Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00426 and MPMX20_00427 are separated by 55 nucleotides MPMX20_00427 and MPMX20_00428 are separated by 108 nucleotides MPMX20_00428 and MPMX20_00429 are separated by 38 nucleotides MPMX20_00429 and MPMX20_00430 are separated by 262 nucleotides MPMX20_00430 and MPMX20_00431 overlap by 4 nucleotides
MPMX20_00426: MPMX20_00426 - Elongation factor P, at 442,511 to 443,077
_00426
MPMX20_00427: MPMX20_00427 - hypothetical protein, at 443,133 to 443,267
_00427
MPMX20_00428: MPMX20_00428 - hypothetical protein, at 443,376 to 443,522
_00428
MPMX20_00429: MPMX20_00429 - Transcriptional regulatory protein RcsA, at 443,561 to 444,160
_00429
MPMX20_00430: MPMX20_00430 - Guanidinium exporter, at 444,423 to 444,740
_00430
MPMX20_00431: MPMX20_00431 - Outer membrane lipoprotein Blc, at 444,737 to 445,267
_00431
Position (kb) 443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 443.164 kb on + strand, within MPMX20_00427 at 443.169 kb on + strand, within MPMX20_00427 at 443.174 kb on + strand, within MPMX20_00427 at 443.174 kb on + strand, within MPMX20_00427 at 443.174 kb on + strand, within MPMX20_00427 at 443.174 kb on + strand, within MPMX20_00427 at 443.174 kb on + strand, within MPMX20_00427 at 443.174 kb on + strand, within MPMX20_00427 at 443.174 kb on + strand, within MPMX20_00427 at 443.182 kb on - strand, within MPMX20_00427 at 443.182 kb on - strand, within MPMX20_00427 at 443.182 kb on - strand, within MPMX20_00427 at 443.182 kb on - strand, within MPMX20_00427 at 443.182 kb on - strand, within MPMX20_00427 at 443.195 kb on + strand, within MPMX20_00427 at 443.197 kb on + strand, within MPMX20_00427 at 443.203 kb on - strand, within MPMX20_00427 at 443.262 kb on + strand at 443.262 kb on + strand at 443.341 kb on + strand at 443.344 kb on - strand at 443.349 kb on - strand at 443.371 kb on + strand at 443.409 kb on + strand, within MPMX20_00428 at 443.436 kb on + strand, within MPMX20_00428 at 443.446 kb on - strand, within MPMX20_00428 at 443.446 kb on - strand, within MPMX20_00428 at 443.446 kb on - strand, within MPMX20_00428 at 443.463 kb on - strand, within MPMX20_00428 at 443.506 kb on + strand, within MPMX20_00428 at 443.514 kb on - strand at 443.516 kb on + strand at 443.534 kb on + strand at 443.539 kb on + strand at 443.550 kb on + strand at 443.642 kb on + strand, within MPMX20_00429 at 443.642 kb on + strand, within MPMX20_00429 at 443.642 kb on + strand, within MPMX20_00429 at 443.642 kb on + strand, within MPMX20_00429 at 443.650 kb on - strand, within MPMX20_00429 at 443.650 kb on - strand, within MPMX20_00429 at 443.650 kb on - strand, within MPMX20_00429 at 443.651 kb on - strand, within MPMX20_00429 at 443.669 kb on + strand, within MPMX20_00429 at 443.696 kb on + strand, within MPMX20_00429 at 443.700 kb on + strand, within MPMX20_00429 at 443.709 kb on - strand, within MPMX20_00429 at 443.722 kb on - strand, within MPMX20_00429 at 443.764 kb on + strand, within MPMX20_00429 at 443.764 kb on + strand, within MPMX20_00429 at 443.772 kb on + strand, within MPMX20_00429 at 443.772 kb on - strand, within MPMX20_00429 at 443.803 kb on - strand, within MPMX20_00429 at 443.808 kb on + strand, within MPMX20_00429 at 443.808 kb on + strand, within MPMX20_00429 at 443.808 kb on + strand, within MPMX20_00429 at 443.808 kb on + strand, within MPMX20_00429 at 443.808 kb on + strand, within MPMX20_00429 at 443.816 kb on - strand, within MPMX20_00429 at 443.816 kb on - strand, within MPMX20_00429 at 443.826 kb on - strand, within MPMX20_00429 at 443.826 kb on - strand, within MPMX20_00429 at 443.832 kb on + strand, within MPMX20_00429 at 443.834 kb on + strand, within MPMX20_00429 at 443.842 kb on + strand, within MPMX20_00429 at 443.842 kb on + strand, within MPMX20_00429 at 443.850 kb on - strand, within MPMX20_00429 at 443.850 kb on - strand, within MPMX20_00429 at 443.888 kb on + strand, within MPMX20_00429 at 443.888 kb on + strand, within MPMX20_00429 at 443.896 kb on - strand, within MPMX20_00429 at 443.896 kb on - strand, within MPMX20_00429 at 443.896 kb on - strand, within MPMX20_00429 at 443.896 kb on - strand, within MPMX20_00429 at 443.920 kb on + strand, within MPMX20_00429 at 443.946 kb on - strand, within MPMX20_00429 at 443.946 kb on - strand, within MPMX20_00429 at 443.946 kb on - strand, within MPMX20_00429 at 443.953 kb on + strand, within MPMX20_00429 at 443.962 kb on + strand, within MPMX20_00429 at 443.968 kb on - strand, within MPMX20_00429 at 443.970 kb on - strand, within MPMX20_00429 at 443.971 kb on - strand, within MPMX20_00429 at 443.974 kb on + strand, within MPMX20_00429 at 443.974 kb on + strand, within MPMX20_00429 at 443.974 kb on + strand, within MPMX20_00429 at 443.974 kb on + strand, within MPMX20_00429 at 443.974 kb on + strand, within MPMX20_00429 at 443.974 kb on + strand, within MPMX20_00429 at 443.982 kb on - strand, within MPMX20_00429 at 443.982 kb on - strand, within MPMX20_00429 at 443.982 kb on - strand, within MPMX20_00429 at 443.989 kb on + strand, within MPMX20_00429 at 443.989 kb on + strand, within MPMX20_00429 at 443.989 kb on + strand, within MPMX20_00429 at 443.989 kb on + strand, within MPMX20_00429 at 443.994 kb on + strand, within MPMX20_00429 at 443.994 kb on + strand, within MPMX20_00429 at 443.994 kb on + strand, within MPMX20_00429 at 443.994 kb on + strand, within MPMX20_00429 at 443.994 kb on + strand, within MPMX20_00429 at 443.994 kb on + strand, within MPMX20_00429 at 443.994 kb on + strand, within MPMX20_00429 at 443.997 kb on - strand, within MPMX20_00429 at 443.997 kb on - strand, within MPMX20_00429 at 443.997 kb on - strand, within MPMX20_00429 at 443.997 kb on - strand, within MPMX20_00429 at 443.997 kb on - strand, within MPMX20_00429 at 444.002 kb on - strand, within MPMX20_00429 at 444.002 kb on - strand, within MPMX20_00429 at 444.036 kb on - strand, within MPMX20_00429 at 444.067 kb on - strand, within MPMX20_00429 at 444.106 kb on + strand at 444.114 kb on - strand at 444.122 kb on + strand at 444.184 kb on - strand at 444.200 kb on + strand at 444.205 kb on + strand at 444.224 kb on + strand at 444.242 kb on + strand at 444.242 kb on + strand at 444.250 kb on - strand at 444.250 kb on - strand at 444.250 kb on - strand at 444.250 kb on - strand at 444.271 kb on + strand at 444.287 kb on + strand at 444.290 kb on - strand at 444.344 kb on - strand at 444.361 kb on + strand at 444.370 kb on - strand at 444.377 kb on - strand at 444.390 kb on + strand at 444.430 kb on + strand at 444.463 kb on - strand, within MPMX20_00430 at 444.477 kb on + strand, within MPMX20_00430 at 444.477 kb on + strand, within MPMX20_00430 at 444.478 kb on + strand, within MPMX20_00430 at 444.485 kb on - strand, within MPMX20_00430 at 444.485 kb on - strand, within MPMX20_00430 at 444.485 kb on - strand, within MPMX20_00430 at 444.496 kb on + strand, within MPMX20_00430 at 444.510 kb on + strand, within MPMX20_00430 at 444.520 kb on + strand, within MPMX20_00430 at 444.520 kb on + strand, within MPMX20_00430 at 444.520 kb on + strand, within MPMX20_00430 at 444.520 kb on + strand, within MPMX20_00430 at 444.520 kb on + strand, within MPMX20_00430 at 444.520 kb on + strand, within MPMX20_00430 at 444.520 kb on + strand, within MPMX20_00430 at 444.520 kb on + strand, within MPMX20_00430 at 444.528 kb on - strand, within MPMX20_00430 at 444.528 kb on - strand, within MPMX20_00430 at 444.528 kb on - strand, within MPMX20_00430 at 444.528 kb on - strand, within MPMX20_00430 at 444.528 kb on - strand, within MPMX20_00430 at 444.528 kb on - strand, within MPMX20_00430 at 444.528 kb on - strand, within MPMX20_00430 at 444.528 kb on - strand, within MPMX20_00430 at 444.592 kb on - strand, within MPMX20_00430 at 444.592 kb on - strand, within MPMX20_00430 at 444.592 kb on - strand, within MPMX20_00430 at 444.594 kb on + strand, within MPMX20_00430 at 444.698 kb on + strand, within MPMX20_00430 at 444.698 kb on + strand, within MPMX20_00430 at 444.702 kb on - strand, within MPMX20_00430 at 444.725 kb on + strand at 444.748 kb on + strand at 444.748 kb on + strand at 444.748 kb on + strand at 444.756 kb on - strand at 444.756 kb on - strand at 444.756 kb on - strand at 444.756 kb on - strand at 444.756 kb on - strand at 444.758 kb on + strand at 444.772 kb on + strand at 444.772 kb on + strand at 444.780 kb on - strand at 444.780 kb on - strand at 444.829 kb on + strand, within MPMX20_00431 at 444.837 kb on - strand, within MPMX20_00431 at 444.837 kb on - strand, within MPMX20_00431 at 444.860 kb on + strand, within MPMX20_00431 at 444.881 kb on - strand, within MPMX20_00431 at 444.883 kb on + strand, within MPMX20_00431 at 444.891 kb on - strand, within MPMX20_00431 at 444.903 kb on - strand, within MPMX20_00431 at 444.959 kb on - strand, within MPMX20_00431 at 444.984 kb on + strand, within MPMX20_00431 at 445.048 kb on + strand, within MPMX20_00431 at 445.048 kb on + strand, within MPMX20_00431 at 445.091 kb on - strand, within MPMX20_00431 at 445.091 kb on - strand, within MPMX20_00431 at 445.091 kb on - strand, within MPMX20_00431 at 445.101 kb on - strand, within MPMX20_00431 at 445.103 kb on - strand, within MPMX20_00431 at 445.143 kb on - strand, within MPMX20_00431
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 443,164 + MPMX20_00427 0.23 -0.4 443,169 + MPMX20_00427 0.27 -1.0 443,174 + MPMX20_00427 0.30 -0.4 443,174 + MPMX20_00427 0.30 -2.2 443,174 + MPMX20_00427 0.30 -1.0 443,174 + MPMX20_00427 0.30 +0.8 443,174 + MPMX20_00427 0.30 -0.7 443,174 + MPMX20_00427 0.30 -2.1 443,174 + MPMX20_00427 0.30 -0.5 443,182 - MPMX20_00427 0.36 -0.5 443,182 - MPMX20_00427 0.36 -1.2 443,182 - MPMX20_00427 0.36 -1.1 443,182 - MPMX20_00427 0.36 +0.2 443,182 - MPMX20_00427 0.36 +0.1 443,195 + MPMX20_00427 0.46 -1.2 443,197 + MPMX20_00427 0.47 -0.5 443,203 - MPMX20_00427 0.52 +0.9 443,262 + +0.4 443,262 + -0.1 443,341 + +1.6 443,344 - +1.5 443,349 - +2.5 443,371 + -1.5 443,409 + MPMX20_00428 0.22 -1.4 443,436 + MPMX20_00428 0.41 +1.0 443,446 - MPMX20_00428 0.48 -1.0 443,446 - MPMX20_00428 0.48 +2.5 443,446 - MPMX20_00428 0.48 -0.7 443,463 - MPMX20_00428 0.59 -1.2 443,506 + MPMX20_00428 0.88 +2.5 443,514 - +0.1 443,516 + -1.3 443,534 + +1.6 443,539 + +1.5 443,550 + -1.0 443,642 + MPMX20_00429 0.14 +2.6 443,642 + MPMX20_00429 0.14 +0.5 443,642 + MPMX20_00429 0.14 +1.3 443,642 + MPMX20_00429 0.14 +3.2 443,650 - MPMX20_00429 0.15 +1.5 443,650 - MPMX20_00429 0.15 +0.5 443,650 - MPMX20_00429 0.15 -1.4 443,651 - MPMX20_00429 0.15 +1.1 443,669 + MPMX20_00429 0.18 +1.5 443,696 + MPMX20_00429 0.23 -0.5 443,700 + MPMX20_00429 0.23 +0.2 443,709 - MPMX20_00429 0.25 -0.8 443,722 - MPMX20_00429 0.27 -0.2 443,764 + MPMX20_00429 0.34 +0.5 443,764 + MPMX20_00429 0.34 +2.0 443,772 + MPMX20_00429 0.35 -2.2 443,772 - MPMX20_00429 0.35 +2.6 443,803 - MPMX20_00429 0.40 +0.7 443,808 + MPMX20_00429 0.41 -1.1 443,808 + MPMX20_00429 0.41 +2.0 443,808 + MPMX20_00429 0.41 +0.1 443,808 + MPMX20_00429 0.41 +1.7 443,808 + MPMX20_00429 0.41 +0.9 443,816 - MPMX20_00429 0.42 -1.5 443,816 - MPMX20_00429 0.42 +2.3 443,826 - MPMX20_00429 0.44 +1.2 443,826 - MPMX20_00429 0.44 +4.4 443,832 + MPMX20_00429 0.45 -3.1 443,834 + MPMX20_00429 0.46 +2.9 443,842 + MPMX20_00429 0.47 -0.4 443,842 + MPMX20_00429 0.47 +0.9 443,850 - MPMX20_00429 0.48 -2.0 443,850 - MPMX20_00429 0.48 +2.4 443,888 + MPMX20_00429 0.55 +1.5 443,888 + MPMX20_00429 0.55 +1.5 443,896 - MPMX20_00429 0.56 +2.9 443,896 - MPMX20_00429 0.56 +1.7 443,896 - MPMX20_00429 0.56 +0.1 443,896 - MPMX20_00429 0.56 -1.1 443,920 + MPMX20_00429 0.60 -0.4 443,946 - MPMX20_00429 0.64 -1.5 443,946 - MPMX20_00429 0.64 -0.7 443,946 - MPMX20_00429 0.64 +1.0 443,953 + MPMX20_00429 0.65 +1.7 443,962 + MPMX20_00429 0.67 +2.3 443,968 - MPMX20_00429 0.68 +4.9 443,970 - MPMX20_00429 0.68 -1.6 443,971 - MPMX20_00429 0.68 -0.2 443,974 + MPMX20_00429 0.69 +1.2 443,974 + MPMX20_00429 0.69 -1.4 443,974 + MPMX20_00429 0.69 +0.7 443,974 + MPMX20_00429 0.69 -0.9 443,974 + MPMX20_00429 0.69 -0.1 443,974 + MPMX20_00429 0.69 +0.5 443,982 - MPMX20_00429 0.70 -1.5 443,982 - MPMX20_00429 0.70 -2.4 443,982 - MPMX20_00429 0.70 +0.9 443,989 + MPMX20_00429 0.71 +0.8 443,989 + MPMX20_00429 0.71 +3.1 443,989 + MPMX20_00429 0.71 +1.0 443,989 + MPMX20_00429 0.71 +1.5 443,994 + MPMX20_00429 0.72 +0.8 443,994 + MPMX20_00429 0.72 -0.7 443,994 + MPMX20_00429 0.72 +2.9 443,994 + MPMX20_00429 0.72 +1.2 443,994 + MPMX20_00429 0.72 +0.1 443,994 + MPMX20_00429 0.72 +2.3 443,994 + MPMX20_00429 0.72 -0.4 443,997 - MPMX20_00429 0.73 -1.2 443,997 - MPMX20_00429 0.73 -1.9 443,997 - MPMX20_00429 0.73 +1.6 443,997 - MPMX20_00429 0.73 -0.1 443,997 - MPMX20_00429 0.73 +0.7 444,002 - MPMX20_00429 0.73 -1.3 444,002 - MPMX20_00429 0.73 -0.5 444,036 - MPMX20_00429 0.79 +2.6 444,067 - MPMX20_00429 0.84 -1.0 444,106 + -1.5 444,114 - +0.0 444,122 + +2.1 444,184 - +0.6 444,200 + +1.5 444,205 + -0.1 444,224 + +1.2 444,242 + -2.2 444,242 + -3.0 444,250 - -1.9 444,250 - -1.5 444,250 - -0.0 444,250 - -2.1 444,271 + +1.7 444,287 + -0.4 444,290 - -2.1 444,344 - +2.5 444,361 + -0.1 444,370 - -0.5 444,377 - -1.2 444,390 + -2.2 444,430 + -1.1 444,463 - MPMX20_00430 0.13 +0.5 444,477 + MPMX20_00430 0.17 -2.8 444,477 + MPMX20_00430 0.17 +0.1 444,478 + MPMX20_00430 0.17 +0.8 444,485 - MPMX20_00430 0.19 -0.3 444,485 - MPMX20_00430 0.19 +0.5 444,485 - MPMX20_00430 0.19 -1.4 444,496 + MPMX20_00430 0.23 -1.4 444,510 + MPMX20_00430 0.27 -0.8 444,520 + MPMX20_00430 0.31 -1.2 444,520 + MPMX20_00430 0.31 +0.5 444,520 + MPMX20_00430 0.31 -0.0 444,520 + MPMX20_00430 0.31 +1.0 444,520 + MPMX20_00430 0.31 +1.3 444,520 + MPMX20_00430 0.31 -1.9 444,520 + MPMX20_00430 0.31 +1.2 444,520 + MPMX20_00430 0.31 -1.0 444,528 - MPMX20_00430 0.33 -1.6 444,528 - MPMX20_00430 0.33 +0.5 444,528 - MPMX20_00430 0.33 -0.5 444,528 - MPMX20_00430 0.33 -0.4 444,528 - MPMX20_00430 0.33 -0.9 444,528 - MPMX20_00430 0.33 -1.6 444,528 - MPMX20_00430 0.33 +0.9 444,528 - MPMX20_00430 0.33 +1.5 444,592 - MPMX20_00430 0.53 +0.0 444,592 - MPMX20_00430 0.53 +1.1 444,592 - MPMX20_00430 0.53 +0.3 444,594 + MPMX20_00430 0.54 +0.5 444,698 + MPMX20_00430 0.86 +0.2 444,698 + MPMX20_00430 0.86 +0.6 444,702 - MPMX20_00430 0.88 +0.9 444,725 + +0.8 444,748 + -0.1 444,748 + -0.2 444,748 + +2.5 444,756 - -2.0 444,756 - +0.8 444,756 - +2.0 444,756 - -1.0 444,756 - +1.6 444,758 + -1.0 444,772 + -0.7 444,772 + -0.7 444,780 - +0.5 444,780 - +0.9 444,829 + MPMX20_00431 0.17 -0.7 444,837 - MPMX20_00431 0.19 +0.5 444,837 - MPMX20_00431 0.19 +2.5 444,860 + MPMX20_00431 0.23 +0.5 444,881 - MPMX20_00431 0.27 -1.5 444,883 + MPMX20_00431 0.27 +1.7 444,891 - MPMX20_00431 0.29 -2.0 444,903 - MPMX20_00431 0.31 -0.6 444,959 - MPMX20_00431 0.42 +3.3 444,984 + MPMX20_00431 0.47 -0.1 445,048 + MPMX20_00431 0.59 -0.1 445,048 + MPMX20_00431 0.59 -0.9 445,091 - MPMX20_00431 0.67 -0.4 445,091 - MPMX20_00431 0.67 -2.4 445,091 - MPMX20_00431 0.67 -1.5 445,101 - MPMX20_00431 0.69 +1.7 445,103 - MPMX20_00431 0.69 -1.2 445,143 - MPMX20_00431 0.76 +1.9
Or see this region's nucleotide sequence