Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02747 and MPMX20_02748 are separated by 1 nucleotides MPMX20_02748 and MPMX20_02749 are separated by 137 nucleotides MPMX20_02749 and MPMX20_02750 are separated by 109 nucleotides MPMX20_02750 and MPMX20_02751 are separated by 24 nucleotides
MPMX20_02747: MPMX20_02747 - Inner membrane protein YebZ, at 2,902,369 to 2,903,238
_02747
MPMX20_02748: MPMX20_02748 - Protein YobA, at 2,903,240 to 2,903,611
_02748
MPMX20_02749: MPMX20_02749 - DNA polymerase III subunit theta, at 2,903,749 to 2,903,979
_02749
MPMX20_02750: MPMX20_02750 - hypothetical protein, at 2,904,089 to 2,904,739
_02750
MPMX20_02751: MPMX20_02751 - Exodeoxyribonuclease 10, at 2,904,764 to 2,905,426
_02751
Position (kb)
2903
2904 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2902.752 kb on + strand, within MPMX20_02747 at 2902.770 kb on - strand, within MPMX20_02747 at 2902.777 kb on + strand, within MPMX20_02747 at 2902.779 kb on + strand, within MPMX20_02747 at 2902.785 kb on - strand, within MPMX20_02747 at 2902.785 kb on - strand, within MPMX20_02747 at 2902.800 kb on + strand, within MPMX20_02747 at 2902.847 kb on - strand, within MPMX20_02747 at 2902.866 kb on + strand, within MPMX20_02747 at 2902.866 kb on + strand, within MPMX20_02747 at 2902.866 kb on + strand, within MPMX20_02747 at 2902.874 kb on - strand, within MPMX20_02747 at 2902.874 kb on - strand, within MPMX20_02747 at 2902.874 kb on - strand, within MPMX20_02747 at 2902.874 kb on - strand, within MPMX20_02747 at 2902.876 kb on - strand, within MPMX20_02747 at 2902.894 kb on + strand, within MPMX20_02747 at 2902.894 kb on + strand, within MPMX20_02747 at 2902.955 kb on + strand, within MPMX20_02747 at 2902.964 kb on + strand, within MPMX20_02747 at 2902.986 kb on - strand, within MPMX20_02747 at 2902.986 kb on - strand, within MPMX20_02747 at 2902.988 kb on - strand, within MPMX20_02747 at 2902.997 kb on + strand, within MPMX20_02747 at 2903.064 kb on - strand, within MPMX20_02747 at 2903.088 kb on - strand, within MPMX20_02747 at 2903.150 kb on + strand, within MPMX20_02747 at 2903.159 kb on + strand at 2903.169 kb on - strand at 2903.169 kb on - strand at 2903.209 kb on + strand at 2903.214 kb on + strand at 2903.214 kb on + strand at 2903.214 kb on + strand at 2903.217 kb on - strand at 2903.217 kb on - strand at 2903.222 kb on - strand at 2903.222 kb on - strand at 2903.222 kb on - strand at 2903.227 kb on - strand at 2903.399 kb on + strand, within MPMX20_02748 at 2903.404 kb on + strand, within MPMX20_02748 at 2903.443 kb on + strand, within MPMX20_02748 at 2903.443 kb on + strand, within MPMX20_02748 at 2903.451 kb on - strand, within MPMX20_02748 at 2903.510 kb on + strand, within MPMX20_02748 at 2903.510 kb on + strand, within MPMX20_02748 at 2903.523 kb on + strand, within MPMX20_02748 at 2903.546 kb on + strand, within MPMX20_02748 at 2903.554 kb on - strand, within MPMX20_02748 at 2903.600 kb on + strand at 2903.600 kb on + strand at 2903.600 kb on + strand at 2903.608 kb on - strand at 2903.608 kb on - strand at 2903.609 kb on - strand at 2903.609 kb on - strand at 2903.656 kb on - strand at 2903.690 kb on + strand at 2903.768 kb on + strand at 2903.833 kb on - strand, within MPMX20_02749 at 2903.835 kb on + strand, within MPMX20_02749 at 2903.835 kb on + strand, within MPMX20_02749 at 2903.865 kb on + strand, within MPMX20_02749 at 2903.865 kb on + strand, within MPMX20_02749 at 2903.882 kb on + strand, within MPMX20_02749 at 2903.908 kb on - strand, within MPMX20_02749 at 2903.936 kb on + strand, within MPMX20_02749 at 2903.944 kb on - strand, within MPMX20_02749 at 2903.987 kb on - strand at 2903.998 kb on - strand at 2904.005 kb on + strand at 2904.062 kb on + strand at 2904.072 kb on + strand at 2904.072 kb on + strand at 2904.072 kb on + strand at 2904.080 kb on - strand at 2904.080 kb on - strand at 2904.080 kb on - strand at 2904.080 kb on - strand at 2904.080 kb on - strand at 2904.080 kb on - strand at 2904.080 kb on - strand at 2904.128 kb on + strand at 2904.138 kb on + strand at 2904.138 kb on + strand at 2904.228 kb on - strand, within MPMX20_02750 at 2904.253 kb on + strand, within MPMX20_02750 at 2904.374 kb on - strand, within MPMX20_02750 at 2904.374 kb on - strand, within MPMX20_02750 at 2904.376 kb on + strand, within MPMX20_02750 at 2904.408 kb on + strand, within MPMX20_02750 at 2904.408 kb on + strand, within MPMX20_02750 at 2904.416 kb on - strand, within MPMX20_02750 at 2904.416 kb on - strand, within MPMX20_02750 at 2904.418 kb on - strand, within MPMX20_02750 at 2904.418 kb on - strand, within MPMX20_02750 at 2904.423 kb on + strand, within MPMX20_02750 at 2904.423 kb on + strand, within MPMX20_02750 at 2904.423 kb on + strand, within MPMX20_02750 at 2904.431 kb on - strand, within MPMX20_02750 at 2904.431 kb on - strand, within MPMX20_02750 at 2904.514 kb on - strand, within MPMX20_02750 at 2904.514 kb on - strand, within MPMX20_02750 at 2904.561 kb on - strand, within MPMX20_02750 at 2904.563 kb on - strand, within MPMX20_02750 at 2904.563 kb on - strand, within MPMX20_02750 at 2904.569 kb on - strand, within MPMX20_02750 at 2904.571 kb on - strand, within MPMX20_02750 at 2904.728 kb on + strand at 2904.736 kb on - strand at 2904.749 kb on + strand at 2904.754 kb on + strand at 2904.757 kb on - strand at 2904.757 kb on - strand at 2904.759 kb on + strand at 2904.759 kb on + strand at 2904.767 kb on - strand at 2904.901 kb on + strand, within MPMX20_02751 at 2904.901 kb on + strand, within MPMX20_02751 at 2904.909 kb on - strand, within MPMX20_02751 at 2904.909 kb on - strand, within MPMX20_02751 at 2904.929 kb on - strand, within MPMX20_02751 at 2904.979 kb on + strand, within MPMX20_02751
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 2,902,752 + MPMX20_02747 0.44 -1.5 2,902,770 - MPMX20_02747 0.46 +1.9 2,902,777 + MPMX20_02747 0.47 -0.5 2,902,779 + MPMX20_02747 0.47 +0.3 2,902,785 - MPMX20_02747 0.48 -0.4 2,902,785 - MPMX20_02747 0.48 -0.0 2,902,800 + MPMX20_02747 0.50 -0.5 2,902,847 - MPMX20_02747 0.55 -1.9 2,902,866 + MPMX20_02747 0.57 -0.3 2,902,866 + MPMX20_02747 0.57 -0.9 2,902,866 + MPMX20_02747 0.57 -0.0 2,902,874 - MPMX20_02747 0.58 +1.0 2,902,874 - MPMX20_02747 0.58 -1.5 2,902,874 - MPMX20_02747 0.58 -0.1 2,902,874 - MPMX20_02747 0.58 +1.5 2,902,876 - MPMX20_02747 0.58 -1.6 2,902,894 + MPMX20_02747 0.60 +0.2 2,902,894 + MPMX20_02747 0.60 +0.3 2,902,955 + MPMX20_02747 0.67 -1.4 2,902,964 + MPMX20_02747 0.68 +0.6 2,902,986 - MPMX20_02747 0.71 -0.8 2,902,986 - MPMX20_02747 0.71 +1.8 2,902,988 - MPMX20_02747 0.71 -1.4 2,902,997 + MPMX20_02747 0.72 -0.8 2,903,064 - MPMX20_02747 0.80 -1.3 2,903,088 - MPMX20_02747 0.83 -0.3 2,903,150 + MPMX20_02747 0.90 -1.3 2,903,159 + +3.2 2,903,169 - +0.5 2,903,169 - -2.1 2,903,209 + -1.5 2,903,214 + -1.5 2,903,214 + -0.0 2,903,214 + -1.9 2,903,217 - -1.3 2,903,217 - +1.4 2,903,222 - -1.3 2,903,222 - -0.0 2,903,222 - +0.7 2,903,227 - +0.7 2,903,399 + MPMX20_02748 0.43 -0.3 2,903,404 + MPMX20_02748 0.44 -1.6 2,903,443 + MPMX20_02748 0.55 -0.2 2,903,443 + MPMX20_02748 0.55 -1.0 2,903,451 - MPMX20_02748 0.57 -1.4 2,903,510 + MPMX20_02748 0.73 -1.8 2,903,510 + MPMX20_02748 0.73 +0.2 2,903,523 + MPMX20_02748 0.76 +0.2 2,903,546 + MPMX20_02748 0.82 +0.7 2,903,554 - MPMX20_02748 0.84 -1.6 2,903,600 + +0.3 2,903,600 + -0.6 2,903,600 + -1.3 2,903,608 - -1.4 2,903,608 - -1.8 2,903,609 - +0.5 2,903,609 - +0.1 2,903,656 - +0.5 2,903,690 + +0.1 2,903,768 + +0.6 2,903,833 - MPMX20_02749 0.36 -1.3 2,903,835 + MPMX20_02749 0.37 -0.0 2,903,835 + MPMX20_02749 0.37 -0.5 2,903,865 + MPMX20_02749 0.50 +0.5 2,903,865 + MPMX20_02749 0.50 +1.2 2,903,882 + MPMX20_02749 0.58 -2.0 2,903,908 - MPMX20_02749 0.69 +0.5 2,903,936 + MPMX20_02749 0.81 +0.2 2,903,944 - MPMX20_02749 0.84 -0.2 2,903,987 - -2.2 2,903,998 - -1.3 2,904,005 + -1.2 2,904,062 + -0.4 2,904,072 + +0.1 2,904,072 + -1.8 2,904,072 + -2.6 2,904,080 - -1.2 2,904,080 - -1.5 2,904,080 - +0.2 2,904,080 - +1.5 2,904,080 - +0.4 2,904,080 - +0.3 2,904,080 - -0.6 2,904,128 + +0.1 2,904,138 + -2.2 2,904,138 + -0.5 2,904,228 - MPMX20_02750 0.21 -0.5 2,904,253 + MPMX20_02750 0.25 +1.1 2,904,374 - MPMX20_02750 0.44 -0.7 2,904,374 - MPMX20_02750 0.44 +0.5 2,904,376 + MPMX20_02750 0.44 -1.0 2,904,408 + MPMX20_02750 0.49 -1.0 2,904,408 + MPMX20_02750 0.49 +0.2 2,904,416 - MPMX20_02750 0.50 -1.0 2,904,416 - MPMX20_02750 0.50 -2.0 2,904,418 - MPMX20_02750 0.51 -2.1 2,904,418 - MPMX20_02750 0.51 -2.2 2,904,423 + MPMX20_02750 0.51 -0.0 2,904,423 + MPMX20_02750 0.51 -0.4 2,904,423 + MPMX20_02750 0.51 -2.9 2,904,431 - MPMX20_02750 0.53 -2.5 2,904,431 - MPMX20_02750 0.53 -1.2 2,904,514 - MPMX20_02750 0.65 -1.4 2,904,514 - MPMX20_02750 0.65 +1.0 2,904,561 - MPMX20_02750 0.73 -1.2 2,904,563 - MPMX20_02750 0.73 +1.0 2,904,563 - MPMX20_02750 0.73 -0.5 2,904,569 - MPMX20_02750 0.74 +3.0 2,904,571 - MPMX20_02750 0.74 -0.8 2,904,728 + -0.7 2,904,736 - -0.9 2,904,749 + -1.0 2,904,754 + -1.3 2,904,757 - -0.5 2,904,757 - -1.0 2,904,759 + -1.7 2,904,759 + -0.8 2,904,767 - -0.9 2,904,901 + MPMX20_02751 0.21 -0.5 2,904,901 + MPMX20_02751 0.21 +1.9 2,904,909 - MPMX20_02751 0.22 -0.3 2,904,909 - MPMX20_02751 0.22 +0.5 2,904,929 - MPMX20_02751 0.25 -1.0 2,904,979 + MPMX20_02751 0.32 -0.3
Or see this region's nucleotide sequence