Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02392 and MPMX20_02393 are separated by 160 nucleotides MPMX20_02393 and MPMX20_02394 are separated by 43 nucleotides MPMX20_02394 and MPMX20_02395 are separated by 37 nucleotides MPMX20_02395 and MPMX20_02396 are separated by 39 nucleotides
MPMX20_02392: MPMX20_02392 - Elongation factor G, at 2,524,703 to 2,526,802
_02392
MPMX20_02393: MPMX20_02393 - hypothetical protein, at 2,526,963 to 2,527,262
_02393
MPMX20_02394: MPMX20_02394 - Tautomerase PptA, at 2,527,306 to 2,527,536
_02394
MPMX20_02395: MPMX20_02395 - Glutathione S-transferase GST-6.0, at 2,527,574 to 2,528,191
_02395
MPMX20_02396: MPMX20_02396 - hypothetical protein, at 2,528,231 to 2,529,118
_02396
Position (kb)
2526
2527
2528 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2526.078 kb on - strand, within MPMX20_02392 at 2526.106 kb on + strand, within MPMX20_02392 at 2526.162 kb on + strand, within MPMX20_02392 at 2526.162 kb on + strand, within MPMX20_02392 at 2526.187 kb on + strand, within MPMX20_02392 at 2526.200 kb on + strand, within MPMX20_02392 at 2526.202 kb on - strand, within MPMX20_02392 at 2526.202 kb on - strand, within MPMX20_02392 at 2526.214 kb on - strand, within MPMX20_02392 at 2526.219 kb on - strand, within MPMX20_02392 at 2526.219 kb on - strand, within MPMX20_02392 at 2526.274 kb on + strand, within MPMX20_02392 at 2526.282 kb on - strand, within MPMX20_02392 at 2526.333 kb on + strand, within MPMX20_02392 at 2526.361 kb on - strand, within MPMX20_02392 at 2526.415 kb on + strand, within MPMX20_02392 at 2526.429 kb on + strand, within MPMX20_02392 at 2526.429 kb on + strand, within MPMX20_02392 at 2526.429 kb on + strand, within MPMX20_02392 at 2526.429 kb on + strand, within MPMX20_02392 at 2526.429 kb on + strand, within MPMX20_02392 at 2526.458 kb on - strand, within MPMX20_02392 at 2526.459 kb on + strand, within MPMX20_02392 at 2526.461 kb on + strand, within MPMX20_02392 at 2526.461 kb on + strand, within MPMX20_02392 at 2526.461 kb on + strand, within MPMX20_02392 at 2526.461 kb on + strand, within MPMX20_02392 at 2526.461 kb on + strand, within MPMX20_02392 at 2526.467 kb on + strand, within MPMX20_02392 at 2526.469 kb on - strand, within MPMX20_02392 at 2526.469 kb on - strand, within MPMX20_02392 at 2526.469 kb on - strand, within MPMX20_02392 at 2526.479 kb on + strand, within MPMX20_02392 at 2526.500 kb on - strand, within MPMX20_02392 at 2526.523 kb on - strand, within MPMX20_02392 at 2526.529 kb on + strand, within MPMX20_02392 at 2526.562 kb on + strand, within MPMX20_02392 at 2526.562 kb on + strand, within MPMX20_02392 at 2526.562 kb on + strand, within MPMX20_02392 at 2526.570 kb on - strand, within MPMX20_02392 at 2526.570 kb on - strand, within MPMX20_02392 at 2526.575 kb on + strand, within MPMX20_02392 at 2526.575 kb on + strand, within MPMX20_02392 at 2526.577 kb on - strand, within MPMX20_02392 at 2526.583 kb on - strand, within MPMX20_02392 at 2526.591 kb on + strand, within MPMX20_02392 at 2526.611 kb on + strand at 2526.612 kb on - strand at 2526.619 kb on - strand at 2526.640 kb on + strand at 2526.668 kb on + strand at 2526.676 kb on - strand at 2526.693 kb on - strand at 2526.718 kb on + strand at 2526.721 kb on + strand at 2526.726 kb on - strand at 2526.786 kb on + strand at 2526.823 kb on - strand at 2526.825 kb on - strand at 2526.825 kb on - strand at 2526.827 kb on + strand at 2526.830 kb on - strand at 2526.977 kb on + strand at 2526.985 kb on - strand at 2526.985 kb on - strand at 2527.076 kb on + strand, within MPMX20_02393 at 2527.084 kb on - strand, within MPMX20_02393 at 2527.303 kb on + strand at 2527.364 kb on + strand, within MPMX20_02394 at 2527.364 kb on + strand, within MPMX20_02394 at 2527.369 kb on + strand, within MPMX20_02394 at 2527.369 kb on + strand, within MPMX20_02394 at 2527.372 kb on - strand, within MPMX20_02394 at 2527.372 kb on - strand, within MPMX20_02394 at 2527.377 kb on - strand, within MPMX20_02394 at 2527.424 kb on + strand, within MPMX20_02394 at 2527.433 kb on - strand, within MPMX20_02394 at 2527.435 kb on + strand, within MPMX20_02394 at 2527.435 kb on + strand, within MPMX20_02394 at 2527.443 kb on - strand, within MPMX20_02394 at 2527.571 kb on - strand at 2527.593 kb on + strand at 2527.684 kb on + strand, within MPMX20_02395 at 2527.684 kb on + strand, within MPMX20_02395 at 2527.684 kb on + strand, within MPMX20_02395 at 2527.692 kb on - strand, within MPMX20_02395 at 2527.692 kb on - strand, within MPMX20_02395 at 2527.692 kb on - strand, within MPMX20_02395 at 2527.694 kb on - strand, within MPMX20_02395 at 2527.704 kb on - strand, within MPMX20_02395 at 2527.755 kb on + strand, within MPMX20_02395 at 2527.755 kb on + strand, within MPMX20_02395 at 2527.755 kb on + strand, within MPMX20_02395 at 2527.758 kb on - strand, within MPMX20_02395 at 2527.763 kb on - strand, within MPMX20_02395 at 2527.763 kb on - strand, within MPMX20_02395 at 2527.798 kb on + strand, within MPMX20_02395 at 2527.854 kb on - strand, within MPMX20_02395 at 2527.865 kb on + strand, within MPMX20_02395 at 2527.956 kb on + strand, within MPMX20_02395 at 2527.964 kb on + strand, within MPMX20_02395 at 2527.972 kb on - strand, within MPMX20_02395 at 2528.003 kb on + strand, within MPMX20_02395 at 2528.066 kb on - strand, within MPMX20_02395 at 2528.086 kb on + strand, within MPMX20_02395 at 2528.094 kb on - strand, within MPMX20_02395 at 2528.113 kb on + strand, within MPMX20_02395 at 2528.113 kb on + strand, within MPMX20_02395 at 2528.158 kb on + strand at 2528.227 kb on - strand at 2528.230 kb on + strand at 2528.242 kb on + strand at 2528.250 kb on - strand at 2528.261 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 2,526,078 - MPMX20_02392 0.65 +1.5 2,526,106 + MPMX20_02392 0.67 +0.1 2,526,162 + MPMX20_02392 0.69 -0.2 2,526,162 + MPMX20_02392 0.69 +0.7 2,526,187 + MPMX20_02392 0.71 +0.7 2,526,200 + MPMX20_02392 0.71 -1.1 2,526,202 - MPMX20_02392 0.71 -1.1 2,526,202 - MPMX20_02392 0.71 -1.3 2,526,214 - MPMX20_02392 0.72 +0.5 2,526,219 - MPMX20_02392 0.72 +0.6 2,526,219 - MPMX20_02392 0.72 -0.7 2,526,274 + MPMX20_02392 0.75 -0.6 2,526,282 - MPMX20_02392 0.75 +0.1 2,526,333 + MPMX20_02392 0.78 -1.9 2,526,361 - MPMX20_02392 0.79 -2.4 2,526,415 + MPMX20_02392 0.82 +1.1 2,526,429 + MPMX20_02392 0.82 -2.2 2,526,429 + MPMX20_02392 0.82 -0.8 2,526,429 + MPMX20_02392 0.82 +0.6 2,526,429 + MPMX20_02392 0.82 +0.2 2,526,429 + MPMX20_02392 0.82 +0.3 2,526,458 - MPMX20_02392 0.84 +0.0 2,526,459 + MPMX20_02392 0.84 +0.8 2,526,461 + MPMX20_02392 0.84 -0.2 2,526,461 + MPMX20_02392 0.84 -1.1 2,526,461 + MPMX20_02392 0.84 +1.3 2,526,461 + MPMX20_02392 0.84 -0.4 2,526,461 + MPMX20_02392 0.84 -1.0 2,526,467 + MPMX20_02392 0.84 -0.4 2,526,469 - MPMX20_02392 0.84 -0.6 2,526,469 - MPMX20_02392 0.84 -2.5 2,526,469 - MPMX20_02392 0.84 -1.2 2,526,479 + MPMX20_02392 0.85 -1.9 2,526,500 - MPMX20_02392 0.86 -2.3 2,526,523 - MPMX20_02392 0.87 -2.2 2,526,529 + MPMX20_02392 0.87 +0.8 2,526,562 + MPMX20_02392 0.89 -1.3 2,526,562 + MPMX20_02392 0.89 +0.2 2,526,562 + MPMX20_02392 0.89 +1.0 2,526,570 - MPMX20_02392 0.89 -1.2 2,526,570 - MPMX20_02392 0.89 +0.6 2,526,575 + MPMX20_02392 0.89 -0.8 2,526,575 + MPMX20_02392 0.89 +1.8 2,526,577 - MPMX20_02392 0.89 -0.5 2,526,583 - MPMX20_02392 0.90 -2.5 2,526,591 + MPMX20_02392 0.90 +0.3 2,526,611 + -0.7 2,526,612 - -0.1 2,526,619 - +0.3 2,526,640 + -1.5 2,526,668 + -1.3 2,526,676 - +1.0 2,526,693 - -1.4 2,526,718 + +0.4 2,526,721 + -1.6 2,526,726 - +0.2 2,526,786 + -1.0 2,526,823 - +1.5 2,526,825 - +1.1 2,526,825 - +0.4 2,526,827 + +0.3 2,526,830 - +0.4 2,526,977 + -0.4 2,526,985 - -1.2 2,526,985 - -0.2 2,527,076 + MPMX20_02393 0.38 -0.4 2,527,084 - MPMX20_02393 0.40 +0.3 2,527,303 + +0.0 2,527,364 + MPMX20_02394 0.25 +1.0 2,527,364 + MPMX20_02394 0.25 -1.7 2,527,369 + MPMX20_02394 0.27 -0.2 2,527,369 + MPMX20_02394 0.27 -1.5 2,527,372 - MPMX20_02394 0.29 +0.3 2,527,372 - MPMX20_02394 0.29 -0.6 2,527,377 - MPMX20_02394 0.31 -0.6 2,527,424 + MPMX20_02394 0.51 +0.6 2,527,433 - MPMX20_02394 0.55 -2.1 2,527,435 + MPMX20_02394 0.56 -1.1 2,527,435 + MPMX20_02394 0.56 -0.9 2,527,443 - MPMX20_02394 0.59 -0.6 2,527,571 - -1.2 2,527,593 + -0.3 2,527,684 + MPMX20_02395 0.18 -2.1 2,527,684 + MPMX20_02395 0.18 -1.5 2,527,684 + MPMX20_02395 0.18 -0.2 2,527,692 - MPMX20_02395 0.19 -0.7 2,527,692 - MPMX20_02395 0.19 +0.0 2,527,692 - MPMX20_02395 0.19 -0.2 2,527,694 - MPMX20_02395 0.19 +0.0 2,527,704 - MPMX20_02395 0.21 +0.7 2,527,755 + MPMX20_02395 0.29 -1.2 2,527,755 + MPMX20_02395 0.29 -1.3 2,527,755 + MPMX20_02395 0.29 -1.3 2,527,758 - MPMX20_02395 0.30 -1.7 2,527,763 - MPMX20_02395 0.31 -1.2 2,527,763 - MPMX20_02395 0.31 -0.2 2,527,798 + MPMX20_02395 0.36 +0.0 2,527,854 - MPMX20_02395 0.45 -1.9 2,527,865 + MPMX20_02395 0.47 -0.7 2,527,956 + MPMX20_02395 0.62 -0.3 2,527,964 + MPMX20_02395 0.63 +0.5 2,527,972 - MPMX20_02395 0.64 +0.2 2,528,003 + MPMX20_02395 0.69 -1.5 2,528,066 - MPMX20_02395 0.80 -1.6 2,528,086 + MPMX20_02395 0.83 -2.8 2,528,094 - MPMX20_02395 0.84 -1.3 2,528,113 + MPMX20_02395 0.87 -0.2 2,528,113 + MPMX20_02395 0.87 -1.2 2,528,158 + -0.6 2,528,227 - -0.6 2,528,230 + +2.2 2,528,242 + +0.9 2,528,250 - +0.6 2,528,261 + -0.3
Or see this region's nucleotide sequence