Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02022 and MPMX20_02023 are separated by 0 nucleotides MPMX20_02023 and MPMX20_02024 are separated by 74 nucleotides
MPMX20_02022: MPMX20_02022 - Fumarate hydratase class II, at 2,113,978 to 2,115,372
_02022
MPMX20_02023: MPMX20_02023 - DNA replication terminus site-binding protein, at 2,115,373 to 2,116,302
_02023
MPMX20_02024: MPMX20_02024 - Sensor protein RstB, at 2,116,377 to 2,117,675
_02024
Position (kb)
2115
2116
2117 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2114.474 kb on - strand, within MPMX20_02022 at 2114.486 kb on + strand, within MPMX20_02022 at 2114.528 kb on - strand, within MPMX20_02022 at 2114.534 kb on + strand, within MPMX20_02022 at 2114.680 kb on + strand, within MPMX20_02022 at 2114.680 kb on + strand, within MPMX20_02022 at 2114.797 kb on - strand, within MPMX20_02022 at 2114.815 kb on + strand, within MPMX20_02022 at 2114.825 kb on - strand, within MPMX20_02022 at 2114.825 kb on - strand, within MPMX20_02022 at 2114.956 kb on - strand, within MPMX20_02022 at 2114.964 kb on + strand, within MPMX20_02022 at 2114.964 kb on + strand, within MPMX20_02022 at 2114.978 kb on - strand, within MPMX20_02022 at 2115.021 kb on - strand, within MPMX20_02022 at 2115.041 kb on + strand, within MPMX20_02022 at 2115.100 kb on - strand, within MPMX20_02022 at 2115.130 kb on - strand, within MPMX20_02022 at 2115.231 kb on + strand, within MPMX20_02022 at 2115.239 kb on - strand at 2115.305 kb on - strand at 2115.312 kb on + strand at 2115.539 kb on - strand, within MPMX20_02023 at 2115.598 kb on - strand, within MPMX20_02023 at 2115.614 kb on + strand, within MPMX20_02023 at 2115.647 kb on + strand, within MPMX20_02023 at 2115.718 kb on + strand, within MPMX20_02023 at 2115.821 kb on + strand, within MPMX20_02023 at 2115.869 kb on + strand, within MPMX20_02023 at 2115.898 kb on + strand, within MPMX20_02023 at 2115.898 kb on + strand, within MPMX20_02023 at 2115.906 kb on - strand, within MPMX20_02023 at 2115.906 kb on - strand, within MPMX20_02023 at 2115.906 kb on - strand, within MPMX20_02023 at 2115.906 kb on - strand, within MPMX20_02023 at 2115.906 kb on - strand, within MPMX20_02023 at 2115.920 kb on - strand, within MPMX20_02023 at 2115.920 kb on - strand, within MPMX20_02023 at 2116.009 kb on + strand, within MPMX20_02023 at 2116.017 kb on - strand, within MPMX20_02023 at 2116.241 kb on - strand at 2116.361 kb on - strand at 2116.361 kb on - strand at 2116.474 kb on + strand at 2116.482 kb on - strand at 2116.489 kb on - strand at 2116.508 kb on + strand, within MPMX20_02024 at 2116.546 kb on + strand, within MPMX20_02024 at 2116.586 kb on + strand, within MPMX20_02024 at 2116.629 kb on + strand, within MPMX20_02024 at 2116.629 kb on + strand, within MPMX20_02024 at 2116.764 kb on + strand, within MPMX20_02024 at 2116.792 kb on - strand, within MPMX20_02024 at 2116.821 kb on - strand, within MPMX20_02024 at 2116.840 kb on - strand, within MPMX20_02024 at 2116.840 kb on - strand, within MPMX20_02024 at 2116.884 kb on + strand, within MPMX20_02024 at 2116.884 kb on + strand, within MPMX20_02024 at 2116.892 kb on - strand, within MPMX20_02024 at 2116.903 kb on - strand, within MPMX20_02024 at 2116.906 kb on + strand, within MPMX20_02024 at 2116.937 kb on + strand, within MPMX20_02024 at 2117.064 kb on - strand, within MPMX20_02024 at 2117.064 kb on - strand, within MPMX20_02024 at 2117.118 kb on + strand, within MPMX20_02024 at 2117.196 kb on + strand, within MPMX20_02024 at 2117.204 kb on - strand, within MPMX20_02024 at 2117.263 kb on - strand, within MPMX20_02024
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 2,114,474 - MPMX20_02022 0.36 -1.1 2,114,486 + MPMX20_02022 0.36 +0.0 2,114,528 - MPMX20_02022 0.39 -1.0 2,114,534 + MPMX20_02022 0.40 +1.2 2,114,680 + MPMX20_02022 0.50 +0.7 2,114,680 + MPMX20_02022 0.50 -0.1 2,114,797 - MPMX20_02022 0.59 +1.5 2,114,815 + MPMX20_02022 0.60 +1.2 2,114,825 - MPMX20_02022 0.61 +0.5 2,114,825 - MPMX20_02022 0.61 +0.4 2,114,956 - MPMX20_02022 0.70 +0.8 2,114,964 + MPMX20_02022 0.71 +0.2 2,114,964 + MPMX20_02022 0.71 +0.2 2,114,978 - MPMX20_02022 0.72 -1.6 2,115,021 - MPMX20_02022 0.75 -0.2 2,115,041 + MPMX20_02022 0.76 -0.7 2,115,100 - MPMX20_02022 0.80 -2.0 2,115,130 - MPMX20_02022 0.83 -1.4 2,115,231 + MPMX20_02022 0.90 +2.4 2,115,239 - -0.8 2,115,305 - +0.6 2,115,312 + -0.2 2,115,539 - MPMX20_02023 0.18 -1.5 2,115,598 - MPMX20_02023 0.24 -0.8 2,115,614 + MPMX20_02023 0.26 -2.1 2,115,647 + MPMX20_02023 0.29 -1.2 2,115,718 + MPMX20_02023 0.37 -0.6 2,115,821 + MPMX20_02023 0.48 +0.0 2,115,869 + MPMX20_02023 0.53 -0.9 2,115,898 + MPMX20_02023 0.56 +2.0 2,115,898 + MPMX20_02023 0.56 -0.1 2,115,906 - MPMX20_02023 0.57 -1.4 2,115,906 - MPMX20_02023 0.57 -2.6 2,115,906 - MPMX20_02023 0.57 -2.5 2,115,906 - MPMX20_02023 0.57 -1.8 2,115,906 - MPMX20_02023 0.57 -0.4 2,115,920 - MPMX20_02023 0.59 +0.2 2,115,920 - MPMX20_02023 0.59 -0.1 2,116,009 + MPMX20_02023 0.68 +0.3 2,116,017 - MPMX20_02023 0.69 +0.6 2,116,241 - -0.8 2,116,361 - +1.6 2,116,361 - -0.3 2,116,474 + +0.2 2,116,482 - -1.4 2,116,489 - +0.2 2,116,508 + MPMX20_02024 0.10 +1.6 2,116,546 + MPMX20_02024 0.13 +0.7 2,116,586 + MPMX20_02024 0.16 -1.0 2,116,629 + MPMX20_02024 0.19 +0.1 2,116,629 + MPMX20_02024 0.19 -0.3 2,116,764 + MPMX20_02024 0.30 +0.2 2,116,792 - MPMX20_02024 0.32 +0.9 2,116,821 - MPMX20_02024 0.34 -1.3 2,116,840 - MPMX20_02024 0.36 -1.7 2,116,840 - MPMX20_02024 0.36 +0.5 2,116,884 + MPMX20_02024 0.39 +0.4 2,116,884 + MPMX20_02024 0.39 +2.1 2,116,892 - MPMX20_02024 0.40 -0.1 2,116,903 - MPMX20_02024 0.40 +0.3 2,116,906 + MPMX20_02024 0.41 -0.0 2,116,937 + MPMX20_02024 0.43 +0.7 2,117,064 - MPMX20_02024 0.53 +0.4 2,117,064 - MPMX20_02024 0.53 -1.2 2,117,118 + MPMX20_02024 0.57 -0.4 2,117,196 + MPMX20_02024 0.63 -0.9 2,117,204 - MPMX20_02024 0.64 +0.1 2,117,263 - MPMX20_02024 0.68 +0.8
Or see this region's nucleotide sequence