Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01378

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01377 and MPMX20_01378 are separated by 22 nucleotidesMPMX20_01378 and MPMX20_01379 overlap by 4 nucleotides MPMX20_01377: MPMX20_01377 - Quinolinate synthase A, at 1,439,504 to 1,440,547 _01377 MPMX20_01378: MPMX20_01378 - Nicotinamide riboside transporter PnuC, at 1,440,570 to 1,441,289 _01378 MPMX20_01379: MPMX20_01379 - Zinc transporter ZitB, at 1,441,286 to 1,442,224 _01379 Position (kb) 1440 1441 1442Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1439.599 kb on + strandat 1439.642 kb on + strand, within MPMX20_01377at 1439.644 kb on + strand, within MPMX20_01377at 1439.652 kb on - strand, within MPMX20_01377at 1439.652 kb on - strand, within MPMX20_01377at 1439.652 kb on - strand, within MPMX20_01377at 1439.904 kb on + strand, within MPMX20_01377at 1439.921 kb on + strand, within MPMX20_01377at 1439.953 kb on + strand, within MPMX20_01377at 1440.072 kb on + strand, within MPMX20_01377at 1440.077 kb on + strand, within MPMX20_01377at 1440.290 kb on - strand, within MPMX20_01377at 1440.374 kb on + strand, within MPMX20_01377at 1440.382 kb on - strand, within MPMX20_01377at 1440.404 kb on + strand, within MPMX20_01377at 1440.426 kb on + strand, within MPMX20_01377at 1440.447 kb on - strandat 1440.484 kb on + strandat 1440.484 kb on + strandat 1440.484 kb on + strandat 1440.484 kb on + strandat 1440.492 kb on - strandat 1440.633 kb on - strandat 1440.635 kb on + strandat 1440.643 kb on - strand, within MPMX20_01378at 1440.738 kb on - strand, within MPMX20_01378at 1440.767 kb on + strand, within MPMX20_01378at 1440.775 kb on - strand, within MPMX20_01378at 1440.845 kb on - strand, within MPMX20_01378at 1440.845 kb on - strand, within MPMX20_01378at 1440.855 kb on - strand, within MPMX20_01378at 1440.938 kb on - strand, within MPMX20_01378at 1440.966 kb on + strand, within MPMX20_01378at 1440.974 kb on - strand, within MPMX20_01378at 1440.994 kb on + strand, within MPMX20_01378at 1441.216 kb on + strand, within MPMX20_01378at 1441.224 kb on - strandat 1441.355 kb on - strandat 1441.360 kb on - strandat 1441.376 kb on + strandat 1441.419 kb on + strand, within MPMX20_01379at 1441.419 kb on + strand, within MPMX20_01379at 1441.510 kb on + strand, within MPMX20_01379at 1441.533 kb on - strand, within MPMX20_01379at 1441.536 kb on + strand, within MPMX20_01379at 1441.595 kb on - strand, within MPMX20_01379at 1441.595 kb on - strand, within MPMX20_01379at 1441.600 kb on + strand, within MPMX20_01379at 1441.610 kb on + strand, within MPMX20_01379at 1441.642 kb on - strand, within MPMX20_01379at 1441.878 kb on + strand, within MPMX20_01379at 1441.878 kb on + strand, within MPMX20_01379at 1441.976 kb on - strand, within MPMX20_01379at 1442.076 kb on - strand, within MPMX20_01379at 1442.102 kb on + strand, within MPMX20_01379at 1442.142 kb on - strandat 1442.142 kb on - strandat 1442.164 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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1,439,599 + -1.1
1,439,642 + MPMX20_01377 0.13 -0.6
1,439,644 + MPMX20_01377 0.13 -1.6
1,439,652 - MPMX20_01377 0.14 +2.2
1,439,652 - MPMX20_01377 0.14 -3.1
1,439,652 - MPMX20_01377 0.14 -1.9
1,439,904 + MPMX20_01377 0.38 -0.9
1,439,921 + MPMX20_01377 0.40 -1.5
1,439,953 + MPMX20_01377 0.43 -0.7
1,440,072 + MPMX20_01377 0.54 -1.7
1,440,077 + MPMX20_01377 0.55 -1.2
1,440,290 - MPMX20_01377 0.75 -0.3
1,440,374 + MPMX20_01377 0.83 -1.9
1,440,382 - MPMX20_01377 0.84 -2.9
1,440,404 + MPMX20_01377 0.86 +0.3
1,440,426 + MPMX20_01377 0.88 -1.5
1,440,447 - -1.2
1,440,484 + -3.2
1,440,484 + -3.0
1,440,484 + +0.5
1,440,484 + +0.5
1,440,492 - -3.1
1,440,633 - +0.2
1,440,635 + -1.5
1,440,643 - MPMX20_01378 0.10 +1.1
1,440,738 - MPMX20_01378 0.23 -0.8
1,440,767 + MPMX20_01378 0.27 -2.5
1,440,775 - MPMX20_01378 0.28 -1.8
1,440,845 - MPMX20_01378 0.38 -0.3
1,440,845 - MPMX20_01378 0.38 +0.8
1,440,855 - MPMX20_01378 0.40 +0.7
1,440,938 - MPMX20_01378 0.51 -0.7
1,440,966 + MPMX20_01378 0.55 -2.6
1,440,974 - MPMX20_01378 0.56 +3.5
1,440,994 + MPMX20_01378 0.59 +0.2
1,441,216 + MPMX20_01378 0.90 +0.9
1,441,224 - +0.6
1,441,355 - -1.2
1,441,360 - +2.5
1,441,376 + -1.3
1,441,419 + MPMX20_01379 0.14 -0.4
1,441,419 + MPMX20_01379 0.14 -0.9
1,441,510 + MPMX20_01379 0.24 -1.2
1,441,533 - MPMX20_01379 0.26 -1.1
1,441,536 + MPMX20_01379 0.27 +1.5
1,441,595 - MPMX20_01379 0.33 -0.7
1,441,595 - MPMX20_01379 0.33 -0.3
1,441,600 + MPMX20_01379 0.33 -2.2
1,441,610 + MPMX20_01379 0.35 -1.1
1,441,642 - MPMX20_01379 0.38 -0.5
1,441,878 + MPMX20_01379 0.63 -0.4
1,441,878 + MPMX20_01379 0.63 -1.7
1,441,976 - MPMX20_01379 0.73 -0.9
1,442,076 - MPMX20_01379 0.84 -0.3
1,442,102 + MPMX20_01379 0.87 -1.9
1,442,142 - -0.8
1,442,142 - +1.4
1,442,164 + +0.1

Or see this region's nucleotide sequence