Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00670

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00669 and MPMX20_00670 are separated by 102 nucleotidesMPMX20_00670 and MPMX20_00671 overlap by 32 nucleotidesMPMX20_00671 and MPMX20_00672 are separated by 19 nucleotides MPMX20_00669: MPMX20_00669 - Ribosomal RNA small subunit methyltransferase C, at 688,512 to 689,540 _00669 MPMX20_00670: MPMX20_00670 - DNA polymerase III subunit psi, at 689,643 to 690,056 _00670 MPMX20_00671: MPMX20_00671 - [Ribosomal protein S18]-alanine N-acetyltransferase, at 690,025 to 690,468 _00671 MPMX20_00672: MPMX20_00672 - Pyrimidine 5'-nucleotidase YjjG, at 690,488 to 691,165 _00672 Position (kb) 689 690 691Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 688.659 kb on + strand, within MPMX20_00669at 688.659 kb on + strand, within MPMX20_00669at 688.713 kb on + strand, within MPMX20_00669at 688.831 kb on - strand, within MPMX20_00669at 688.868 kb on + strand, within MPMX20_00669at 688.876 kb on - strand, within MPMX20_00669at 688.876 kb on - strand, within MPMX20_00669at 688.924 kb on - strand, within MPMX20_00669at 688.935 kb on + strand, within MPMX20_00669at 688.935 kb on + strand, within MPMX20_00669at 688.994 kb on + strand, within MPMX20_00669at 688.994 kb on + strand, within MPMX20_00669at 688.994 kb on + strand, within MPMX20_00669at 689.002 kb on - strand, within MPMX20_00669at 689.003 kb on - strand, within MPMX20_00669at 689.044 kb on + strand, within MPMX20_00669at 689.051 kb on + strand, within MPMX20_00669at 689.059 kb on - strand, within MPMX20_00669at 689.120 kb on - strand, within MPMX20_00669at 689.125 kb on - strand, within MPMX20_00669at 689.161 kb on - strand, within MPMX20_00669at 689.169 kb on + strand, within MPMX20_00669at 689.177 kb on - strand, within MPMX20_00669at 689.199 kb on + strand, within MPMX20_00669at 689.294 kb on + strand, within MPMX20_00669at 689.325 kb on + strand, within MPMX20_00669at 689.328 kb on - strand, within MPMX20_00669at 689.336 kb on - strand, within MPMX20_00669at 689.381 kb on - strand, within MPMX20_00669at 689.400 kb on - strand, within MPMX20_00669at 689.402 kb on - strand, within MPMX20_00669at 689.406 kb on - strand, within MPMX20_00669at 689.415 kb on + strand, within MPMX20_00669at 689.423 kb on - strand, within MPMX20_00669at 689.425 kb on - strand, within MPMX20_00669at 689.427 kb on + strand, within MPMX20_00669at 689.427 kb on + strand, within MPMX20_00669at 689.435 kb on - strand, within MPMX20_00669at 689.448 kb on + strandat 689.461 kb on - strandat 689.471 kb on + strandat 689.497 kb on + strandat 689.505 kb on + strandat 689.518 kb on - strandat 689.573 kb on + strandat 689.592 kb on + strandat 689.620 kb on + strandat 689.628 kb on - strandat 689.628 kb on - strandat 689.829 kb on - strand, within MPMX20_00670at 690.050 kb on + strandat 690.058 kb on - strandat 690.058 kb on - strandat 690.074 kb on + strand, within MPMX20_00671at 690.198 kb on + strand, within MPMX20_00671at 690.222 kb on + strand, within MPMX20_00671at 690.222 kb on + strand, within MPMX20_00671at 690.222 kb on + strand, within MPMX20_00671at 690.222 kb on + strand, within MPMX20_00671at 690.230 kb on - strand, within MPMX20_00671at 690.230 kb on - strand, within MPMX20_00671at 690.247 kb on + strand, within MPMX20_00671at 690.274 kb on - strand, within MPMX20_00671at 690.334 kb on - strand, within MPMX20_00671at 690.334 kb on - strand, within MPMX20_00671at 690.334 kb on - strand, within MPMX20_00671at 690.334 kb on - strand, within MPMX20_00671at 690.334 kb on - strand, within MPMX20_00671at 690.372 kb on - strand, within MPMX20_00671at 690.382 kb on - strand, within MPMX20_00671at 690.419 kb on + strand, within MPMX20_00671at 690.419 kb on + strand, within MPMX20_00671at 690.427 kb on - strandat 690.444 kb on + strandat 690.529 kb on + strandat 690.601 kb on + strand, within MPMX20_00672at 690.609 kb on + strand, within MPMX20_00672at 690.694 kb on + strand, within MPMX20_00672at 690.702 kb on - strand, within MPMX20_00672at 690.723 kb on - strand, within MPMX20_00672at 690.753 kb on - strand, within MPMX20_00672at 690.753 kb on - strand, within MPMX20_00672at 690.851 kb on - strand, within MPMX20_00672at 690.884 kb on - strand, within MPMX20_00672at 690.915 kb on + strand, within MPMX20_00672at 690.920 kb on - strand, within MPMX20_00672at 690.920 kb on - strand, within MPMX20_00672at 690.920 kb on - strand, within MPMX20_00672at 690.923 kb on - strand, within MPMX20_00672at 690.923 kb on - strand, within MPMX20_00672at 691.025 kb on - strand, within MPMX20_00672

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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688,659 + MPMX20_00669 0.14 +0.2
688,659 + MPMX20_00669 0.14 +0.8
688,713 + MPMX20_00669 0.20 +1.5
688,831 - MPMX20_00669 0.31 +1.5
688,868 + MPMX20_00669 0.35 -0.2
688,876 - MPMX20_00669 0.35 -0.9
688,876 - MPMX20_00669 0.35 -0.9
688,924 - MPMX20_00669 0.40 -0.3
688,935 + MPMX20_00669 0.41 +1.0
688,935 + MPMX20_00669 0.41 -1.3
688,994 + MPMX20_00669 0.47 -1.6
688,994 + MPMX20_00669 0.47 -0.8
688,994 + MPMX20_00669 0.47 -0.7
689,002 - MPMX20_00669 0.48 +0.6
689,003 - MPMX20_00669 0.48 +0.1
689,044 + MPMX20_00669 0.52 +1.9
689,051 + MPMX20_00669 0.52 +0.5
689,059 - MPMX20_00669 0.53 -0.6
689,120 - MPMX20_00669 0.59 -1.3
689,125 - MPMX20_00669 0.60 -0.3
689,161 - MPMX20_00669 0.63 -0.6
689,169 + MPMX20_00669 0.64 +0.2
689,177 - MPMX20_00669 0.65 -1.4
689,199 + MPMX20_00669 0.67 -0.1
689,294 + MPMX20_00669 0.76 -2.1
689,325 + MPMX20_00669 0.79 -2.3
689,328 - MPMX20_00669 0.79 -0.1
689,336 - MPMX20_00669 0.80 +0.9
689,381 - MPMX20_00669 0.84 +0.7
689,400 - MPMX20_00669 0.86 -0.9
689,402 - MPMX20_00669 0.86 -2.2
689,406 - MPMX20_00669 0.87 -1.2
689,415 + MPMX20_00669 0.88 -0.3
689,423 - MPMX20_00669 0.89 -2.8
689,425 - MPMX20_00669 0.89 -0.9
689,427 + MPMX20_00669 0.89 +0.5
689,427 + MPMX20_00669 0.89 +0.9
689,435 - MPMX20_00669 0.90 -0.1
689,448 + -0.5
689,461 - +0.9
689,471 + -1.6
689,497 + -0.3
689,505 + -0.1
689,518 - +0.5
689,573 + -0.7
689,592 + -1.6
689,620 + -0.6
689,628 - +0.7
689,628 - -1.1
689,829 - MPMX20_00670 0.45 +1.5
690,050 + +2.5
690,058 - -2.1
690,058 - -1.0
690,074 + MPMX20_00671 0.11 -2.3
690,198 + MPMX20_00671 0.39 +0.1
690,222 + MPMX20_00671 0.44 +0.5
690,222 + MPMX20_00671 0.44 +0.7
690,222 + MPMX20_00671 0.44 -0.9
690,222 + MPMX20_00671 0.44 +1.5
690,230 - MPMX20_00671 0.46 -0.3
690,230 - MPMX20_00671 0.46 +1.1
690,247 + MPMX20_00671 0.50 -1.6
690,274 - MPMX20_00671 0.56 +0.4
690,334 - MPMX20_00671 0.70 +1.5
690,334 - MPMX20_00671 0.70 +3.9
690,334 - MPMX20_00671 0.70 -0.8
690,334 - MPMX20_00671 0.70 +2.3
690,334 - MPMX20_00671 0.70 +2.1
690,372 - MPMX20_00671 0.78 -1.1
690,382 - MPMX20_00671 0.80 -0.8
690,419 + MPMX20_00671 0.89 -0.5
690,419 + MPMX20_00671 0.89 +0.2
690,427 - +0.5
690,444 + +0.5
690,529 + -1.6
690,601 + MPMX20_00672 0.17 -0.8
690,609 + MPMX20_00672 0.18 +0.7
690,694 + MPMX20_00672 0.30 +0.3
690,702 - MPMX20_00672 0.32 -0.6
690,723 - MPMX20_00672 0.35 +2.5
690,753 - MPMX20_00672 0.39 +0.4
690,753 - MPMX20_00672 0.39 +0.1
690,851 - MPMX20_00672 0.54 +2.3
690,884 - MPMX20_00672 0.58 -1.2
690,915 + MPMX20_00672 0.63 +0.2
690,920 - MPMX20_00672 0.64 +0.9
690,920 - MPMX20_00672 0.64 +0.7
690,920 - MPMX20_00672 0.64 +1.2
690,923 - MPMX20_00672 0.64 +0.9
690,923 - MPMX20_00672 0.64 -2.3
691,025 - MPMX20_00672 0.79 +1.0

Or see this region's nucleotide sequence