Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01779

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01777 and MPMX20_01778 overlap by 11 nucleotidesMPMX20_01778 and MPMX20_01779 overlap by 4 nucleotidesMPMX20_01779 and MPMX20_01780 are separated by 10 nucleotides MPMX20_01777: MPMX20_01777 - Endolytic murein transglycosylase, at 1,869,185 to 1,870,207 _01777 MPMX20_01778: MPMX20_01778 - Thymidylate kinase, at 1,870,197 to 1,870,838 _01778 MPMX20_01779: MPMX20_01779 - DNA polymerase III subunit delta', at 1,870,835 to 1,871,839 _01779 MPMX20_01780: MPMX20_01780 - putative metal-dependent hydrolase YcfH, at 1,871,850 to 1,872,644 _01780 Position (kb) 1870 1871 1872Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1869.892 kb on + strand, within MPMX20_01777at 1869.900 kb on - strand, within MPMX20_01777at 1869.984 kb on + strand, within MPMX20_01777at 1869.992 kb on - strand, within MPMX20_01777at 1870.003 kb on - strand, within MPMX20_01777at 1870.045 kb on + strand, within MPMX20_01777at 1870.067 kb on + strand, within MPMX20_01777at 1870.163 kb on + strandat 1870.816 kb on + strandat 1871.927 kb on + strandat 1871.927 kb on + strandat 1871.935 kb on - strand, within MPMX20_01780at 1871.935 kb on - strand, within MPMX20_01780at 1872.140 kb on + strand, within MPMX20_01780at 1872.140 kb on + strand, within MPMX20_01780at 1872.140 kb on + strand, within MPMX20_01780at 1872.184 kb on + strand, within MPMX20_01780at 1872.306 kb on + strand, within MPMX20_01780at 1872.314 kb on - strand, within MPMX20_01780at 1872.314 kb on - strand, within MPMX20_01780at 1872.395 kb on + strand, within MPMX20_01780at 1872.395 kb on + strand, within MPMX20_01780at 1872.403 kb on - strand, within MPMX20_01780at 1872.513 kb on + strand, within MPMX20_01780at 1872.521 kb on - strand, within MPMX20_01780at 1872.526 kb on - strand, within MPMX20_01780at 1872.531 kb on + strand, within MPMX20_01780at 1872.548 kb on + strand, within MPMX20_01780at 1872.556 kb on - strand, within MPMX20_01780at 1872.570 kb on - strandat 1872.583 kb on - strandat 1872.598 kb on + strandat 1872.608 kb on + strandat 1872.608 kb on + strandat 1872.616 kb on - strandat 1872.616 kb on - strandat 1872.616 kb on - strandat 1872.616 kb on - strandat 1872.700 kb on + strandat 1872.784 kb on - strandat 1872.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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1,869,892 + MPMX20_01777 0.69 +0.0
1,869,900 - MPMX20_01777 0.70 -1.5
1,869,984 + MPMX20_01777 0.78 -2.1
1,869,992 - MPMX20_01777 0.79 -1.0
1,870,003 - MPMX20_01777 0.80 +1.8
1,870,045 + MPMX20_01777 0.84 -1.5
1,870,067 + MPMX20_01777 0.86 -0.1
1,870,163 + -0.8
1,870,816 + +1.5
1,871,927 + -1.5
1,871,927 + -0.8
1,871,935 - MPMX20_01780 0.11 -0.8
1,871,935 - MPMX20_01780 0.11 +1.3
1,872,140 + MPMX20_01780 0.36 -0.1
1,872,140 + MPMX20_01780 0.36 +0.9
1,872,140 + MPMX20_01780 0.36 -1.0
1,872,184 + MPMX20_01780 0.42 -1.5
1,872,306 + MPMX20_01780 0.57 -1.4
1,872,314 - MPMX20_01780 0.58 +1.0
1,872,314 - MPMX20_01780 0.58 -0.5
1,872,395 + MPMX20_01780 0.69 +0.0
1,872,395 + MPMX20_01780 0.69 +0.4
1,872,403 - MPMX20_01780 0.70 -0.2
1,872,513 + MPMX20_01780 0.83 +0.5
1,872,521 - MPMX20_01780 0.84 -0.7
1,872,526 - MPMX20_01780 0.85 +0.2
1,872,531 + MPMX20_01780 0.86 -3.2
1,872,548 + MPMX20_01780 0.88 +0.2
1,872,556 - MPMX20_01780 0.89 -2.3
1,872,570 - -0.5
1,872,583 - -1.2
1,872,598 + +1.4
1,872,608 + +0.5
1,872,608 + -2.2
1,872,616 - -0.0
1,872,616 - +0.5
1,872,616 - -0.2
1,872,616 - -1.9
1,872,700 + +0.0
1,872,784 - +0.5
1,872,784 - +0.3

Or see this region's nucleotide sequence