Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01551

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01550 and MPMX20_01551 are separated by 517 nucleotidesMPMX20_01551 and MPMX20_01552 are separated by 135 nucleotides MPMX20_01550: MPMX20_01550 - Thioredoxin reductase, at 1,623,372 to 1,624,367 _01550 MPMX20_01551: MPMX20_01551 - Leucine-responsive regulatory protein, at 1,624,885 to 1,625,379 _01551 MPMX20_01552: MPMX20_01552 - hypothetical protein, at 1,625,515 to 1,629,378 _01552 Position (kb) 1624 1625 1626Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1624.267 kb on + strand, within MPMX20_01550at 1624.267 kb on + strand, within MPMX20_01550at 1624.267 kb on + strand, within MPMX20_01550at 1624.275 kb on - strandat 1624.275 kb on - strandat 1624.275 kb on - strandat 1624.323 kb on + strandat 1624.323 kb on + strandat 1624.323 kb on + strandat 1624.325 kb on + strandat 1624.333 kb on - strandat 1624.336 kb on + strandat 1624.343 kb on - strandat 1624.454 kb on - strandat 1624.467 kb on + strandat 1624.524 kb on - strandat 1624.526 kb on - strandat 1624.583 kb on + strandat 1624.647 kb on - strandat 1624.695 kb on + strandat 1624.716 kb on - strandat 1624.819 kb on + strandat 1624.819 kb on + strandat 1624.819 kb on + strandat 1624.827 kb on - strandat 1624.827 kb on - strandat 1624.831 kb on + strandat 1624.832 kb on - strandat 1624.839 kb on - strandat 1624.841 kb on + strandat 1624.841 kb on + strandat 1624.841 kb on + strandat 1624.842 kb on + strandat 1624.842 kb on + strandat 1624.843 kb on + strandat 1624.851 kb on - strandat 1624.855 kb on - strandat 1624.856 kb on - strandat 1624.863 kb on + strandat 1624.923 kb on - strandat 1624.923 kb on - strandat 1625.019 kb on + strand, within MPMX20_01551at 1625.027 kb on - strand, within MPMX20_01551at 1625.034 kb on - strand, within MPMX20_01551at 1625.061 kb on + strand, within MPMX20_01551at 1625.061 kb on + strand, within MPMX20_01551at 1625.061 kb on + strand, within MPMX20_01551at 1625.069 kb on - strand, within MPMX20_01551at 1625.069 kb on - strand, within MPMX20_01551at 1625.069 kb on - strand, within MPMX20_01551at 1625.069 kb on - strand, within MPMX20_01551at 1625.071 kb on + strand, within MPMX20_01551at 1625.074 kb on - strand, within MPMX20_01551at 1625.082 kb on - strand, within MPMX20_01551at 1625.272 kb on - strand, within MPMX20_01551at 1625.285 kb on - strand, within MPMX20_01551at 1625.321 kb on + strand, within MPMX20_01551at 1625.329 kb on - strand, within MPMX20_01551at 1625.329 kb on - strand, within MPMX20_01551at 1625.349 kb on + strandat 1625.379 kb on + strandat 1625.387 kb on - strandat 1625.486 kb on + strandat 1625.486 kb on + strandat 1626.089 kb on + strand, within MPMX20_01552at 1626.111 kb on - strand, within MPMX20_01552at 1626.181 kb on + strand, within MPMX20_01552at 1626.189 kb on - strand, within MPMX20_01552

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
remove
1,624,267 + MPMX20_01550 0.90 -1.4
1,624,267 + MPMX20_01550 0.90 +0.5
1,624,267 + MPMX20_01550 0.90 -0.1
1,624,275 - -0.3
1,624,275 - -1.5
1,624,275 - -1.1
1,624,323 + -1.0
1,624,323 + -2.0
1,624,323 + +2.5
1,624,325 + -0.1
1,624,333 - -0.1
1,624,336 + -0.8
1,624,343 - +1.7
1,624,454 - +1.0
1,624,467 + +0.5
1,624,524 - -1.8
1,624,526 - +0.2
1,624,583 + -3.0
1,624,647 - -2.1
1,624,695 + -1.1
1,624,716 - -1.9
1,624,819 + +0.1
1,624,819 + +0.5
1,624,819 + -0.7
1,624,827 - -2.2
1,624,827 - +0.3
1,624,831 + -3.0
1,624,832 - -1.7
1,624,839 - -1.2
1,624,841 + -1.7
1,624,841 + -1.9
1,624,841 + -0.8
1,624,842 + -0.9
1,624,842 + -1.4
1,624,843 + -1.2
1,624,851 - -0.9
1,624,855 - +0.9
1,624,856 - -0.3
1,624,863 + -1.7
1,624,923 - -2.7
1,624,923 - +0.5
1,625,019 + MPMX20_01551 0.27 -2.1
1,625,027 - MPMX20_01551 0.29 -0.4
1,625,034 - MPMX20_01551 0.30 -1.7
1,625,061 + MPMX20_01551 0.36 -0.1
1,625,061 + MPMX20_01551 0.36 -0.1
1,625,061 + MPMX20_01551 0.36 +2.1
1,625,069 - MPMX20_01551 0.37 -0.2
1,625,069 - MPMX20_01551 0.37 -1.5
1,625,069 - MPMX20_01551 0.37 -3.0
1,625,069 - MPMX20_01551 0.37 +0.2
1,625,071 + MPMX20_01551 0.38 -2.4
1,625,074 - MPMX20_01551 0.38 +2.5
1,625,082 - MPMX20_01551 0.40 -1.1
1,625,272 - MPMX20_01551 0.78 -0.8
1,625,285 - MPMX20_01551 0.81 -0.5
1,625,321 + MPMX20_01551 0.88 -2.1
1,625,329 - MPMX20_01551 0.90 +1.5
1,625,329 - MPMX20_01551 0.90 -1.7
1,625,349 + +0.9
1,625,379 + +0.1
1,625,387 - -1.6
1,625,486 + +3.2
1,625,486 + +0.9
1,626,089 + MPMX20_01552 0.15 +0.5
1,626,111 - MPMX20_01552 0.15 +0.9
1,626,181 + MPMX20_01552 0.17 -0.5
1,626,189 - MPMX20_01552 0.17 -0.1

Or see this region's nucleotide sequence