Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00880

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00878 and MPMX20_00879 are separated by 112 nucleotidesMPMX20_00879 and MPMX20_00880 overlap by 4 nucleotidesMPMX20_00880 and MPMX20_00881 are separated by 106 nucleotidesMPMX20_00881 and MPMX20_00882 are separated by 40 nucleotides MPMX20_00878: MPMX20_00878 - Proline--tRNA ligase, at 927,606 to 929,324 _00878 MPMX20_00879: MPMX20_00879 - tRNA (adenine(37)-N6)-methyltransferase, at 929,437 to 930,141 _00879 MPMX20_00880: MPMX20_00880 - Outer membrane lipoprotein RcsF, at 930,138 to 930,542 _00880 MPMX20_00881: MPMX20_00881 - D-methionine-binding lipoprotein MetQ, at 930,649 to 931,464 _00881 MPMX20_00882: MPMX20_00882 - D-methionine transport system permease protein MetI, at 931,505 to 932,158 _00882 Position (kb) 930 931Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 929.427 kb on - strandat 929.598 kb on + strand, within MPMX20_00879at 929.612 kb on + strand, within MPMX20_00879at 929.633 kb on + strand, within MPMX20_00879at 929.653 kb on - strand, within MPMX20_00879at 929.701 kb on + strand, within MPMX20_00879at 929.713 kb on + strand, within MPMX20_00879at 929.769 kb on + strand, within MPMX20_00879at 929.769 kb on + strand, within MPMX20_00879at 929.769 kb on + strand, within MPMX20_00879at 929.777 kb on - strand, within MPMX20_00879at 929.777 kb on - strand, within MPMX20_00879at 929.777 kb on - strand, within MPMX20_00879at 929.777 kb on - strand, within MPMX20_00879at 929.777 kb on - strand, within MPMX20_00879at 929.777 kb on - strand, within MPMX20_00879at 929.777 kb on - strand, within MPMX20_00879at 929.810 kb on - strand, within MPMX20_00879at 929.839 kb on + strand, within MPMX20_00879at 929.907 kb on + strand, within MPMX20_00879at 929.932 kb on - strand, within MPMX20_00879at 929.977 kb on - strand, within MPMX20_00879at 930.005 kb on + strand, within MPMX20_00879at 930.018 kb on - strand, within MPMX20_00879at 930.055 kb on + strand, within MPMX20_00879at 930.060 kb on + strand, within MPMX20_00879at 930.148 kb on + strandat 930.161 kb on - strandat 930.212 kb on + strand, within MPMX20_00880at 930.212 kb on + strand, within MPMX20_00880at 930.220 kb on - strand, within MPMX20_00880at 930.256 kb on + strand, within MPMX20_00880at 930.291 kb on + strand, within MPMX20_00880at 930.303 kb on + strand, within MPMX20_00880at 930.308 kb on + strand, within MPMX20_00880at 930.311 kb on - strand, within MPMX20_00880at 930.363 kb on + strand, within MPMX20_00880at 930.446 kb on + strand, within MPMX20_00880at 930.464 kb on - strand, within MPMX20_00880at 930.464 kb on - strand, within MPMX20_00880at 930.483 kb on + strand, within MPMX20_00880at 930.488 kb on + strand, within MPMX20_00880at 930.488 kb on + strand, within MPMX20_00880at 930.488 kb on + strand, within MPMX20_00880at 930.488 kb on + strand, within MPMX20_00880at 930.491 kb on - strand, within MPMX20_00880at 930.496 kb on - strand, within MPMX20_00880at 930.589 kb on - strandat 930.614 kb on - strandat 930.619 kb on - strandat 930.630 kb on + strandat 930.638 kb on - strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.721 kb on - strandat 930.837 kb on - strand, within MPMX20_00881at 930.868 kb on + strand, within MPMX20_00881at 930.889 kb on + strand, within MPMX20_00881at 930.906 kb on + strand, within MPMX20_00881at 930.906 kb on + strand, within MPMX20_00881at 930.978 kb on + strand, within MPMX20_00881at 931.005 kb on + strand, within MPMX20_00881at 931.013 kb on - strand, within MPMX20_00881at 931.035 kb on + strand, within MPMX20_00881at 931.068 kb on + strand, within MPMX20_00881at 931.076 kb on - strand, within MPMX20_00881at 931.117 kb on + strand, within MPMX20_00881at 931.117 kb on + strand, within MPMX20_00881at 931.138 kb on + strand, within MPMX20_00881at 931.139 kb on + strand, within MPMX20_00881at 931.139 kb on + strand, within MPMX20_00881at 931.139 kb on + strand, within MPMX20_00881at 931.147 kb on - strand, within MPMX20_00881at 931.147 kb on - strand, within MPMX20_00881at 931.158 kb on + strand, within MPMX20_00881at 931.166 kb on - strand, within MPMX20_00881at 931.191 kb on + strand, within MPMX20_00881at 931.199 kb on - strand, within MPMX20_00881at 931.204 kb on - strand, within MPMX20_00881at 931.229 kb on + strand, within MPMX20_00881at 931.230 kb on - strand, within MPMX20_00881at 931.297 kb on + strand, within MPMX20_00881at 931.338 kb on + strand, within MPMX20_00881at 931.350 kb on + strand, within MPMX20_00881at 931.397 kb on + strandat 931.415 kb on - strandat 931.434 kb on + strandat 931.465 kb on + strandat 931.473 kb on - strandat 931.473 kb on - strandat 931.493 kb on - strandat 931.497 kb on + strandat 931.520 kb on + strandat 931.521 kb on + strandat 931.539 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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929,427 - -0.2
929,598 + MPMX20_00879 0.23 +0.3
929,612 + MPMX20_00879 0.25 -0.1
929,633 + MPMX20_00879 0.28 +2.5
929,653 - MPMX20_00879 0.31 -1.0
929,701 + MPMX20_00879 0.37 -1.8
929,713 + MPMX20_00879 0.39 +0.0
929,769 + MPMX20_00879 0.47 +1.3
929,769 + MPMX20_00879 0.47 +0.8
929,769 + MPMX20_00879 0.47 -1.7
929,777 - MPMX20_00879 0.48 -0.3
929,777 - MPMX20_00879 0.48 +0.5
929,777 - MPMX20_00879 0.48 -0.7
929,777 - MPMX20_00879 0.48 -1.6
929,777 - MPMX20_00879 0.48 +1.5
929,777 - MPMX20_00879 0.48 +0.5
929,777 - MPMX20_00879 0.48 -1.9
929,810 - MPMX20_00879 0.53 +1.1
929,839 + MPMX20_00879 0.57 +1.2
929,907 + MPMX20_00879 0.67 -1.8
929,932 - MPMX20_00879 0.70 -2.2
929,977 - MPMX20_00879 0.77 +0.8
930,005 + MPMX20_00879 0.81 +2.2
930,018 - MPMX20_00879 0.82 -3.1
930,055 + MPMX20_00879 0.88 +2.5
930,060 + MPMX20_00879 0.88 -0.1
930,148 + +0.9
930,161 - +3.1
930,212 + MPMX20_00880 0.18 -0.4
930,212 + MPMX20_00880 0.18 +0.7
930,220 - MPMX20_00880 0.20 -0.1
930,256 + MPMX20_00880 0.29 +2.7
930,291 + MPMX20_00880 0.38 +0.2
930,303 + MPMX20_00880 0.41 +1.4
930,308 + MPMX20_00880 0.42 -0.7
930,311 - MPMX20_00880 0.43 -0.5
930,363 + MPMX20_00880 0.56 -1.4
930,446 + MPMX20_00880 0.76 -0.7
930,464 - MPMX20_00880 0.80 +1.8
930,464 - MPMX20_00880 0.80 +2.3
930,483 + MPMX20_00880 0.85 +0.5
930,488 + MPMX20_00880 0.86 +1.8
930,488 + MPMX20_00880 0.86 +2.2
930,488 + MPMX20_00880 0.86 +1.9
930,488 + MPMX20_00880 0.86 +3.8
930,491 - MPMX20_00880 0.87 +1.5
930,496 - MPMX20_00880 0.88 +1.4
930,589 - -0.9
930,614 - -0.7
930,619 - +0.2
930,630 + -0.3
930,638 - +0.0
930,655 + -0.9
930,655 + -1.4
930,655 + -1.0
930,655 + -0.1
930,655 + -0.7
930,655 + -0.8
930,655 + -2.3
930,663 - +1.5
930,663 - -1.0
930,663 - +0.8
930,663 - -1.2
930,663 - -0.7
930,663 - +1.0
930,663 - +0.1
930,663 - -0.1
930,663 - -1.5
930,663 - +0.1
930,663 - +0.7
930,663 - -1.9
930,721 - +1.9
930,837 - MPMX20_00881 0.23 -0.8
930,868 + MPMX20_00881 0.27 +0.9
930,889 + MPMX20_00881 0.29 -3.4
930,906 + MPMX20_00881 0.31 -1.2
930,906 + MPMX20_00881 0.31 +0.2
930,978 + MPMX20_00881 0.40 -0.8
931,005 + MPMX20_00881 0.44 +0.5
931,013 - MPMX20_00881 0.45 -1.0
931,035 + MPMX20_00881 0.47 +0.3
931,068 + MPMX20_00881 0.51 -0.0
931,076 - MPMX20_00881 0.52 +0.1
931,117 + MPMX20_00881 0.57 -0.2
931,117 + MPMX20_00881 0.57 -0.8
931,138 + MPMX20_00881 0.60 -0.7
931,139 + MPMX20_00881 0.60 -0.3
931,139 + MPMX20_00881 0.60 -0.5
931,139 + MPMX20_00881 0.60 -2.0
931,147 - MPMX20_00881 0.61 -1.4
931,147 - MPMX20_00881 0.61 -0.1
931,158 + MPMX20_00881 0.62 -0.1
931,166 - MPMX20_00881 0.63 -0.8
931,191 + MPMX20_00881 0.66 +2.5
931,199 - MPMX20_00881 0.67 -0.7
931,204 - MPMX20_00881 0.68 -0.0
931,229 + MPMX20_00881 0.71 -0.8
931,230 - MPMX20_00881 0.71 -2.4
931,297 + MPMX20_00881 0.79 -0.1
931,338 + MPMX20_00881 0.84 +2.5
931,350 + MPMX20_00881 0.86 -2.0
931,397 + -0.1
931,415 - +1.5
931,434 + -0.1
931,465 + +0.9
931,473 - +0.5
931,473 - +0.6
931,493 - -0.1
931,497 + -0.8
931,520 + -0.5
931,521 + +0.4
931,539 + +0.9

Or see this region's nucleotide sequence