - MPMX20_03351 0.39 -0.2 3,525,081 - MPMX20_03351 0.39 +2.7 3,525,130 - MPMX20_03351 0.43 +1.7 3,525,142 - MPMX20_03351 0.44 +0.0 3,525,146 + MPMX20_03351 0.44 -0.5 3,525,212 - MPMX20_03351 0.49 +1.2 3,525,240 - MPMX20_03351 0.52 -0.3 3,525,285 - MPMX20_03351 0.55 -0.6 3,525,355 - MPMX20_03351 0.60 +1.2
Or see this region's nucleotide sequence