Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01074

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01072 and MPMX20_01073 are separated by 54 nucleotidesMPMX20_01073 and MPMX20_01074 overlap by 1 nucleotidesMPMX20_01074 and MPMX20_01075 are separated by 110 nucleotides MPMX20_01072: MPMX20_01072 - DNA polymerase III subunit tau, at 1,128,823 to 1,130,751 _01072 MPMX20_01073: MPMX20_01073 - Nucleoid-associated protein YbaB, at 1,130,806 to 1,131,138 _01073 MPMX20_01074: MPMX20_01074 - Recombination protein RecR, at 1,131,138 to 1,131,743 _01074 MPMX20_01075: MPMX20_01075 - Chaperone protein HtpG, at 1,131,854 to 1,133,728 _01075 Position (kb) 1131 1132Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1130.770 kb on - strandat 1130.792 kb on + strandat 1130.810 kb on - strandat 1130.921 kb on + strand, within MPMX20_01073at 1130.931 kb on + strand, within MPMX20_01073at 1130.931 kb on + strand, within MPMX20_01073at 1130.981 kb on + strand, within MPMX20_01073at 1131.126 kb on - strandat 1131.151 kb on - strandat 1131.153 kb on - strandat 1131.198 kb on + strandat 1131.281 kb on - strand, within MPMX20_01074at 1131.341 kb on + strand, within MPMX20_01074at 1131.347 kb on + strand, within MPMX20_01074at 1131.347 kb on + strand, within MPMX20_01074at 1131.357 kb on + strand, within MPMX20_01074at 1131.383 kb on + strand, within MPMX20_01074at 1131.401 kb on - strand, within MPMX20_01074at 1131.451 kb on + strand, within MPMX20_01074at 1131.487 kb on + strand, within MPMX20_01074at 1131.487 kb on + strand, within MPMX20_01074at 1131.487 kb on + strand, within MPMX20_01074at 1131.517 kb on + strand, within MPMX20_01074at 1131.517 kb on + strand, within MPMX20_01074at 1131.517 kb on + strand, within MPMX20_01074at 1131.517 kb on + strand, within MPMX20_01074at 1131.525 kb on - strand, within MPMX20_01074at 1131.631 kb on + strand, within MPMX20_01074at 1131.694 kb on + strandat 1131.704 kb on + strandat 1131.704 kb on + strandat 1131.853 kb on + strandat 1131.996 kb on + strandat 1132.006 kb on + strandat 1132.032 kb on + strandat 1132.040 kb on - strandat 1132.045 kb on - strand, within MPMX20_01075at 1132.103 kb on + strand, within MPMX20_01075at 1132.103 kb on + strand, within MPMX20_01075at 1132.111 kb on - strand, within MPMX20_01075at 1132.181 kb on - strand, within MPMX20_01075at 1132.182 kb on + strand, within MPMX20_01075at 1132.224 kb on + strand, within MPMX20_01075at 1132.237 kb on - strand, within MPMX20_01075at 1132.241 kb on + strand, within MPMX20_01075at 1132.260 kb on + strand, within MPMX20_01075at 1132.331 kb on + strand, within MPMX20_01075at 1132.341 kb on + strand, within MPMX20_01075at 1132.383 kb on + strand, within MPMX20_01075at 1132.383 kb on + strand, within MPMX20_01075at 1132.383 kb on + strand, within MPMX20_01075at 1132.391 kb on - strand, within MPMX20_01075at 1132.391 kb on - strand, within MPMX20_01075at 1132.452 kb on + strand, within MPMX20_01075at 1132.561 kb on + strand, within MPMX20_01075at 1132.583 kb on + strand, within MPMX20_01075at 1132.618 kb on + strand, within MPMX20_01075at 1132.638 kb on + strand, within MPMX20_01075at 1132.638 kb on + strand, within MPMX20_01075at 1132.638 kb on + strand, within MPMX20_01075at 1132.669 kb on + strand, within MPMX20_01075at 1132.678 kb on - strand, within MPMX20_01075at 1132.740 kb on + strand, within MPMX20_01075at 1132.740 kb on + strand, within MPMX20_01075at 1132.740 kb on + strand, within MPMX20_01075

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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1,130,770 - +0.5
1,130,792 + -0.1
1,130,810 - +0.5
1,130,921 + MPMX20_01073 0.35 +1.5
1,130,931 + MPMX20_01073 0.38 -1.7
1,130,931 + MPMX20_01073 0.38 -2.3
1,130,981 + MPMX20_01073 0.53 -1.1
1,131,126 - +0.7
1,131,151 - -0.9
1,131,153 - -1.6
1,131,198 + -0.8
1,131,281 - MPMX20_01074 0.24 -1.1
1,131,341 + MPMX20_01074 0.33 +1.5
1,131,347 + MPMX20_01074 0.34 +0.2
1,131,347 + MPMX20_01074 0.34 -0.7
1,131,357 + MPMX20_01074 0.36 +0.9
1,131,383 + MPMX20_01074 0.40 -1.8
1,131,401 - MPMX20_01074 0.43 -1.3
1,131,451 + MPMX20_01074 0.52 -1.3
1,131,487 + MPMX20_01074 0.58 -2.0
1,131,487 + MPMX20_01074 0.58 -0.5
1,131,487 + MPMX20_01074 0.58 -1.1
1,131,517 + MPMX20_01074 0.63 +0.6
1,131,517 + MPMX20_01074 0.63 +0.3
1,131,517 + MPMX20_01074 0.63 -2.0
1,131,517 + MPMX20_01074 0.63 -0.1
1,131,525 - MPMX20_01074 0.64 -1.0
1,131,631 + MPMX20_01074 0.81 +0.7
1,131,694 + -3.5
1,131,704 + -0.5
1,131,704 + -0.7
1,131,853 + -1.0
1,131,996 + -0.6
1,132,006 + +0.8
1,132,032 + +1.3
1,132,040 - -0.2
1,132,045 - MPMX20_01075 0.10 +0.6
1,132,103 + MPMX20_01075 0.13 -2.9
1,132,103 + MPMX20_01075 0.13 +4.1
1,132,111 - MPMX20_01075 0.14 +0.0
1,132,181 - MPMX20_01075 0.17 +1.3
1,132,182 + MPMX20_01075 0.17 -0.4
1,132,224 + MPMX20_01075 0.20 +0.9
1,132,237 - MPMX20_01075 0.20 +0.9
1,132,241 + MPMX20_01075 0.21 +0.5
1,132,260 + MPMX20_01075 0.22 +1.3
1,132,331 + MPMX20_01075 0.25 -1.1
1,132,341 + MPMX20_01075 0.26 -1.1
1,132,383 + MPMX20_01075 0.28 -1.7
1,132,383 + MPMX20_01075 0.28 -1.0
1,132,383 + MPMX20_01075 0.28 -1.6
1,132,391 - MPMX20_01075 0.29 +1.3
1,132,391 - MPMX20_01075 0.29 -1.2
1,132,452 + MPMX20_01075 0.32 -2.0
1,132,561 + MPMX20_01075 0.38 -0.3
1,132,583 + MPMX20_01075 0.39 -0.6
1,132,618 + MPMX20_01075 0.41 -1.0
1,132,638 + MPMX20_01075 0.42 -2.4
1,132,638 + MPMX20_01075 0.42 +0.3
1,132,638 + MPMX20_01075 0.42 -2.4
1,132,669 + MPMX20_01075 0.43 -0.2
1,132,678 - MPMX20_01075 0.44 -0.8
1,132,740 + MPMX20_01075 0.47 +2.3
1,132,740 + MPMX20_01075 0.47 -2.4
1,132,740 + MPMX20_01075 0.47 -0.6

Or see this region's nucleotide sequence