Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00649 and MPMX20_00650 are separated by 269 nucleotides MPMX20_00650 and MPMX20_00651 are separated by 85 nucleotides MPMX20_00651 and MPMX20_00652 overlap by 4 nucleotides MPMX20_00652 and MPMX20_00653 are separated by 148 nucleotides
MPMX20_00649: MPMX20_00649 - Phosphoglycerol transferase I, at 674,031 to 676,322
_00649
MPMX20_00650: MPMX20_00650 - hypothetical protein, at 676,592 to 677,074
_00650
MPMX20_00651: MPMX20_00651 - DNA replication protein DnaC, at 677,160 to 677,897
_00651
MPMX20_00652: MPMX20_00652 - Primosomal protein 1, at 677,894 to 678,439
_00652
MPMX20_00653: MPMX20_00653 - Organic hydroperoxide resistance protein OhrB, at 678,588 to 679,016
_00653
Position (kb) 677
678 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 676.190 kb on + strand at 676.231 kb on - strand at 676.270 kb on - strand at 676.277 kb on - strand at 676.285 kb on - strand at 676.285 kb on - strand at 676.308 kb on + strand at 676.316 kb on - strand at 676.316 kb on - strand at 676.324 kb on + strand at 676.324 kb on + strand at 676.324 kb on + strand at 676.329 kb on + strand at 676.331 kb on - strand at 676.353 kb on - strand at 676.568 kb on + strand at 676.627 kb on + strand at 676.643 kb on - strand, within MPMX20_00650 at 676.667 kb on + strand, within MPMX20_00650 at 676.667 kb on - strand, within MPMX20_00650 at 676.769 kb on - strand, within MPMX20_00650 at 676.784 kb on - strand, within MPMX20_00650 at 676.884 kb on + strand, within MPMX20_00650 at 677.004 kb on + strand, within MPMX20_00650 at 677.039 kb on + strand at 677.049 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.129 kb on - strand at 677.129 kb on - strand at 677.129 kb on - strand at 677.129 kb on - strand at 677.129 kb on - strand at 677.129 kb on - strand at 677.129 kb on - strand at 677.129 kb on - strand at 678.444 kb on - strand at 678.444 kb on - strand at 678.444 kb on - strand at 678.450 kb on - strand at 678.460 kb on - strand at 678.482 kb on + strand at 678.482 kb on + strand at 678.514 kb on - strand at 678.522 kb on - strand at 678.574 kb on - strand at 678.656 kb on + strand, within MPMX20_00653 at 678.757 kb on - strand, within MPMX20_00653 at 678.847 kb on - strand, within MPMX20_00653 at 678.856 kb on + strand, within MPMX20_00653 at 678.861 kb on - strand, within MPMX20_00653 at 678.866 kb on + strand, within MPMX20_00653 at 678.871 kb on + strand, within MPMX20_00653 at 678.871 kb on + strand, within MPMX20_00653 at 678.874 kb on - strand, within MPMX20_00653 at 678.874 kb on - strand, within MPMX20_00653 at 678.874 kb on - strand, within MPMX20_00653 at 678.879 kb on - strand, within MPMX20_00653
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 676,190 + +0.5 676,231 - -2.3 676,270 - -1.2 676,277 - +0.5 676,285 - +1.1 676,285 - -0.3 676,308 + -0.1 676,316 - -0.5 676,316 - -0.3 676,324 + +1.3 676,324 + +0.2 676,324 + -0.4 676,329 + +0.9 676,331 - +0.6 676,353 - +2.1 676,568 + -0.5 676,627 + +0.9 676,643 - MPMX20_00650 0.11 -0.7 676,667 + MPMX20_00650 0.16 -0.0 676,667 - MPMX20_00650 0.16 +0.2 676,769 - MPMX20_00650 0.37 +0.5 676,784 - MPMX20_00650 0.40 +0.5 676,884 + MPMX20_00650 0.60 +0.3 677,004 + MPMX20_00650 0.85 -1.1 677,039 + -3.2 677,049 + -0.9 677,121 + -0.2 677,121 + +2.3 677,121 + -1.1 677,121 + +1.7 677,121 + +2.5 677,121 + -1.0 677,121 + -0.5 677,121 + +0.3 677,121 + +0.4 677,121 + +0.2 677,121 + -1.0 677,121 + -1.4 677,121 + -0.7 677,121 + -0.1 677,121 + -0.7 677,121 + -0.8 677,121 + +0.8 677,121 + +0.9 677,129 - +2.6 677,129 - -0.5 677,129 - +0.2 677,129 - -1.6 677,129 - -1.4 677,129 - -1.2 677,129 - +0.7 677,129 - +1.0 678,444 - -1.1 678,444 - -0.1 678,444 - -0.2 678,450 - -0.9 678,460 - +0.9 678,482 + -0.1 678,482 + +0.9 678,514 - -0.2 678,522 - -1.3 678,574 - -0.3 678,656 + MPMX20_00653 0.16 -0.7 678,757 - MPMX20_00653 0.39 -2.1 678,847 - MPMX20_00653 0.60 -1.8 678,856 + MPMX20_00653 0.62 -0.1 678,861 - MPMX20_00653 0.64 -1.4 678,866 + MPMX20_00653 0.65 -0.5 678,871 + MPMX20_00653 0.66 +1.9 678,871 + MPMX20_00653 0.66 -0.9 678,874 - MPMX20_00653 0.67 -1.1 678,874 - MPMX20_00653 0.67 +1.4 678,874 - MPMX20_00653 0.67 -0.8 678,879 - MPMX20_00653 0.68 -0.7
Or see this region's nucleotide sequence