Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00753 and MPMX20_00754 are separated by 128 nucleotides MPMX20_00754 and MPMX20_00755 are separated by 74 nucleotides MPMX20_00755 and MPMX20_00756 are separated by 52 nucleotides
MPMX20_00753: MPMX20_00753 - RNA polymerase-associated protein RapA, at 779,522 to 782,428
_00753
MPMX20_00754: MPMX20_00754 - DNA polymerase II, at 782,557 to 784,914
_00754
MPMX20_00755: MPMX20_00755 - L-ribulose-5-phosphate 4-epimerase AraD, at 784,989 to 785,684
_00755
MPMX20_00756: MPMX20_00756 - L-arabinose isomerase, at 785,737 to 787,239
_00756
Position (kb) 782
783
784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 781.566 kb on + strand, within MPMX20_00753 at 781.574 kb on - strand, within MPMX20_00753 at 781.597 kb on + strand, within MPMX20_00753 at 781.709 kb on + strand, within MPMX20_00753 at 781.717 kb on - strand, within MPMX20_00753 at 781.717 kb on - strand, within MPMX20_00753 at 781.717 kb on - strand, within MPMX20_00753 at 781.756 kb on + strand, within MPMX20_00753 at 781.756 kb on + strand, within MPMX20_00753 at 781.756 kb on + strand, within MPMX20_00753 at 781.769 kb on - strand, within MPMX20_00753 at 781.855 kb on - strand, within MPMX20_00753 at 781.886 kb on - strand, within MPMX20_00753 at 781.892 kb on + strand, within MPMX20_00753 at 781.900 kb on - strand, within MPMX20_00753 at 781.954 kb on + strand, within MPMX20_00753 at 781.963 kb on + strand, within MPMX20_00753 at 781.971 kb on - strand, within MPMX20_00753 at 782.004 kb on + strand, within MPMX20_00753 at 782.009 kb on + strand, within MPMX20_00753 at 782.017 kb on - strand, within MPMX20_00753 at 782.047 kb on + strand, within MPMX20_00753 at 782.110 kb on - strand, within MPMX20_00753 at 782.145 kb on + strand at 782.162 kb on + strand at 782.170 kb on - strand at 782.170 kb on - strand at 782.170 kb on - strand at 782.180 kb on - strand at 782.191 kb on + strand at 782.217 kb on + strand at 782.217 kb on + strand at 782.232 kb on - strand at 782.370 kb on - strand at 782.416 kb on + strand at 782.416 kb on + strand at 782.436 kb on - strand at 782.438 kb on + strand at 782.520 kb on + strand at 782.572 kb on - strand at 782.579 kb on + strand at 782.587 kb on - strand at 782.587 kb on - strand at 782.654 kb on - strand at 782.660 kb on + strand at 782.672 kb on + strand at 782.702 kb on - strand at 782.776 kb on - strand at 782.803 kb on - strand, within MPMX20_00754 at 782.917 kb on + strand, within MPMX20_00754 at 782.925 kb on - strand, within MPMX20_00754 at 782.940 kb on + strand, within MPMX20_00754 at 782.949 kb on + strand, within MPMX20_00754 at 782.957 kb on - strand, within MPMX20_00754 at 782.957 kb on - strand, within MPMX20_00754 at 783.002 kb on + strand, within MPMX20_00754 at 783.002 kb on + strand, within MPMX20_00754 at 783.038 kb on - strand, within MPMX20_00754 at 783.068 kb on + strand, within MPMX20_00754 at 783.078 kb on + strand, within MPMX20_00754 at 783.078 kb on + strand, within MPMX20_00754 at 783.078 kb on + strand, within MPMX20_00754 at 783.078 kb on + strand, within MPMX20_00754 at 783.078 kb on + strand, within MPMX20_00754 at 783.078 kb on + strand, within MPMX20_00754 at 783.081 kb on - strand, within MPMX20_00754 at 783.086 kb on - strand, within MPMX20_00754 at 783.143 kb on - strand, within MPMX20_00754 at 783.154 kb on - strand, within MPMX20_00754 at 783.156 kb on - strand, within MPMX20_00754 at 783.187 kb on - strand, within MPMX20_00754 at 783.245 kb on + strand, within MPMX20_00754 at 783.245 kb on + strand, within MPMX20_00754 at 783.245 kb on + strand, within MPMX20_00754 at 783.245 kb on + strand, within MPMX20_00754 at 783.253 kb on - strand, within MPMX20_00754 at 783.253 kb on - strand, within MPMX20_00754 at 783.253 kb on - strand, within MPMX20_00754 at 783.253 kb on - strand, within MPMX20_00754 at 783.253 kb on - strand, within MPMX20_00754 at 783.290 kb on + strand, within MPMX20_00754 at 783.298 kb on - strand, within MPMX20_00754 at 783.346 kb on - strand, within MPMX20_00754 at 783.358 kb on - strand, within MPMX20_00754 at 783.397 kb on + strand, within MPMX20_00754 at 783.405 kb on - strand, within MPMX20_00754 at 783.463 kb on + strand, within MPMX20_00754 at 783.472 kb on - strand, within MPMX20_00754 at 783.474 kb on + strand, within MPMX20_00754 at 783.474 kb on + strand, within MPMX20_00754 at 783.485 kb on + strand, within MPMX20_00754 at 783.485 kb on + strand, within MPMX20_00754 at 783.493 kb on - strand, within MPMX20_00754 at 783.493 kb on - strand, within MPMX20_00754 at 783.493 kb on - strand, within MPMX20_00754 at 783.493 kb on - strand, within MPMX20_00754 at 783.552 kb on + strand, within MPMX20_00754 at 783.552 kb on + strand, within MPMX20_00754 at 783.586 kb on + strand, within MPMX20_00754 at 783.636 kb on + strand, within MPMX20_00754 at 783.644 kb on - strand, within MPMX20_00754 at 783.644 kb on - strand, within MPMX20_00754 at 783.650 kb on - strand, within MPMX20_00754 at 783.652 kb on + strand, within MPMX20_00754 at 783.660 kb on - strand, within MPMX20_00754 at 783.668 kb on + strand, within MPMX20_00754 at 783.738 kb on + strand, within MPMX20_00754 at 783.738 kb on + strand, within MPMX20_00754 at 783.763 kb on + strand, within MPMX20_00754 at 783.771 kb on - strand, within MPMX20_00754 at 783.794 kb on - strand, within MPMX20_00754 at 783.811 kb on - strand, within MPMX20_00754 at 783.914 kb on - strand, within MPMX20_00754 at 784.011 kb on + strand, within MPMX20_00754 at 784.071 kb on + strand, within MPMX20_00754 at 784.071 kb on + strand, within MPMX20_00754 at 784.071 kb on + strand, within MPMX20_00754 at 784.071 kb on + strand, within MPMX20_00754 at 784.150 kb on - strand, within MPMX20_00754 at 784.221 kb on + strand, within MPMX20_00754 at 784.316 kb on + strand, within MPMX20_00754 at 784.377 kb on - strand, within MPMX20_00754 at 784.403 kb on - strand, within MPMX20_00754 at 784.403 kb on - strand, within MPMX20_00754 at 784.406 kb on + strand, within MPMX20_00754 at 784.409 kb on + strand, within MPMX20_00754 at 784.411 kb on + strand, within MPMX20_00754 at 784.411 kb on + strand, within MPMX20_00754 at 784.414 kb on - strand, within MPMX20_00754 at 784.414 kb on - strand, within MPMX20_00754 at 784.417 kb on - strand, within MPMX20_00754 at 784.417 kb on - strand, within MPMX20_00754 at 784.417 kb on - strand, within MPMX20_00754 at 784.419 kb on - strand, within MPMX20_00754 at 784.486 kb on - strand, within MPMX20_00754 at 784.513 kb on + strand, within MPMX20_00754 at 784.532 kb on + strand, within MPMX20_00754 at 784.537 kb on + strand, within MPMX20_00754 at 784.540 kb on - strand, within MPMX20_00754 at 784.540 kb on - strand, within MPMX20_00754 at 784.547 kb on + strand, within MPMX20_00754 at 784.547 kb on + strand, within MPMX20_00754 at 784.555 kb on - strand, within MPMX20_00754 at 784.555 kb on - strand, within MPMX20_00754 at 784.600 kb on - strand, within MPMX20_00754 at 784.626 kb on + strand, within MPMX20_00754 at 784.647 kb on + strand, within MPMX20_00754 at 784.670 kb on - strand, within MPMX20_00754 at 784.735 kb on + strand at 784.811 kb on - strand at 784.811 kb on - strand at 784.855 kb on + strand at 784.855 kb on + strand at 784.863 kb on - strand at 784.863 kb on - strand at 784.863 kb on - strand at 784.863 kb on - strand at 784.895 kb on - strand at 784.916 kb on - strand at 785.027 kb on + strand at 785.039 kb on - strand at 785.040 kb on - strand at 785.059 kb on + strand, within MPMX20_00755 at 785.110 kb on + strand, within MPMX20_00755 at 785.168 kb on - strand, within MPMX20_00755 at 785.176 kb on - strand, within MPMX20_00755 at 785.196 kb on + strand, within MPMX20_00755 at 785.196 kb on + strand, within MPMX20_00755 at 785.279 kb on + strand, within MPMX20_00755 at 785.306 kb on - strand, within MPMX20_00755 at 785.348 kb on + strand, within MPMX20_00755 at 785.397 kb on + strand, within MPMX20_00755 at 785.397 kb on + strand, within MPMX20_00755 at 785.397 kb on + strand, within MPMX20_00755 at 785.400 kb on + strand, within MPMX20_00755 at 785.405 kb on - strand, within MPMX20_00755 at 785.405 kb on - strand, within MPMX20_00755 at 785.428 kb on + strand, within MPMX20_00755 at 785.436 kb on - strand, within MPMX20_00755 at 785.488 kb on + strand, within MPMX20_00755 at 785.539 kb on + strand, within MPMX20_00755 at 785.547 kb on - strand, within MPMX20_00755 at 785.593 kb on + strand, within MPMX20_00755 at 785.593 kb on + strand, within MPMX20_00755 at 785.601 kb on - strand, within MPMX20_00755 at 785.604 kb on + strand, within MPMX20_00755 at 785.605 kb on + strand, within MPMX20_00755 at 785.657 kb on + strand at 785.660 kb on + strand at 785.691 kb on - strand at 785.699 kb on + strand at 785.720 kb on + strand at 785.728 kb on + strand at 785.728 kb on - strand at 785.728 kb on - strand at 785.736 kb on - strand at 785.760 kb on - strand at 785.760 kb on - strand at 785.831 kb on - strand at 785.865 kb on + strand at 785.868 kb on - strand at 785.886 kb on - strand at 785.886 kb on - strand at 785.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 781,566 + MPMX20_00753 0.70 +2.1 781,574 - MPMX20_00753 0.71 +2.5 781,597 + MPMX20_00753 0.71 -0.1 781,709 + MPMX20_00753 0.75 -0.8 781,717 - MPMX20_00753 0.76 -0.7 781,717 - MPMX20_00753 0.76 -1.4 781,717 - MPMX20_00753 0.76 -0.7 781,756 + MPMX20_00753 0.77 -1.3 781,756 + MPMX20_00753 0.77 -0.9 781,756 + MPMX20_00753 0.77 +2.5 781,769 - MPMX20_00753 0.77 -1.1 781,855 - MPMX20_00753 0.80 -1.4 781,886 - MPMX20_00753 0.81 -0.8 781,892 + MPMX20_00753 0.82 -0.5 781,900 - MPMX20_00753 0.82 -2.8 781,954 + MPMX20_00753 0.84 -1.2 781,963 + MPMX20_00753 0.84 -1.5 781,971 - MPMX20_00753 0.84 +1.0 782,004 + MPMX20_00753 0.85 -1.8 782,009 + MPMX20_00753 0.86 -2.5 782,017 - MPMX20_00753 0.86 +0.4 782,047 + MPMX20_00753 0.87 +0.1 782,110 - MPMX20_00753 0.89 +0.2 782,145 + +0.2 782,162 + +0.7 782,170 - +0.5 782,170 - -1.0 782,170 - -1.3 782,180 - -1.5 782,191 + +1.8 782,217 + -0.1 782,217 + -1.7 782,232 - +0.5 782,370 - +0.9 782,416 + -1.6 782,416 + -0.0 782,436 - +0.9 782,438 + -2.4 782,520 + -1.5 782,572 - +0.9 782,579 + +0.9 782,587 - +0.5 782,587 - +2.0 782,654 - +3.1 782,660 + +0.5 782,672 + +1.5 782,702 - -0.7 782,776 - -0.5 782,803 - MPMX20_00754 0.10 -0.1 782,917 + MPMX20_00754 0.15 -0.1 782,925 - MPMX20_00754 0.16 -2.3 782,940 + MPMX20_00754 0.16 +0.4 782,949 + MPMX20_00754 0.17 +0.5 782,957 - MPMX20_00754 0.17 -1.8 782,957 - MPMX20_00754 0.17 +1.2 783,002 + MPMX20_00754 0.19 +1.3 783,002 + MPMX20_00754 0.19 -0.3 783,038 - MPMX20_00754 0.20 +1.8 783,068 + MPMX20_00754 0.22 -0.2 783,078 + MPMX20_00754 0.22 +1.5 783,078 + MPMX20_00754 0.22 +0.3 783,078 + MPMX20_00754 0.22 -0.1 783,078 + MPMX20_00754 0.22 -0.3 783,078 + MPMX20_00754 0.22 -0.4 783,078 + MPMX20_00754 0.22 -0.8 783,081 - MPMX20_00754 0.22 -1.6 783,086 - MPMX20_00754 0.22 -1.4 783,143 - MPMX20_00754 0.25 +0.5 783,154 - MPMX20_00754 0.25 -0.1 783,156 - MPMX20_00754 0.25 -0.0 783,187 - MPMX20_00754 0.27 -0.1 783,245 + MPMX20_00754 0.29 -0.3 783,245 + MPMX20_00754 0.29 -1.1 783,245 + MPMX20_00754 0.29 +0.4 783,245 + MPMX20_00754 0.29 -0.7 783,253 - MPMX20_00754 0.30 +1.3 783,253 - MPMX20_00754 0.30 +0.3 783,253 - MPMX20_00754 0.30 -0.6 783,253 - MPMX20_00754 0.30 +0.3 783,253 - MPMX20_00754 0.30 +1.5 783,290 + MPMX20_00754 0.31 -0.4 783,298 - MPMX20_00754 0.31 +0.0 783,346 - MPMX20_00754 0.33 +0.9 783,358 - MPMX20_00754 0.34 -2.1 783,397 + MPMX20_00754 0.36 +0.5 783,405 - MPMX20_00754 0.36 -0.7 783,463 + MPMX20_00754 0.38 -0.7 783,472 - MPMX20_00754 0.39 -3.0 783,474 + MPMX20_00754 0.39 -1.8 783,474 + MPMX20_00754 0.39 -1.2 783,485 + MPMX20_00754 0.39 -1.2 783,485 + MPMX20_00754 0.39 +0.1 783,493 - MPMX20_00754 0.40 -2.3 783,493 - MPMX20_00754 0.40 -0.0 783,493 - MPMX20_00754 0.40 -0.5 783,493 - MPMX20_00754 0.40 -0.0 783,552 + MPMX20_00754 0.42 -1.4 783,552 + MPMX20_00754 0.42 -0.8 783,586 + MPMX20_00754 0.44 +0.5 783,636 + MPMX20_00754 0.46 -0.3 783,644 - MPMX20_00754 0.46 -1.8 783,644 - MPMX20_00754 0.46 -1.0 783,650 - MPMX20_00754 0.46 +0.4 783,652 + MPMX20_00754 0.46 +0.5 783,660 - MPMX20_00754 0.47 -1.1 783,668 + MPMX20_00754 0.47 -0.8 783,738 + MPMX20_00754 0.50 -1.4 783,738 + MPMX20_00754 0.50 -0.1 783,763 + MPMX20_00754 0.51 -0.3 783,771 - MPMX20_00754 0.51 -1.2 783,794 - MPMX20_00754 0.52 +1.6 783,811 - MPMX20_00754 0.53 +0.9 783,914 - MPMX20_00754 0.58 -1.6 784,011 + MPMX20_00754 0.62 -1.7 784,071 + MPMX20_00754 0.64 -1.1 784,071 + MPMX20_00754 0.64 +2.2 784,071 + MPMX20_00754 0.64 -0.3 784,071 + MPMX20_00754 0.64 -1.8 784,150 - MPMX20_00754 0.68 -0.9 784,221 + MPMX20_00754 0.71 -0.5 784,316 + MPMX20_00754 0.75 +0.5 784,377 - MPMX20_00754 0.77 +0.1 784,403 - MPMX20_00754 0.78 -0.1 784,403 - MPMX20_00754 0.78 +0.3 784,406 + MPMX20_00754 0.78 +0.7 784,409 + MPMX20_00754 0.79 -0.3 784,411 + MPMX20_00754 0.79 +0.4 784,411 + MPMX20_00754 0.79 -1.8 784,414 - MPMX20_00754 0.79 -0.1 784,414 - MPMX20_00754 0.79 -1.5 784,417 - MPMX20_00754 0.79 -0.1 784,417 - MPMX20_00754 0.79 -1.0 784,417 - MPMX20_00754 0.79 +0.5 784,419 - MPMX20_00754 0.79 +0.4 784,486 - MPMX20_00754 0.82 -0.8 784,513 + MPMX20_00754 0.83 -2.1 784,532 + MPMX20_00754 0.84 +1.5 784,537 + MPMX20_00754 0.84 +1.1 784,540 - MPMX20_00754 0.84 -0.2 784,540 - MPMX20_00754 0.84 +0.6 784,547 + MPMX20_00754 0.84 +0.2 784,547 + MPMX20_00754 0.84 -1.0 784,555 - MPMX20_00754 0.85 -2.6 784,555 - MPMX20_00754 0.85 -1.4 784,600 - MPMX20_00754 0.87 +0.4 784,626 + MPMX20_00754 0.88 +1.3 784,647 + MPMX20_00754 0.89 -0.1 784,670 - MPMX20_00754 0.90 +0.3 784,735 + +2.7 784,811 - +0.1 784,811 - +0.1 784,855 + -0.1 784,855 + +1.1 784,863 - +0.5 784,863 - -1.4 784,863 - +0.3 784,863 - -2.4 784,895 - +0.8 784,916 - -0.2 785,027 + -0.9 785,039 - -0.4 785,040 - +2.5 785,059 + MPMX20_00755 0.10 -1.1 785,110 + MPMX20_00755 0.17 -2.4 785,168 - MPMX20_00755 0.26 -0.1 785,176 - MPMX20_00755 0.27 -1.5 785,196 + MPMX20_00755 0.30 -2.7 785,196 + MPMX20_00755 0.30 -0.1 785,279 + MPMX20_00755 0.42 +1.2 785,306 - MPMX20_00755 0.46 +2.3 785,348 + MPMX20_00755 0.52 -0.4 785,397 + MPMX20_00755 0.59 +0.3 785,397 + MPMX20_00755 0.59 -0.3 785,397 + MPMX20_00755 0.59 +2.7 785,400 + MPMX20_00755 0.59 +0.5 785,405 - MPMX20_00755 0.60 -1.6 785,405 - MPMX20_00755 0.60 +0.5 785,428 + MPMX20_00755 0.63 +0.6 785,436 - MPMX20_00755 0.64 +0.0 785,488 + MPMX20_00755 0.72 -1.5 785,539 + MPMX20_00755 0.79 -0.2 785,547 - MPMX20_00755 0.80 +1.1 785,593 + MPMX20_00755 0.87 -1.1 785,593 + MPMX20_00755 0.87 -0.5 785,601 - MPMX20_00755 0.88 +2.5 785,604 + MPMX20_00755 0.88 +0.1 785,605 + MPMX20_00755 0.89 +1.3 785,657 + +0.2 785,660 + +1.1 785,691 - +2.6 785,699 + -1.2 785,720 + +1.5 785,728 + -0.2 785,728 - +1.8 785,728 - +1.3 785,736 - -1.6 785,760 - +0.2 785,760 - -0.3 785,831 - +0.7 785,865 + +0.2 785,868 - -0.4 785,886 - -1.0 785,886 - +1.5 785,886 - +0.4
Or see this region's nucleotide sequence