Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01777 and MPMX20_01778 overlap by 11 nucleotides MPMX20_01778 and MPMX20_01779 overlap by 4 nucleotides MPMX20_01779 and MPMX20_01780 are separated by 10 nucleotides
MPMX20_01777: MPMX20_01777 - Endolytic murein transglycosylase, at 1,869,185 to 1,870,207
_01777
MPMX20_01778: MPMX20_01778 - Thymidylate kinase, at 1,870,197 to 1,870,838
_01778
MPMX20_01779: MPMX20_01779 - DNA polymerase III subunit delta', at 1,870,835 to 1,871,839
_01779
MPMX20_01780: MPMX20_01780 - putative metal-dependent hydrolase YcfH, at 1,871,850 to 1,872,644
_01780
Position (kb)
1870
1871
1872 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1869.892 kb on + strand, within MPMX20_01777 at 1869.900 kb on - strand, within MPMX20_01777 at 1869.984 kb on + strand, within MPMX20_01777 at 1869.992 kb on - strand, within MPMX20_01777 at 1870.003 kb on - strand, within MPMX20_01777 at 1870.045 kb on + strand, within MPMX20_01777 at 1870.067 kb on + strand, within MPMX20_01777 at 1870.163 kb on + strand at 1870.816 kb on + strand at 1871.927 kb on + strand at 1871.927 kb on + strand at 1871.935 kb on - strand, within MPMX20_01780 at 1871.935 kb on - strand, within MPMX20_01780 at 1872.140 kb on + strand, within MPMX20_01780 at 1872.140 kb on + strand, within MPMX20_01780 at 1872.140 kb on + strand, within MPMX20_01780 at 1872.184 kb on + strand, within MPMX20_01780 at 1872.306 kb on + strand, within MPMX20_01780 at 1872.314 kb on - strand, within MPMX20_01780 at 1872.314 kb on - strand, within MPMX20_01780 at 1872.395 kb on + strand, within MPMX20_01780 at 1872.395 kb on + strand, within MPMX20_01780 at 1872.403 kb on - strand, within MPMX20_01780 at 1872.513 kb on + strand, within MPMX20_01780 at 1872.521 kb on - strand, within MPMX20_01780 at 1872.526 kb on - strand, within MPMX20_01780 at 1872.531 kb on + strand, within MPMX20_01780 at 1872.548 kb on + strand, within MPMX20_01780 at 1872.556 kb on - strand, within MPMX20_01780 at 1872.570 kb on - strand at 1872.583 kb on - strand at 1872.598 kb on + strand at 1872.608 kb on + strand at 1872.608 kb on + strand at 1872.616 kb on - strand at 1872.616 kb on - strand at 1872.616 kb on - strand at 1872.616 kb on - strand at 1872.700 kb on + strand at 1872.784 kb on - strand at 1872.784 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 1,869,892 + MPMX20_01777 0.69 +0.0 1,869,900 - MPMX20_01777 0.70 -1.5 1,869,984 + MPMX20_01777 0.78 -2.1 1,869,992 - MPMX20_01777 0.79 -1.0 1,870,003 - MPMX20_01777 0.80 +1.8 1,870,045 + MPMX20_01777 0.84 -1.5 1,870,067 + MPMX20_01777 0.86 -0.1 1,870,163 + -0.8 1,870,816 + +1.5 1,871,927 + -1.5 1,871,927 + -0.8 1,871,935 - MPMX20_01780 0.11 -0.8 1,871,935 - MPMX20_01780 0.11 +1.3 1,872,140 + MPMX20_01780 0.36 -0.1 1,872,140 + MPMX20_01780 0.36 +0.9 1,872,140 + MPMX20_01780 0.36 -1.0 1,872,184 + MPMX20_01780 0.42 -1.5 1,872,306 + MPMX20_01780 0.57 -1.4 1,872,314 - MPMX20_01780 0.58 +1.0 1,872,314 - MPMX20_01780 0.58 -0.5 1,872,395 + MPMX20_01780 0.69 +0.0 1,872,395 + MPMX20_01780 0.69 +0.4 1,872,403 - MPMX20_01780 0.70 -0.2 1,872,513 + MPMX20_01780 0.83 +0.5 1,872,521 - MPMX20_01780 0.84 -0.7 1,872,526 - MPMX20_01780 0.85 +0.2 1,872,531 + MPMX20_01780 0.86 -3.2 1,872,548 + MPMX20_01780 0.88 +0.2 1,872,556 - MPMX20_01780 0.89 -2.3 1,872,570 - -0.5 1,872,583 - -1.2 1,872,598 + +1.4 1,872,608 + +0.5 1,872,608 + -2.2 1,872,616 - -0.0 1,872,616 - +0.5 1,872,616 - -0.2 1,872,616 - -1.9 1,872,700 + +0.0 1,872,784 - +0.5 1,872,784 - +0.3
Or see this region's nucleotide sequence