Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03278

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03277 and MPMX20_03278 are separated by 228 nucleotidesMPMX20_03278 and MPMX20_03279 are separated by 47 nucleotides MPMX20_03277: MPMX20_03277 - Glutamate-pyruvate aminotransferase AlaC, at 3,448,646 to 3,449,884 _03277 MPMX20_03278: MPMX20_03278 - hypothetical protein, at 3,450,113 to 3,450,241 _03278 MPMX20_03279: MPMX20_03279 - Sensor histidine kinase YpdA, at 3,450,289 to 3,451,968 _03279 Position (kb) 3450 3451Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3449.116 kb on + strand, within MPMX20_03277at 3449.116 kb on + strand, within MPMX20_03277at 3449.124 kb on - strand, within MPMX20_03277at 3449.201 kb on - strand, within MPMX20_03277at 3449.236 kb on - strand, within MPMX20_03277at 3449.274 kb on + strand, within MPMX20_03277at 3449.288 kb on - strand, within MPMX20_03277at 3449.432 kb on - strand, within MPMX20_03277at 3449.455 kb on - strand, within MPMX20_03277at 3449.514 kb on + strand, within MPMX20_03277at 3449.620 kb on + strand, within MPMX20_03277at 3449.620 kb on + strand, within MPMX20_03277at 3449.653 kb on + strand, within MPMX20_03277at 3449.668 kb on + strand, within MPMX20_03277at 3449.706 kb on + strand, within MPMX20_03277at 3449.742 kb on - strand, within MPMX20_03277at 3449.748 kb on + strand, within MPMX20_03277at 3449.748 kb on + strand, within MPMX20_03277at 3449.814 kb on - strandat 3449.814 kb on - strandat 3449.819 kb on + strandat 3449.868 kb on + strandat 3449.876 kb on - strandat 3449.903 kb on - strandat 3449.939 kb on - strandat 3450.046 kb on + strandat 3450.068 kb on - strandat 3450.142 kb on + strand, within MPMX20_03278at 3450.142 kb on + strand, within MPMX20_03278at 3450.160 kb on - strand, within MPMX20_03278at 3450.194 kb on + strand, within MPMX20_03278at 3450.206 kb on - strand, within MPMX20_03278at 3450.265 kb on - strandat 3450.265 kb on - strandat 3450.325 kb on - strandat 3450.380 kb on + strandat 3450.388 kb on - strandat 3450.388 kb on - strandat 3450.392 kb on + strandat 3450.400 kb on - strandat 3450.423 kb on - strandat 3450.424 kb on - strandat 3450.441 kb on + strandat 3450.449 kb on - strandat 3450.452 kb on + strandat 3450.527 kb on + strand, within MPMX20_03279at 3450.562 kb on + strand, within MPMX20_03279at 3450.646 kb on + strand, within MPMX20_03279at 3450.650 kb on - strand, within MPMX20_03279at 3450.711 kb on - strand, within MPMX20_03279at 3450.733 kb on - strand, within MPMX20_03279at 3450.797 kb on + strand, within MPMX20_03279at 3450.824 kb on + strand, within MPMX20_03279at 3450.867 kb on + strand, within MPMX20_03279at 3450.867 kb on + strand, within MPMX20_03279at 3450.933 kb on - strand, within MPMX20_03279at 3450.937 kb on - strand, within MPMX20_03279at 3451.029 kb on + strand, within MPMX20_03279at 3451.029 kb on + strand, within MPMX20_03279at 3451.076 kb on + strand, within MPMX20_03279at 3451.091 kb on + strand, within MPMX20_03279at 3451.237 kb on + strand, within MPMX20_03279

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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3,449,116 + MPMX20_03277 0.38 -0.0
3,449,116 + MPMX20_03277 0.38 +1.7
3,449,124 - MPMX20_03277 0.39 -1.3
3,449,201 - MPMX20_03277 0.45 +0.6
3,449,236 - MPMX20_03277 0.48 -2.0
3,449,274 + MPMX20_03277 0.51 +0.4
3,449,288 - MPMX20_03277 0.52 -1.0
3,449,432 - MPMX20_03277 0.63 -2.4
3,449,455 - MPMX20_03277 0.65 -0.8
3,449,514 + MPMX20_03277 0.70 -0.4
3,449,620 + MPMX20_03277 0.79 -1.7
3,449,620 + MPMX20_03277 0.79 -0.5
3,449,653 + MPMX20_03277 0.81 +0.2
3,449,668 + MPMX20_03277 0.82 +0.0
3,449,706 + MPMX20_03277 0.86 -2.1
3,449,742 - MPMX20_03277 0.88 -0.6
3,449,748 + MPMX20_03277 0.89 -2.5
3,449,748 + MPMX20_03277 0.89 +1.9
3,449,814 - -3.1
3,449,814 - -1.2
3,449,819 + +0.3
3,449,868 + -1.7
3,449,876 - -0.3
3,449,903 - +0.6
3,449,939 - +0.4
3,450,046 + -1.1
3,450,068 - -1.3
3,450,142 + MPMX20_03278 0.22 -0.7
3,450,142 + MPMX20_03278 0.22 -0.8
3,450,160 - MPMX20_03278 0.36 -1.8
3,450,194 + MPMX20_03278 0.63 -0.1
3,450,206 - MPMX20_03278 0.72 -0.8
3,450,265 - +0.2
3,450,265 - +3.1
3,450,325 - +1.0
3,450,380 + +0.7
3,450,388 - +0.8
3,450,388 - +1.1
3,450,392 + +0.2
3,450,400 - -0.1
3,450,423 - +2.6
3,450,424 - -2.2
3,450,441 + +0.3
3,450,449 - +0.3
3,450,452 + -0.6
3,450,527 + MPMX20_03279 0.14 -0.7
3,450,562 + MPMX20_03279 0.16 -0.2
3,450,646 + MPMX20_03279 0.21 +0.0
3,450,650 - MPMX20_03279 0.21 -1.0
3,450,711 - MPMX20_03279 0.25 +0.3
3,450,733 - MPMX20_03279 0.26 -2.0
3,450,797 + MPMX20_03279 0.30 +1.3
3,450,824 + MPMX20_03279 0.32 -0.4
3,450,867 + MPMX20_03279 0.34 -1.1
3,450,867 + MPMX20_03279 0.34 +1.7
3,450,933 - MPMX20_03279 0.38 -0.9
3,450,937 - MPMX20_03279 0.39 +0.0
3,451,029 + MPMX20_03279 0.44 +0.3
3,451,029 + MPMX20_03279 0.44 +1.0
3,451,076 + MPMX20_03279 0.47 +1.9
3,451,091 + MPMX20_03279 0.48 -0.2
3,451,237 + MPMX20_03279 0.56 -0.2

Or see this region's nucleotide sequence