Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02787 and MPMX20_02788 overlap by 4 nucleotides MPMX20_02788 and MPMX20_02789 are separated by 19 nucleotides
MPMX20_02787: MPMX20_02787 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 2,942,316 to 2,943,365
_02787
MPMX20_02788: MPMX20_02788 - Chemotaxis protein methyltransferase, at 2,943,362 to 2,944,228
_02788
MPMX20_02789: MPMX20_02789 - Methyl-accepting chemotaxis protein IV, at 2,944,248 to 2,945,849
_02789
Position (kb)
2943
2944
2945 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2942.508 kb on + strand, within MPMX20_02787 at 2942.671 kb on - strand, within MPMX20_02787 at 2942.693 kb on - strand, within MPMX20_02787 at 2942.739 kb on + strand, within MPMX20_02787 at 2942.767 kb on - strand, within MPMX20_02787 at 2942.791 kb on + strand, within MPMX20_02787 at 2942.791 kb on - strand, within MPMX20_02787 at 2942.907 kb on + strand, within MPMX20_02787 at 2942.915 kb on - strand, within MPMX20_02787 at 2942.929 kb on + strand, within MPMX20_02787 at 2943.086 kb on + strand, within MPMX20_02787 at 2943.121 kb on - strand, within MPMX20_02787 at 2943.406 kb on + strand at 2943.463 kb on + strand, within MPMX20_02788 at 2943.468 kb on + strand, within MPMX20_02788 at 2943.468 kb on + strand, within MPMX20_02788 at 2943.468 kb on + strand, within MPMX20_02788 at 2943.476 kb on - strand, within MPMX20_02788 at 2943.615 kb on + strand, within MPMX20_02788 at 2943.641 kb on + strand, within MPMX20_02788 at 2943.658 kb on + strand, within MPMX20_02788 at 2943.658 kb on + strand, within MPMX20_02788 at 2943.675 kb on + strand, within MPMX20_02788 at 2943.689 kb on + strand, within MPMX20_02788 at 2943.697 kb on - strand, within MPMX20_02788 at 2943.699 kb on - strand, within MPMX20_02788 at 2943.773 kb on + strand, within MPMX20_02788 at 2943.788 kb on - strand, within MPMX20_02788 at 2943.822 kb on - strand, within MPMX20_02788 at 2943.834 kb on + strand, within MPMX20_02788 at 2943.844 kb on - strand, within MPMX20_02788 at 2943.867 kb on + strand, within MPMX20_02788 at 2943.867 kb on + strand, within MPMX20_02788 at 2943.880 kb on + strand, within MPMX20_02788 at 2943.918 kb on + strand, within MPMX20_02788 at 2943.920 kb on + strand, within MPMX20_02788 at 2943.952 kb on + strand, within MPMX20_02788 at 2943.960 kb on - strand, within MPMX20_02788 at 2943.985 kb on + strand, within MPMX20_02788 at 2943.995 kb on + strand, within MPMX20_02788 at 2943.995 kb on + strand, within MPMX20_02788 at 2943.995 kb on + strand, within MPMX20_02788 at 2943.995 kb on + strand, within MPMX20_02788 at 2943.995 kb on + strand, within MPMX20_02788 at 2943.995 kb on + strand, within MPMX20_02788 at 2943.995 kb on + strand, within MPMX20_02788 at 2943.998 kb on - strand, within MPMX20_02788 at 2944.003 kb on - strand, within MPMX20_02788 at 2944.003 kb on - strand, within MPMX20_02788 at 2944.003 kb on - strand, within MPMX20_02788 at 2944.042 kb on + strand, within MPMX20_02788 at 2944.073 kb on + strand, within MPMX20_02788 at 2944.073 kb on + strand, within MPMX20_02788 at 2944.073 kb on + strand, within MPMX20_02788 at 2944.073 kb on + strand, within MPMX20_02788 at 2944.073 kb on + strand, within MPMX20_02788 at 2944.081 kb on - strand, within MPMX20_02788 at 2944.081 kb on - strand, within MPMX20_02788 at 2944.081 kb on - strand, within MPMX20_02788 at 2944.081 kb on - strand, within MPMX20_02788 at 2944.081 kb on - strand, within MPMX20_02788 at 2944.192 kb on + strand at 2944.256 kb on + strand at 2944.267 kb on + strand at 2944.275 kb on - strand at 2944.313 kb on + strand at 2944.461 kb on + strand, within MPMX20_02789 at 2944.492 kb on + strand, within MPMX20_02789 at 2944.519 kb on - strand, within MPMX20_02789 at 2944.562 kb on + strand, within MPMX20_02789 at 2944.565 kb on - strand, within MPMX20_02789 at 2944.565 kb on - strand, within MPMX20_02789 at 2944.570 kb on - strand, within MPMX20_02789 at 2944.570 kb on - strand, within MPMX20_02789 at 2944.577 kb on - strand, within MPMX20_02789 at 2944.806 kb on + strand, within MPMX20_02789 at 2944.813 kb on + strand, within MPMX20_02789 at 2944.813 kb on + strand, within MPMX20_02789 at 2944.868 kb on + strand, within MPMX20_02789 at 2944.875 kb on - strand, within MPMX20_02789 at 2944.875 kb on - strand, within MPMX20_02789 at 2944.877 kb on + strand, within MPMX20_02789 at 2944.877 kb on + strand, within MPMX20_02789 at 2944.885 kb on - strand, within MPMX20_02789 at 2944.885 kb on - strand, within MPMX20_02789 at 2944.885 kb on - strand, within MPMX20_02789 at 2944.921 kb on + strand, within MPMX20_02789 at 2944.931 kb on + strand, within MPMX20_02789 at 2945.033 kb on + strand, within MPMX20_02789 at 2945.090 kb on + strand, within MPMX20_02789 at 2945.152 kb on + strand, within MPMX20_02789 at 2945.152 kb on + strand, within MPMX20_02789 at 2945.160 kb on - strand, within MPMX20_02789 at 2945.160 kb on - strand, within MPMX20_02789 at 2945.170 kb on - strand, within MPMX20_02789 at 2945.226 kb on + strand, within MPMX20_02789 at 2945.226 kb on + strand, within MPMX20_02789 at 2945.226 kb on + strand, within MPMX20_02789 at 2945.226 kb on + strand, within MPMX20_02789
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 2,942,508 + MPMX20_02787 0.18 -1.4 2,942,671 - MPMX20_02787 0.34 -0.6 2,942,693 - MPMX20_02787 0.36 -2.2 2,942,739 + MPMX20_02787 0.40 +0.2 2,942,767 - MPMX20_02787 0.43 +0.3 2,942,791 + MPMX20_02787 0.45 -1.3 2,942,791 - MPMX20_02787 0.45 -1.8 2,942,907 + MPMX20_02787 0.56 +0.3 2,942,915 - MPMX20_02787 0.57 -0.4 2,942,929 + MPMX20_02787 0.58 -2.7 2,943,086 + MPMX20_02787 0.73 -0.7 2,943,121 - MPMX20_02787 0.77 -0.5 2,943,406 + -2.4 2,943,463 + MPMX20_02788 0.12 -1.3 2,943,468 + MPMX20_02788 0.12 +0.5 2,943,468 + MPMX20_02788 0.12 -2.0 2,943,468 + MPMX20_02788 0.12 -2.3 2,943,476 - MPMX20_02788 0.13 +1.5 2,943,615 + MPMX20_02788 0.29 -1.9 2,943,641 + MPMX20_02788 0.32 +0.3 2,943,658 + MPMX20_02788 0.34 -0.5 2,943,658 + MPMX20_02788 0.34 -2.1 2,943,675 + MPMX20_02788 0.36 -0.5 2,943,689 + MPMX20_02788 0.38 -2.4 2,943,697 - MPMX20_02788 0.39 +0.5 2,943,699 - MPMX20_02788 0.39 -2.4 2,943,773 + MPMX20_02788 0.47 +0.1 2,943,788 - MPMX20_02788 0.49 +1.5 2,943,822 - MPMX20_02788 0.53 -2.0 2,943,834 + MPMX20_02788 0.54 -0.9 2,943,844 - MPMX20_02788 0.56 -1.2 2,943,867 + MPMX20_02788 0.58 -1.3 2,943,867 + MPMX20_02788 0.58 -1.0 2,943,880 + MPMX20_02788 0.60 -1.4 2,943,918 + MPMX20_02788 0.64 +0.6 2,943,920 + MPMX20_02788 0.64 -1.0 2,943,952 + MPMX20_02788 0.68 -1.5 2,943,960 - MPMX20_02788 0.69 -0.3 2,943,985 + MPMX20_02788 0.72 -0.3 2,943,995 + MPMX20_02788 0.73 -2.7 2,943,995 + MPMX20_02788 0.73 -0.3 2,943,995 + MPMX20_02788 0.73 -0.1 2,943,995 + MPMX20_02788 0.73 +1.4 2,943,995 + MPMX20_02788 0.73 +0.5 2,943,995 + MPMX20_02788 0.73 +0.9 2,943,995 + MPMX20_02788 0.73 -3.4 2,943,998 - MPMX20_02788 0.73 -0.1 2,944,003 - MPMX20_02788 0.74 -1.4 2,944,003 - MPMX20_02788 0.74 -1.1 2,944,003 - MPMX20_02788 0.74 +0.6 2,944,042 + MPMX20_02788 0.78 -1.3 2,944,073 + MPMX20_02788 0.82 -0.2 2,944,073 + MPMX20_02788 0.82 -1.0 2,944,073 + MPMX20_02788 0.82 -2.1 2,944,073 + MPMX20_02788 0.82 -1.5 2,944,073 + MPMX20_02788 0.82 -2.0 2,944,081 - MPMX20_02788 0.83 -1.3 2,944,081 - MPMX20_02788 0.83 -1.3 2,944,081 - MPMX20_02788 0.83 -0.8 2,944,081 - MPMX20_02788 0.83 +0.0 2,944,081 - MPMX20_02788 0.83 -1.7 2,944,192 + -0.9 2,944,256 + -0.1 2,944,267 + -0.5 2,944,275 - -0.8 2,944,313 + -0.9 2,944,461 + MPMX20_02789 0.13 -0.5 2,944,492 + MPMX20_02789 0.15 -1.3 2,944,519 - MPMX20_02789 0.17 -0.8 2,944,562 + MPMX20_02789 0.20 +0.7 2,944,565 - MPMX20_02789 0.20 -1.0 2,944,565 - MPMX20_02789 0.20 -0.7 2,944,570 - MPMX20_02789 0.20 +0.0 2,944,570 - MPMX20_02789 0.20 -0.6 2,944,577 - MPMX20_02789 0.21 +2.5 2,944,806 + MPMX20_02789 0.35 -0.6 2,944,813 + MPMX20_02789 0.35 +0.2 2,944,813 + MPMX20_02789 0.35 -1.4 2,944,868 + MPMX20_02789 0.39 -0.8 2,944,875 - MPMX20_02789 0.39 +0.9 2,944,875 - MPMX20_02789 0.39 -0.0 2,944,877 + MPMX20_02789 0.39 -0.7 2,944,877 + MPMX20_02789 0.39 -1.8 2,944,885 - MPMX20_02789 0.40 +0.7 2,944,885 - MPMX20_02789 0.40 +0.1 2,944,885 - MPMX20_02789 0.40 -1.5 2,944,921 + MPMX20_02789 0.42 -1.2 2,944,931 + MPMX20_02789 0.43 -2.2 2,945,033 + MPMX20_02789 0.49 -0.1 2,945,090 + MPMX20_02789 0.53 -1.7 2,945,152 + MPMX20_02789 0.56 -0.2 2,945,152 + MPMX20_02789 0.56 -0.5 2,945,160 - MPMX20_02789 0.57 +1.2 2,945,160 - MPMX20_02789 0.57 +0.2 2,945,170 - MPMX20_02789 0.58 +0.5 2,945,226 + MPMX20_02789 0.61 -0.1 2,945,226 + MPMX20_02789 0.61 -0.1 2,945,226 + MPMX20_02789 0.61 -0.5 2,945,226 + MPMX20_02789 0.61 +0.2
Or see this region's nucleotide sequence