Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00898 and MPMX20_00899 are separated by 0 nucleotides MPMX20_00899 and MPMX20_00900 are separated by 55 nucleotides MPMX20_00900 and MPMX20_00901 are separated by 132 nucleotides MPMX20_00901 and MPMX20_00902 are separated by 386 nucleotides
MPMX20_00898: MPMX20_00898 - hypothetical protein, at 946,750 to 947,466
_00898
MPMX20_00899: MPMX20_00899 - Ribonuclease HI, at 947,467 to 947,934
_00899
MPMX20_00900: MPMX20_00900 - DNA polymerase III subunit epsilon, at 947,990 to 948,730
_00900
MPMX20_00901: MPMX20_00901 - tRNA-Asp, at 948,863 to 948,939
_00901
MPMX20_00902: MPMX20_00902 - Glc operon transcriptional activator, at 949,326 to 950,045
_00902
Position (kb) 947
948
949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 947.143 kb on + strand, within MPMX20_00898 at 947.157 kb on + strand, within MPMX20_00898 at 947.178 kb on + strand, within MPMX20_00898 at 947.208 kb on + strand, within MPMX20_00898 at 947.216 kb on - strand, within MPMX20_00898 at 947.249 kb on + strand, within MPMX20_00898 at 947.311 kb on + strand, within MPMX20_00898 at 947.311 kb on + strand, within MPMX20_00898 at 947.314 kb on - strand, within MPMX20_00898 at 947.342 kb on + strand, within MPMX20_00898 at 947.349 kb on + strand, within MPMX20_00898 at 947.491 kb on + strand at 947.504 kb on + strand at 947.575 kb on - strand, within MPMX20_00899 at 947.576 kb on - strand, within MPMX20_00899 at 947.707 kb on - strand, within MPMX20_00899 at 947.785 kb on + strand, within MPMX20_00899 at 947.880 kb on + strand, within MPMX20_00899 at 947.903 kb on - strand at 947.996 kb on + strand at 947.996 kb on + strand at 948.967 kb on + strand at 948.980 kb on - strand at 949.343 kb on - strand at 949.374 kb on - strand at 949.410 kb on - strand, within MPMX20_00902 at 949.442 kb on + strand, within MPMX20_00902 at 949.450 kb on - strand, within MPMX20_00902 at 949.456 kb on + strand, within MPMX20_00902 at 949.516 kb on + strand, within MPMX20_00902 at 949.524 kb on - strand, within MPMX20_00902 at 949.550 kb on + strand, within MPMX20_00902 at 949.550 kb on + strand, within MPMX20_00902 at 949.632 kb on - strand, within MPMX20_00902 at 949.682 kb on + strand, within MPMX20_00902 at 949.687 kb on + strand, within MPMX20_00902 at 949.695 kb on - strand, within MPMX20_00902
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 947,143 + MPMX20_00898 0.55 +1.1 947,157 + MPMX20_00898 0.57 +0.9 947,178 + MPMX20_00898 0.60 -1.1 947,208 + MPMX20_00898 0.64 -3.0 947,216 - MPMX20_00898 0.65 -0.7 947,249 + MPMX20_00898 0.70 -1.4 947,311 + MPMX20_00898 0.78 -0.8 947,311 + MPMX20_00898 0.78 +0.3 947,314 - MPMX20_00898 0.79 -0.9 947,342 + MPMX20_00898 0.83 -0.8 947,349 + MPMX20_00898 0.84 +1.5 947,491 + -2.1 947,504 + +1.2 947,575 - MPMX20_00899 0.23 -0.5 947,576 - MPMX20_00899 0.23 -0.7 947,707 - MPMX20_00899 0.51 -0.5 947,785 + MPMX20_00899 0.68 +0.5 947,880 + MPMX20_00899 0.88 +0.8 947,903 - -0.1 947,996 + +2.5 947,996 + -0.1 948,967 + +0.0 948,980 - -2.6 949,343 - +0.3 949,374 - -0.9 949,410 - MPMX20_00902 0.12 -0.5 949,442 + MPMX20_00902 0.16 -2.9 949,450 - MPMX20_00902 0.17 -0.2 949,456 + MPMX20_00902 0.18 -0.6 949,516 + MPMX20_00902 0.26 +0.7 949,524 - MPMX20_00902 0.28 +0.2 949,550 + MPMX20_00902 0.31 +0.9 949,550 + MPMX20_00902 0.31 -0.5 949,632 - MPMX20_00902 0.42 +0.9 949,682 + MPMX20_00902 0.49 +4.2 949,687 + MPMX20_00902 0.50 -0.1 949,695 - MPMX20_00902 0.51 +1.1
Or see this region's nucleotide sequence