Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02749

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02747 and MPMX20_02748 are separated by 1 nucleotidesMPMX20_02748 and MPMX20_02749 are separated by 137 nucleotidesMPMX20_02749 and MPMX20_02750 are separated by 109 nucleotidesMPMX20_02750 and MPMX20_02751 are separated by 24 nucleotides MPMX20_02747: MPMX20_02747 - Inner membrane protein YebZ, at 2,902,369 to 2,903,238 _02747 MPMX20_02748: MPMX20_02748 - Protein YobA, at 2,903,240 to 2,903,611 _02748 MPMX20_02749: MPMX20_02749 - DNA polymerase III subunit theta, at 2,903,749 to 2,903,979 _02749 MPMX20_02750: MPMX20_02750 - hypothetical protein, at 2,904,089 to 2,904,739 _02750 MPMX20_02751: MPMX20_02751 - Exodeoxyribonuclease 10, at 2,904,764 to 2,905,426 _02751 Position (kb) 2903 2904Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2902.752 kb on + strand, within MPMX20_02747at 2902.770 kb on - strand, within MPMX20_02747at 2902.777 kb on + strand, within MPMX20_02747at 2902.779 kb on + strand, within MPMX20_02747at 2902.785 kb on - strand, within MPMX20_02747at 2902.785 kb on - strand, within MPMX20_02747at 2902.800 kb on + strand, within MPMX20_02747at 2902.847 kb on - strand, within MPMX20_02747at 2902.866 kb on + strand, within MPMX20_02747at 2902.866 kb on + strand, within MPMX20_02747at 2902.866 kb on + strand, within MPMX20_02747at 2902.874 kb on - strand, within MPMX20_02747at 2902.874 kb on - strand, within MPMX20_02747at 2902.874 kb on - strand, within MPMX20_02747at 2902.874 kb on - strand, within MPMX20_02747at 2902.876 kb on - strand, within MPMX20_02747at 2902.894 kb on + strand, within MPMX20_02747at 2902.894 kb on + strand, within MPMX20_02747at 2902.955 kb on + strand, within MPMX20_02747at 2902.964 kb on + strand, within MPMX20_02747at 2902.986 kb on - strand, within MPMX20_02747at 2902.986 kb on - strand, within MPMX20_02747at 2902.988 kb on - strand, within MPMX20_02747at 2902.997 kb on + strand, within MPMX20_02747at 2903.064 kb on - strand, within MPMX20_02747at 2903.088 kb on - strand, within MPMX20_02747at 2903.150 kb on + strand, within MPMX20_02747at 2903.159 kb on + strandat 2903.169 kb on - strandat 2903.169 kb on - strandat 2903.209 kb on + strandat 2903.214 kb on + strandat 2903.214 kb on + strandat 2903.214 kb on + strandat 2903.217 kb on - strandat 2903.217 kb on - strandat 2903.222 kb on - strandat 2903.222 kb on - strandat 2903.222 kb on - strandat 2903.227 kb on - strandat 2903.399 kb on + strand, within MPMX20_02748at 2903.404 kb on + strand, within MPMX20_02748at 2903.443 kb on + strand, within MPMX20_02748at 2903.443 kb on + strand, within MPMX20_02748at 2903.451 kb on - strand, within MPMX20_02748at 2903.510 kb on + strand, within MPMX20_02748at 2903.510 kb on + strand, within MPMX20_02748at 2903.523 kb on + strand, within MPMX20_02748at 2903.546 kb on + strand, within MPMX20_02748at 2903.554 kb on - strand, within MPMX20_02748at 2903.600 kb on + strandat 2903.600 kb on + strandat 2903.600 kb on + strandat 2903.608 kb on - strandat 2903.608 kb on - strandat 2903.609 kb on - strandat 2903.609 kb on - strandat 2903.656 kb on - strandat 2903.690 kb on + strandat 2903.768 kb on + strandat 2903.833 kb on - strand, within MPMX20_02749at 2903.835 kb on + strand, within MPMX20_02749at 2903.835 kb on + strand, within MPMX20_02749at 2903.865 kb on + strand, within MPMX20_02749at 2903.865 kb on + strand, within MPMX20_02749at 2903.882 kb on + strand, within MPMX20_02749at 2903.908 kb on - strand, within MPMX20_02749at 2903.936 kb on + strand, within MPMX20_02749at 2903.944 kb on - strand, within MPMX20_02749at 2903.987 kb on - strandat 2903.998 kb on - strandat 2904.005 kb on + strandat 2904.062 kb on + strandat 2904.072 kb on + strandat 2904.072 kb on + strandat 2904.072 kb on + strandat 2904.080 kb on - strandat 2904.080 kb on - strandat 2904.080 kb on - strandat 2904.080 kb on - strandat 2904.080 kb on - strandat 2904.080 kb on - strandat 2904.080 kb on - strandat 2904.128 kb on + strandat 2904.138 kb on + strandat 2904.138 kb on + strandat 2904.228 kb on - strand, within MPMX20_02750at 2904.253 kb on + strand, within MPMX20_02750at 2904.374 kb on - strand, within MPMX20_02750at 2904.374 kb on - strand, within MPMX20_02750at 2904.376 kb on + strand, within MPMX20_02750at 2904.408 kb on + strand, within MPMX20_02750at 2904.408 kb on + strand, within MPMX20_02750at 2904.416 kb on - strand, within MPMX20_02750at 2904.416 kb on - strand, within MPMX20_02750at 2904.418 kb on - strand, within MPMX20_02750at 2904.418 kb on - strand, within MPMX20_02750at 2904.423 kb on + strand, within MPMX20_02750at 2904.423 kb on + strand, within MPMX20_02750at 2904.423 kb on + strand, within MPMX20_02750at 2904.431 kb on - strand, within MPMX20_02750at 2904.431 kb on - strand, within MPMX20_02750at 2904.514 kb on - strand, within MPMX20_02750at 2904.514 kb on - strand, within MPMX20_02750at 2904.561 kb on - strand, within MPMX20_02750at 2904.563 kb on - strand, within MPMX20_02750at 2904.563 kb on - strand, within MPMX20_02750at 2904.569 kb on - strand, within MPMX20_02750at 2904.571 kb on - strand, within MPMX20_02750at 2904.728 kb on + strandat 2904.736 kb on - strandat 2904.749 kb on + strandat 2904.754 kb on + strandat 2904.757 kb on - strandat 2904.757 kb on - strandat 2904.759 kb on + strandat 2904.759 kb on + strandat 2904.767 kb on - strandat 2904.901 kb on + strand, within MPMX20_02751at 2904.901 kb on + strand, within MPMX20_02751at 2904.909 kb on - strand, within MPMX20_02751at 2904.909 kb on - strand, within MPMX20_02751at 2904.929 kb on - strand, within MPMX20_02751at 2904.979 kb on + strand, within MPMX20_02751

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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2,902,752 + MPMX20_02747 0.44 -1.5
2,902,770 - MPMX20_02747 0.46 +1.9
2,902,777 + MPMX20_02747 0.47 -0.5
2,902,779 + MPMX20_02747 0.47 +0.3
2,902,785 - MPMX20_02747 0.48 -0.4
2,902,785 - MPMX20_02747 0.48 -0.0
2,902,800 + MPMX20_02747 0.50 -0.5
2,902,847 - MPMX20_02747 0.55 -1.9
2,902,866 + MPMX20_02747 0.57 -0.3
2,902,866 + MPMX20_02747 0.57 -0.9
2,902,866 + MPMX20_02747 0.57 -0.0
2,902,874 - MPMX20_02747 0.58 +1.0
2,902,874 - MPMX20_02747 0.58 -1.5
2,902,874 - MPMX20_02747 0.58 -0.1
2,902,874 - MPMX20_02747 0.58 +1.5
2,902,876 - MPMX20_02747 0.58 -1.6
2,902,894 + MPMX20_02747 0.60 +0.2
2,902,894 + MPMX20_02747 0.60 +0.3
2,902,955 + MPMX20_02747 0.67 -1.4
2,902,964 + MPMX20_02747 0.68 +0.6
2,902,986 - MPMX20_02747 0.71 -0.8
2,902,986 - MPMX20_02747 0.71 +1.8
2,902,988 - MPMX20_02747 0.71 -1.4
2,902,997 + MPMX20_02747 0.72 -0.8
2,903,064 - MPMX20_02747 0.80 -1.3
2,903,088 - MPMX20_02747 0.83 -0.3
2,903,150 + MPMX20_02747 0.90 -1.3
2,903,159 + +3.2
2,903,169 - +0.5
2,903,169 - -2.1
2,903,209 + -1.5
2,903,214 + -1.5
2,903,214 + -0.0
2,903,214 + -1.9
2,903,217 - -1.3
2,903,217 - +1.4
2,903,222 - -1.3
2,903,222 - -0.0
2,903,222 - +0.7
2,903,227 - +0.7
2,903,399 + MPMX20_02748 0.43 -0.3
2,903,404 + MPMX20_02748 0.44 -1.6
2,903,443 + MPMX20_02748 0.55 -0.2
2,903,443 + MPMX20_02748 0.55 -1.0
2,903,451 - MPMX20_02748 0.57 -1.4
2,903,510 + MPMX20_02748 0.73 -1.8
2,903,510 + MPMX20_02748 0.73 +0.2
2,903,523 + MPMX20_02748 0.76 +0.2
2,903,546 + MPMX20_02748 0.82 +0.7
2,903,554 - MPMX20_02748 0.84 -1.6
2,903,600 + +0.3
2,903,600 + -0.6
2,903,600 + -1.3
2,903,608 - -1.4
2,903,608 - -1.8
2,903,609 - +0.5
2,903,609 - +0.1
2,903,656 - +0.5
2,903,690 + +0.1
2,903,768 + +0.6
2,903,833 - MPMX20_02749 0.36 -1.3
2,903,835 + MPMX20_02749 0.37 -0.0
2,903,835 + MPMX20_02749 0.37 -0.5
2,903,865 + MPMX20_02749 0.50 +0.5
2,903,865 + MPMX20_02749 0.50 +1.2
2,903,882 + MPMX20_02749 0.58 -2.0
2,903,908 - MPMX20_02749 0.69 +0.5
2,903,936 + MPMX20_02749 0.81 +0.2
2,903,944 - MPMX20_02749 0.84 -0.2
2,903,987 - -2.2
2,903,998 - -1.3
2,904,005 + -1.2
2,904,062 + -0.4
2,904,072 + +0.1
2,904,072 + -1.8
2,904,072 + -2.6
2,904,080 - -1.2
2,904,080 - -1.5
2,904,080 - +0.2
2,904,080 - +1.5
2,904,080 - +0.4
2,904,080 - +0.3
2,904,080 - -0.6
2,904,128 + +0.1
2,904,138 + -2.2
2,904,138 + -0.5
2,904,228 - MPMX20_02750 0.21 -0.5
2,904,253 + MPMX20_02750 0.25 +1.1
2,904,374 - MPMX20_02750 0.44 -0.7
2,904,374 - MPMX20_02750 0.44 +0.5
2,904,376 + MPMX20_02750 0.44 -1.0
2,904,408 + MPMX20_02750 0.49 -1.0
2,904,408 + MPMX20_02750 0.49 +0.2
2,904,416 - MPMX20_02750 0.50 -1.0
2,904,416 - MPMX20_02750 0.50 -2.0
2,904,418 - MPMX20_02750 0.51 -2.1
2,904,418 - MPMX20_02750 0.51 -2.2
2,904,423 + MPMX20_02750 0.51 -0.0
2,904,423 + MPMX20_02750 0.51 -0.4
2,904,423 + MPMX20_02750 0.51 -2.9
2,904,431 - MPMX20_02750 0.53 -2.5
2,904,431 - MPMX20_02750 0.53 -1.2
2,904,514 - MPMX20_02750 0.65 -1.4
2,904,514 - MPMX20_02750 0.65 +1.0
2,904,561 - MPMX20_02750 0.73 -1.2
2,904,563 - MPMX20_02750 0.73 +1.0
2,904,563 - MPMX20_02750 0.73 -0.5
2,904,569 - MPMX20_02750 0.74 +3.0
2,904,571 - MPMX20_02750 0.74 -0.8
2,904,728 + -0.7
2,904,736 - -0.9
2,904,749 + -1.0
2,904,754 + -1.3
2,904,757 - -0.5
2,904,757 - -1.0
2,904,759 + -1.7
2,904,759 + -0.8
2,904,767 - -0.9
2,904,901 + MPMX20_02751 0.21 -0.5
2,904,901 + MPMX20_02751 0.21 +1.9
2,904,909 - MPMX20_02751 0.22 -0.3
2,904,909 - MPMX20_02751 0.22 +0.5
2,904,929 - MPMX20_02751 0.25 -1.0
2,904,979 + MPMX20_02751 0.32 -0.3

Or see this region's nucleotide sequence