Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02594 and MPMX20_02595 are separated by 21 nucleotides MPMX20_02595 and MPMX20_02596 are separated by 48 nucleotides MPMX20_02596 and MPMX20_02597 are separated by 157 nucleotides MPMX20_02597 and MPMX20_02598 are separated by 35 nucleotides MPMX20_02598 and MPMX20_02599 are separated by 61 nucleotides MPMX20_02599 and MPMX20_02600 are separated by 107 nucleotides
MPMX20_02594: MPMX20_02594 - putative NTE family protein, at 2,732,387 to 2,733,328
_02594
MPMX20_02595: MPMX20_02595 - hypothetical protein, at 2,733,350 to 2,733,862
_02595
MPMX20_02596: MPMX20_02596 - Formyltetrahydrofolate deformylase, at 2,733,911 to 2,734,753
_02596
MPMX20_02597: MPMX20_02597 - tRNA-Tyr, at 2,734,911 to 2,734,995
_02597
MPMX20_02598: MPMX20_02598 - tRNA-Tyr, at 2,735,031 to 2,735,115
_02598
MPMX20_02599: MPMX20_02599 - HTH-type transcriptional regulator LrpC, at 2,735,177 to 2,735,620
_02599
MPMX20_02600: MPMX20_02600 - hypothetical protein, at 2,735,728 to 2,736,624
_02600
Position (kb)
2733
2734
2735 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2732.937 kb on + strand, within MPMX20_02594 at 2732.937 kb on + strand, within MPMX20_02594 at 2732.937 kb on + strand, within MPMX20_02594 at 2732.945 kb on - strand, within MPMX20_02594 at 2732.945 kb on - strand, within MPMX20_02594 at 2732.945 kb on - strand, within MPMX20_02594 at 2732.945 kb on - strand, within MPMX20_02594 at 2732.945 kb on - strand, within MPMX20_02594 at 2732.945 kb on - strand, within MPMX20_02594 at 2732.945 kb on - strand, within MPMX20_02594 at 2732.956 kb on - strand, within MPMX20_02594 at 2732.988 kb on - strand, within MPMX20_02594 at 2733.014 kb on - strand, within MPMX20_02594 at 2733.033 kb on - strand, within MPMX20_02594 at 2733.046 kb on - strand, within MPMX20_02594 at 2733.147 kb on - strand, within MPMX20_02594 at 2733.149 kb on + strand, within MPMX20_02594 at 2733.157 kb on - strand, within MPMX20_02594 at 2733.173 kb on + strand, within MPMX20_02594 at 2733.173 kb on + strand, within MPMX20_02594 at 2733.181 kb on - strand, within MPMX20_02594 at 2733.181 kb on - strand, within MPMX20_02594 at 2733.198 kb on - strand, within MPMX20_02594 at 2733.205 kb on + strand, within MPMX20_02594 at 2733.239 kb on + strand at 2733.239 kb on + strand at 2733.247 kb on - strand at 2733.258 kb on - strand at 2733.281 kb on - strand at 2733.281 kb on - strand at 2733.290 kb on - strand at 2733.295 kb on - strand at 2733.297 kb on + strand at 2733.297 kb on + strand at 2733.305 kb on - strand at 2733.305 kb on - strand at 2733.321 kb on - strand at 2733.329 kb on + strand at 2733.342 kb on + strand at 2733.353 kb on + strand at 2733.361 kb on - strand at 2733.420 kb on - strand, within MPMX20_02595 at 2733.420 kb on - strand, within MPMX20_02595 at 2733.424 kb on + strand, within MPMX20_02595 at 2733.444 kb on - strand, within MPMX20_02595 at 2733.478 kb on + strand, within MPMX20_02595 at 2733.483 kb on + strand, within MPMX20_02595 at 2733.486 kb on - strand, within MPMX20_02595 at 2733.491 kb on - strand, within MPMX20_02595 at 2733.497 kb on + strand, within MPMX20_02595 at 2733.500 kb on - strand, within MPMX20_02595 at 2733.507 kb on - strand, within MPMX20_02595 at 2733.507 kb on - strand, within MPMX20_02595 at 2733.515 kb on - strand, within MPMX20_02595 at 2733.522 kb on - strand, within MPMX20_02595 at 2733.550 kb on + strand, within MPMX20_02595 at 2733.603 kb on - strand, within MPMX20_02595 at 2733.629 kb on - strand, within MPMX20_02595 at 2733.633 kb on + strand, within MPMX20_02595 at 2733.633 kb on + strand, within MPMX20_02595 at 2733.633 kb on + strand, within MPMX20_02595 at 2733.633 kb on + strand, within MPMX20_02595 at 2733.633 kb on + strand, within MPMX20_02595 at 2733.635 kb on - strand, within MPMX20_02595 at 2733.641 kb on - strand, within MPMX20_02595 at 2733.641 kb on - strand, within MPMX20_02595 at 2733.641 kb on - strand, within MPMX20_02595 at 2733.641 kb on - strand, within MPMX20_02595 at 2733.641 kb on - strand, within MPMX20_02595 at 2733.671 kb on + strand, within MPMX20_02595 at 2733.671 kb on + strand, within MPMX20_02595 at 2733.671 kb on + strand, within MPMX20_02595 at 2733.671 kb on + strand, within MPMX20_02595 at 2733.677 kb on + strand, within MPMX20_02595 at 2733.677 kb on + strand, within MPMX20_02595 at 2733.679 kb on - strand, within MPMX20_02595 at 2733.679 kb on - strand, within MPMX20_02595 at 2733.712 kb on + strand, within MPMX20_02595 at 2733.712 kb on + strand, within MPMX20_02595 at 2733.712 kb on + strand, within MPMX20_02595 at 2733.718 kb on + strand, within MPMX20_02595 at 2733.726 kb on - strand, within MPMX20_02595 at 2733.788 kb on + strand, within MPMX20_02595 at 2733.811 kb on + strand at 2733.817 kb on + strand at 2733.819 kb on - strand at 2733.880 kb on - strand at 2733.927 kb on + strand at 2733.927 kb on + strand at 2733.933 kb on - strand at 2733.943 kb on + strand at 2733.951 kb on - strand at 2733.951 kb on - strand at 2733.996 kb on + strand, within MPMX20_02596 at 2734.004 kb on + strand, within MPMX20_02596 at 2734.036 kb on + strand, within MPMX20_02596 at 2734.039 kb on - strand, within MPMX20_02596 at 2734.061 kb on - strand, within MPMX20_02596 at 2734.070 kb on + strand, within MPMX20_02596 at 2734.089 kb on + strand, within MPMX20_02596 at 2734.123 kb on + strand, within MPMX20_02596 at 2734.123 kb on + strand, within MPMX20_02596 at 2734.131 kb on - strand, within MPMX20_02596 at 2734.131 kb on - strand, within MPMX20_02596 at 2734.132 kb on - strand, within MPMX20_02596 at 2734.157 kb on + strand, within MPMX20_02596 at 2734.200 kb on + strand, within MPMX20_02596 at 2734.200 kb on + strand, within MPMX20_02596 at 2734.219 kb on - strand, within MPMX20_02596 at 2734.244 kb on + strand, within MPMX20_02596 at 2734.299 kb on - strand, within MPMX20_02596 at 2734.299 kb on - strand, within MPMX20_02596 at 2734.329 kb on - strand, within MPMX20_02596 at 2734.334 kb on + strand, within MPMX20_02596 at 2734.334 kb on + strand, within MPMX20_02596 at 2734.334 kb on + strand, within MPMX20_02596 at 2734.334 kb on + strand, within MPMX20_02596 at 2734.334 kb on + strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.366 kb on + strand, within MPMX20_02596 at 2734.432 kb on - strand, within MPMX20_02596 at 2734.432 kb on - strand, within MPMX20_02596 at 2734.493 kb on + strand, within MPMX20_02596 at 2734.511 kb on - strand, within MPMX20_02596 at 2734.525 kb on - strand, within MPMX20_02596 at 2734.622 kb on + strand, within MPMX20_02596 at 2734.630 kb on - strand, within MPMX20_02596 at 2734.630 kb on - strand, within MPMX20_02596 at 2734.635 kb on - strand, within MPMX20_02596 at 2734.684 kb on - strand at 2734.686 kb on + strand at 2734.686 kb on + strand at 2734.686 kb on + strand at 2734.698 kb on + strand at 2734.778 kb on + strand at 2734.785 kb on + strand at 2734.870 kb on + strand at 2734.899 kb on + strand at 2734.907 kb on - strand at 2734.928 kb on + strand, within MPMX20_02597 at 2734.928 kb on + strand, within MPMX20_02597 at 2734.928 kb on + strand, within MPMX20_02597 at 2734.928 kb on + strand, within MPMX20_02597 at 2734.936 kb on - strand, within MPMX20_02597 at 2735.056 kb on - strand, within MPMX20_02598 at 2735.056 kb on - strand, within MPMX20_02598 at 2735.056 kb on - strand, within MPMX20_02598 at 2735.056 kb on - strand, within MPMX20_02598 at 2735.188 kb on - strand at 2735.192 kb on - strand at 2735.239 kb on - strand, within MPMX20_02599 at 2735.270 kb on + strand, within MPMX20_02599 at 2735.298 kb on - strand, within MPMX20_02599 at 2735.320 kb on - strand, within MPMX20_02599 at 2735.389 kb on - strand, within MPMX20_02599 at 2735.430 kb on - strand, within MPMX20_02599 at 2735.432 kb on - strand, within MPMX20_02599 at 2735.437 kb on - strand, within MPMX20_02599 at 2735.452 kb on - strand, within MPMX20_02599 at 2735.463 kb on - strand, within MPMX20_02599 at 2735.463 kb on - strand, within MPMX20_02599 at 2735.473 kb on + strand, within MPMX20_02599 at 2735.490 kb on + strand, within MPMX20_02599 at 2735.508 kb on + strand, within MPMX20_02599 at 2735.510 kb on + strand, within MPMX20_02599 at 2735.511 kb on - strand, within MPMX20_02599 at 2735.511 kb on - strand, within MPMX20_02599 at 2735.511 kb on - strand, within MPMX20_02599 at 2735.519 kb on + strand, within MPMX20_02599 at 2735.553 kb on - strand, within MPMX20_02599 at 2735.565 kb on + strand, within MPMX20_02599 at 2735.573 kb on - strand, within MPMX20_02599 at 2735.579 kb on + strand at 2735.660 kb on - strand at 2735.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 2,732,937 + MPMX20_02594 0.58 -0.9 2,732,937 + MPMX20_02594 0.58 -2.1 2,732,937 + MPMX20_02594 0.58 -1.6 2,732,945 - MPMX20_02594 0.59 -0.3 2,732,945 - MPMX20_02594 0.59 -0.9 2,732,945 - MPMX20_02594 0.59 -0.3 2,732,945 - MPMX20_02594 0.59 +1.1 2,732,945 - MPMX20_02594 0.59 -1.1 2,732,945 - MPMX20_02594 0.59 -2.6 2,732,945 - MPMX20_02594 0.59 -3.0 2,732,956 - MPMX20_02594 0.60 -0.6 2,732,988 - MPMX20_02594 0.64 +0.2 2,733,014 - MPMX20_02594 0.67 -1.9 2,733,033 - MPMX20_02594 0.69 +1.6 2,733,046 - MPMX20_02594 0.70 -0.9 2,733,147 - MPMX20_02594 0.81 -1.5 2,733,149 + MPMX20_02594 0.81 -2.0 2,733,157 - MPMX20_02594 0.82 -1.7 2,733,173 + MPMX20_02594 0.83 +0.2 2,733,173 + MPMX20_02594 0.83 +0.1 2,733,181 - MPMX20_02594 0.84 +1.6 2,733,181 - MPMX20_02594 0.84 +0.7 2,733,198 - MPMX20_02594 0.86 -2.1 2,733,205 + MPMX20_02594 0.87 -0.6 2,733,239 + +0.0 2,733,239 + -1.1 2,733,247 - -0.6 2,733,258 - -0.4 2,733,281 - -0.4 2,733,281 - -0.3 2,733,290 - -0.7 2,733,295 - -2.1 2,733,297 + +0.2 2,733,297 + -1.7 2,733,305 - +0.0 2,733,305 - +0.6 2,733,321 - +2.4 2,733,329 + -0.5 2,733,342 + -1.6 2,733,353 + -1.2 2,733,361 - -0.2 2,733,420 - MPMX20_02595 0.14 +0.6 2,733,420 - MPMX20_02595 0.14 -0.6 2,733,424 + MPMX20_02595 0.14 -2.5 2,733,444 - MPMX20_02595 0.18 +0.6 2,733,478 + MPMX20_02595 0.25 +0.1 2,733,483 + MPMX20_02595 0.26 -1.0 2,733,486 - MPMX20_02595 0.27 +3.1 2,733,491 - MPMX20_02595 0.27 +0.2 2,733,497 + MPMX20_02595 0.29 -1.4 2,733,500 - MPMX20_02595 0.29 +2.6 2,733,507 - MPMX20_02595 0.31 -2.3 2,733,507 - MPMX20_02595 0.31 +1.5 2,733,515 - MPMX20_02595 0.32 -1.0 2,733,522 - MPMX20_02595 0.34 +1.7 2,733,550 + MPMX20_02595 0.39 -0.8 2,733,603 - MPMX20_02595 0.49 +2.6 2,733,629 - MPMX20_02595 0.54 -3.1 2,733,633 + MPMX20_02595 0.55 -0.6 2,733,633 + MPMX20_02595 0.55 -0.6 2,733,633 + MPMX20_02595 0.55 -0.6 2,733,633 + MPMX20_02595 0.55 -0.0 2,733,633 + MPMX20_02595 0.55 +0.4 2,733,635 - MPMX20_02595 0.56 -0.6 2,733,641 - MPMX20_02595 0.57 -0.7 2,733,641 - MPMX20_02595 0.57 +0.2 2,733,641 - MPMX20_02595 0.57 -1.9 2,733,641 - MPMX20_02595 0.57 -1.2 2,733,641 - MPMX20_02595 0.57 -0.2 2,733,671 + MPMX20_02595 0.63 -0.2 2,733,671 + MPMX20_02595 0.63 -0.3 2,733,671 + MPMX20_02595 0.63 -2.1 2,733,671 + MPMX20_02595 0.63 -0.1 2,733,677 + MPMX20_02595 0.64 -1.3 2,733,677 + MPMX20_02595 0.64 -0.8 2,733,679 - MPMX20_02595 0.64 -1.9 2,733,679 - MPMX20_02595 0.64 -1.6 2,733,712 + MPMX20_02595 0.71 -0.1 2,733,712 + MPMX20_02595 0.71 -0.4 2,733,712 + MPMX20_02595 0.71 -1.2 2,733,718 + MPMX20_02595 0.72 -0.6 2,733,726 - MPMX20_02595 0.73 +0.2 2,733,788 + MPMX20_02595 0.85 -1.5 2,733,811 + +0.8 2,733,817 + -1.0 2,733,819 - -1.1 2,733,880 - -2.3 2,733,927 + -2.4 2,733,927 + +0.6 2,733,933 - -1.0 2,733,943 + -2.0 2,733,951 - -1.1 2,733,951 - -1.8 2,733,996 + MPMX20_02596 0.10 +0.4 2,734,004 + MPMX20_02596 0.11 +0.7 2,734,036 + MPMX20_02596 0.15 -1.1 2,734,039 - MPMX20_02596 0.15 -3.0 2,734,061 - MPMX20_02596 0.18 -0.6 2,734,070 + MPMX20_02596 0.19 +0.6 2,734,089 + MPMX20_02596 0.21 -1.0 2,734,123 + MPMX20_02596 0.25 -1.5 2,734,123 + MPMX20_02596 0.25 -2.8 2,734,131 - MPMX20_02596 0.26 +1.2 2,734,131 - MPMX20_02596 0.26 -0.9 2,734,132 - MPMX20_02596 0.26 -2.2 2,734,157 + MPMX20_02596 0.29 -2.7 2,734,200 + MPMX20_02596 0.34 -0.4 2,734,200 + MPMX20_02596 0.34 -1.0 2,734,219 - MPMX20_02596 0.37 -3.0 2,734,244 + MPMX20_02596 0.40 -2.9 2,734,299 - MPMX20_02596 0.46 -2.4 2,734,299 - MPMX20_02596 0.46 +2.6 2,734,329 - MPMX20_02596 0.50 -0.2 2,734,334 + MPMX20_02596 0.50 -3.5 2,734,334 + MPMX20_02596 0.50 -1.0 2,734,334 + MPMX20_02596 0.50 -0.1 2,734,334 + MPMX20_02596 0.50 +0.2 2,734,334 + MPMX20_02596 0.50 -2.4 2,734,342 - MPMX20_02596 0.51 -3.3 2,734,342 - MPMX20_02596 0.51 -1.5 2,734,342 - MPMX20_02596 0.51 -2.4 2,734,342 - MPMX20_02596 0.51 -2.1 2,734,342 - MPMX20_02596 0.51 -1.8 2,734,342 - MPMX20_02596 0.51 -0.8 2,734,342 - MPMX20_02596 0.51 -3.5 2,734,342 - MPMX20_02596 0.51 -2.6 2,734,342 - MPMX20_02596 0.51 -1.5 2,734,342 - MPMX20_02596 0.51 +1.0 2,734,366 + MPMX20_02596 0.54 -2.8 2,734,432 - MPMX20_02596 0.62 +0.2 2,734,432 - MPMX20_02596 0.62 -0.2 2,734,493 + MPMX20_02596 0.69 -2.1 2,734,511 - MPMX20_02596 0.71 -3.2 2,734,525 - MPMX20_02596 0.73 -1.0 2,734,622 + MPMX20_02596 0.84 -1.0 2,734,630 - MPMX20_02596 0.85 -2.2 2,734,630 - MPMX20_02596 0.85 -1.2 2,734,635 - MPMX20_02596 0.86 -1.4 2,734,684 - -2.5 2,734,686 + -0.0 2,734,686 + -2.4 2,734,686 + -2.4 2,734,698 + -3.2 2,734,778 + +0.2 2,734,785 + +0.2 2,734,870 + +0.2 2,734,899 + -1.0 2,734,907 - -0.1 2,734,928 + MPMX20_02597 0.20 -2.9 2,734,928 + MPMX20_02597 0.20 -0.8 2,734,928 + MPMX20_02597 0.20 +1.6 2,734,928 + MPMX20_02597 0.20 -3.8 2,734,936 - MPMX20_02597 0.29 -0.7 2,735,056 - MPMX20_02598 0.29 -1.1 2,735,056 - MPMX20_02598 0.29 -0.5 2,735,056 - MPMX20_02598 0.29 +0.1 2,735,056 - MPMX20_02598 0.29 -0.2 2,735,188 - -1.1 2,735,192 - +1.6 2,735,239 - MPMX20_02599 0.14 +1.0 2,735,270 + MPMX20_02599 0.21 -0.2 2,735,298 - MPMX20_02599 0.27 -0.6 2,735,320 - MPMX20_02599 0.32 -2.2 2,735,389 - MPMX20_02599 0.48 -0.1 2,735,430 - MPMX20_02599 0.57 -2.3 2,735,432 - MPMX20_02599 0.57 -2.8 2,735,437 - MPMX20_02599 0.59 -0.0 2,735,452 - MPMX20_02599 0.62 -1.1 2,735,463 - MPMX20_02599 0.64 -2.2 2,735,463 - MPMX20_02599 0.64 -1.5 2,735,473 + MPMX20_02599 0.67 +0.7 2,735,490 + MPMX20_02599 0.70 -1.8 2,735,508 + MPMX20_02599 0.75 -0.7 2,735,510 + MPMX20_02599 0.75 -1.0 2,735,511 - MPMX20_02599 0.75 -2.1 2,735,511 - MPMX20_02599 0.75 -0.0 2,735,511 - MPMX20_02599 0.75 -0.8 2,735,519 + MPMX20_02599 0.77 -1.3 2,735,553 - MPMX20_02599 0.85 +0.4 2,735,565 + MPMX20_02599 0.87 +0.6 2,735,573 - MPMX20_02599 0.89 +0.6 2,735,579 + +0.3 2,735,660 - +2.3 2,735,661 - +1.4
Or see this region's nucleotide sequence