Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01377 and MPMX20_01378 are separated by 22 nucleotides MPMX20_01378 and MPMX20_01379 overlap by 4 nucleotides
MPMX20_01377: MPMX20_01377 - Quinolinate synthase A, at 1,439,504 to 1,440,547
_01377
MPMX20_01378: MPMX20_01378 - Nicotinamide riboside transporter PnuC, at 1,440,570 to 1,441,289
_01378
MPMX20_01379: MPMX20_01379 - Zinc transporter ZitB, at 1,441,286 to 1,442,224
_01379
Position (kb)
1440
1441
1442 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1439.599 kb on + strand at 1439.642 kb on + strand, within MPMX20_01377 at 1439.644 kb on + strand, within MPMX20_01377 at 1439.652 kb on - strand, within MPMX20_01377 at 1439.652 kb on - strand, within MPMX20_01377 at 1439.652 kb on - strand, within MPMX20_01377 at 1439.904 kb on + strand, within MPMX20_01377 at 1439.921 kb on + strand, within MPMX20_01377 at 1439.953 kb on + strand, within MPMX20_01377 at 1440.072 kb on + strand, within MPMX20_01377 at 1440.077 kb on + strand, within MPMX20_01377 at 1440.290 kb on - strand, within MPMX20_01377 at 1440.374 kb on + strand, within MPMX20_01377 at 1440.382 kb on - strand, within MPMX20_01377 at 1440.404 kb on + strand, within MPMX20_01377 at 1440.426 kb on + strand, within MPMX20_01377 at 1440.447 kb on - strand at 1440.484 kb on + strand at 1440.484 kb on + strand at 1440.484 kb on + strand at 1440.484 kb on + strand at 1440.492 kb on - strand at 1440.633 kb on - strand at 1440.635 kb on + strand at 1440.643 kb on - strand, within MPMX20_01378 at 1440.738 kb on - strand, within MPMX20_01378 at 1440.767 kb on + strand, within MPMX20_01378 at 1440.775 kb on - strand, within MPMX20_01378 at 1440.845 kb on - strand, within MPMX20_01378 at 1440.845 kb on - strand, within MPMX20_01378 at 1440.855 kb on - strand, within MPMX20_01378 at 1440.938 kb on - strand, within MPMX20_01378 at 1440.966 kb on + strand, within MPMX20_01378 at 1440.974 kb on - strand, within MPMX20_01378 at 1440.994 kb on + strand, within MPMX20_01378 at 1441.216 kb on + strand, within MPMX20_01378 at 1441.224 kb on - strand at 1441.355 kb on - strand at 1441.360 kb on - strand at 1441.376 kb on + strand at 1441.419 kb on + strand, within MPMX20_01379 at 1441.419 kb on + strand, within MPMX20_01379 at 1441.510 kb on + strand, within MPMX20_01379 at 1441.533 kb on - strand, within MPMX20_01379 at 1441.536 kb on + strand, within MPMX20_01379 at 1441.595 kb on - strand, within MPMX20_01379 at 1441.595 kb on - strand, within MPMX20_01379 at 1441.600 kb on + strand, within MPMX20_01379 at 1441.610 kb on + strand, within MPMX20_01379 at 1441.642 kb on - strand, within MPMX20_01379 at 1441.878 kb on + strand, within MPMX20_01379 at 1441.878 kb on + strand, within MPMX20_01379 at 1441.976 kb on - strand, within MPMX20_01379 at 1442.076 kb on - strand, within MPMX20_01379 at 1442.102 kb on + strand, within MPMX20_01379 at 1442.142 kb on - strand at 1442.142 kb on - strand at 1442.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 1,439,599 + -1.1 1,439,642 + MPMX20_01377 0.13 -0.6 1,439,644 + MPMX20_01377 0.13 -1.6 1,439,652 - MPMX20_01377 0.14 +2.2 1,439,652 - MPMX20_01377 0.14 -3.1 1,439,652 - MPMX20_01377 0.14 -1.9 1,439,904 + MPMX20_01377 0.38 -0.9 1,439,921 + MPMX20_01377 0.40 -1.5 1,439,953 + MPMX20_01377 0.43 -0.7 1,440,072 + MPMX20_01377 0.54 -1.7 1,440,077 + MPMX20_01377 0.55 -1.2 1,440,290 - MPMX20_01377 0.75 -0.3 1,440,374 + MPMX20_01377 0.83 -1.9 1,440,382 - MPMX20_01377 0.84 -2.9 1,440,404 + MPMX20_01377 0.86 +0.3 1,440,426 + MPMX20_01377 0.88 -1.5 1,440,447 - -1.2 1,440,484 + -3.2 1,440,484 + -3.0 1,440,484 + +0.5 1,440,484 + +0.5 1,440,492 - -3.1 1,440,633 - +0.2 1,440,635 + -1.5 1,440,643 - MPMX20_01378 0.10 +1.1 1,440,738 - MPMX20_01378 0.23 -0.8 1,440,767 + MPMX20_01378 0.27 -2.5 1,440,775 - MPMX20_01378 0.28 -1.8 1,440,845 - MPMX20_01378 0.38 -0.3 1,440,845 - MPMX20_01378 0.38 +0.8 1,440,855 - MPMX20_01378 0.40 +0.7 1,440,938 - MPMX20_01378 0.51 -0.7 1,440,966 + MPMX20_01378 0.55 -2.6 1,440,974 - MPMX20_01378 0.56 +3.5 1,440,994 + MPMX20_01378 0.59 +0.2 1,441,216 + MPMX20_01378 0.90 +0.9 1,441,224 - +0.6 1,441,355 - -1.2 1,441,360 - +2.5 1,441,376 + -1.3 1,441,419 + MPMX20_01379 0.14 -0.4 1,441,419 + MPMX20_01379 0.14 -0.9 1,441,510 + MPMX20_01379 0.24 -1.2 1,441,533 - MPMX20_01379 0.26 -1.1 1,441,536 + MPMX20_01379 0.27 +1.5 1,441,595 - MPMX20_01379 0.33 -0.7 1,441,595 - MPMX20_01379 0.33 -0.3 1,441,600 + MPMX20_01379 0.33 -2.2 1,441,610 + MPMX20_01379 0.35 -1.1 1,441,642 - MPMX20_01379 0.38 -0.5 1,441,878 + MPMX20_01379 0.63 -0.4 1,441,878 + MPMX20_01379 0.63 -1.7 1,441,976 - MPMX20_01379 0.73 -0.9 1,442,076 - MPMX20_01379 0.84 -0.3 1,442,102 + MPMX20_01379 0.87 -1.9 1,442,142 - -0.8 1,442,142 - +1.4 1,442,164 + +0.1
Or see this region's nucleotide sequence