Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00315

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00312 and MPMX20_00313 are separated by 9 nucleotidesMPMX20_00313 and MPMX20_00314 overlap by 8 nucleotidesMPMX20_00314 and MPMX20_00315 overlap by 1 nucleotidesMPMX20_00315 and MPMX20_00316 overlap by 4 nucleotidesMPMX20_00316 and MPMX20_00317 are separated by 9 nucleotides MPMX20_00312: MPMX20_00312 - Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase, at 333,567 to 334,325 _00312 MPMX20_00313: MPMX20_00313 - Aminoalkylphosphonate N-acetyltransferase, at 334,335 to 334,769 _00313 MPMX20_00314: MPMX20_00314 - Ribose 1,5-bisphosphate phosphokinase PhnN, at 334,762 to 335,310 _00314 MPMX20_00315: MPMX20_00315 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase, at 335,310 to 336,446 _00315 MPMX20_00316: MPMX20_00316 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL, at 336,443 to 337,123 _00316 MPMX20_00317: MPMX20_00317 - Putative phosphonates utilization ATP-binding protein PhnK, at 337,133 to 337,888 _00317 Position (kb) 335 336 337Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 334.314 kb on + strandat 334.341 kb on - strandat 334.341 kb on - strandat 334.367 kb on + strandat 334.374 kb on + strandat 334.375 kb on - strandat 334.375 kb on - strandat 334.399 kb on + strand, within MPMX20_00313at 334.418 kb on - strand, within MPMX20_00313at 334.436 kb on + strand, within MPMX20_00313at 334.476 kb on - strand, within MPMX20_00313at 334.481 kb on - strand, within MPMX20_00313at 334.493 kb on + strand, within MPMX20_00313at 334.493 kb on + strand, within MPMX20_00313at 334.493 kb on + strand, within MPMX20_00313at 334.493 kb on + strand, within MPMX20_00313at 334.501 kb on - strand, within MPMX20_00313at 334.501 kb on - strand, within MPMX20_00313at 334.501 kb on - strand, within MPMX20_00313at 334.501 kb on - strand, within MPMX20_00313at 334.501 kb on - strand, within MPMX20_00313at 334.501 kb on - strand, within MPMX20_00313at 334.557 kb on + strand, within MPMX20_00313at 334.570 kb on - strand, within MPMX20_00313at 334.595 kb on + strand, within MPMX20_00313at 334.603 kb on - strand, within MPMX20_00313at 334.639 kb on - strand, within MPMX20_00313at 334.680 kb on + strand, within MPMX20_00313at 334.842 kb on + strand, within MPMX20_00314at 334.842 kb on + strand, within MPMX20_00314at 334.850 kb on - strand, within MPMX20_00314at 334.850 kb on - strand, within MPMX20_00314at 334.891 kb on - strand, within MPMX20_00314at 334.944 kb on + strand, within MPMX20_00314at 334.944 kb on - strand, within MPMX20_00314at 334.952 kb on - strand, within MPMX20_00314at 334.952 kb on - strand, within MPMX20_00314at 334.956 kb on + strand, within MPMX20_00314at 334.982 kb on + strand, within MPMX20_00314at 334.982 kb on + strand, within MPMX20_00314at 334.982 kb on + strand, within MPMX20_00314at 334.990 kb on - strand, within MPMX20_00314at 335.003 kb on + strand, within MPMX20_00314at 335.015 kb on - strand, within MPMX20_00314at 335.024 kb on - strand, within MPMX20_00314at 335.055 kb on + strand, within MPMX20_00314at 335.069 kb on - strand, within MPMX20_00314at 335.081 kb on - strand, within MPMX20_00314at 335.163 kb on - strand, within MPMX20_00314at 335.178 kb on - strand, within MPMX20_00314at 335.209 kb on - strand, within MPMX20_00314at 335.209 kb on - strand, within MPMX20_00314at 335.209 kb on - strand, within MPMX20_00314at 335.209 kb on - strand, within MPMX20_00314at 335.224 kb on - strand, within MPMX20_00314at 335.241 kb on + strand, within MPMX20_00314at 335.263 kb on + strandat 335.263 kb on + strandat 335.271 kb on - strandat 335.271 kb on - strandat 335.271 kb on - strandat 335.283 kb on - strandat 335.299 kb on - strandat 335.332 kb on + strandat 335.362 kb on + strandat 335.362 kb on + strandat 335.362 kb on + strandat 335.370 kb on - strandat 335.370 kb on - strandat 335.467 kb on + strand, within MPMX20_00315at 335.477 kb on + strand, within MPMX20_00315at 335.548 kb on + strand, within MPMX20_00315at 335.556 kb on - strand, within MPMX20_00315at 335.559 kb on + strand, within MPMX20_00315at 335.607 kb on - strand, within MPMX20_00315at 335.656 kb on - strand, within MPMX20_00315at 335.741 kb on + strand, within MPMX20_00315at 335.781 kb on - strand, within MPMX20_00315at 335.932 kb on + strand, within MPMX20_00315at 335.942 kb on + strand, within MPMX20_00315at 335.945 kb on - strand, within MPMX20_00315at 335.963 kb on - strand, within MPMX20_00315at 335.966 kb on + strand, within MPMX20_00315at 335.971 kb on + strand, within MPMX20_00315at 336.014 kb on - strand, within MPMX20_00315at 336.018 kb on + strand, within MPMX20_00315at 336.044 kb on + strand, within MPMX20_00315at 336.044 kb on + strand, within MPMX20_00315at 336.105 kb on - strand, within MPMX20_00315at 336.173 kb on - strand, within MPMX20_00315at 336.228 kb on + strand, within MPMX20_00315at 336.345 kb on + strandat 336.377 kb on - strandat 336.425 kb on + strandat 336.433 kb on - strandat 336.534 kb on + strand, within MPMX20_00316at 336.542 kb on - strand, within MPMX20_00316at 336.542 kb on - strand, within MPMX20_00316at 336.561 kb on - strand, within MPMX20_00316at 336.572 kb on + strand, within MPMX20_00316at 336.685 kb on + strand, within MPMX20_00316at 336.760 kb on - strand, within MPMX20_00316at 336.776 kb on - strand, within MPMX20_00316at 336.800 kb on - strand, within MPMX20_00316at 336.802 kb on + strand, within MPMX20_00316at 336.810 kb on - strand, within MPMX20_00316at 336.892 kb on + strand, within MPMX20_00316at 336.932 kb on - strand, within MPMX20_00316at 336.976 kb on - strand, within MPMX20_00316at 337.012 kb on - strand, within MPMX20_00316at 337.017 kb on + strand, within MPMX20_00316at 337.033 kb on + strand, within MPMX20_00316at 337.049 kb on + strand, within MPMX20_00316at 337.049 kb on + strand, within MPMX20_00316at 337.049 kb on + strand, within MPMX20_00316at 337.049 kb on + strand, within MPMX20_00316at 337.049 kb on + strand, within MPMX20_00316at 337.057 kb on - strandat 337.094 kb on + strandat 337.102 kb on - strandat 337.118 kb on + strandat 337.118 kb on + strandat 337.118 kb on + strandat 337.126 kb on - strandat 337.129 kb on - strandat 337.156 kb on - strandat 337.279 kb on - strand, within MPMX20_00317at 337.323 kb on - strand, within MPMX20_00317at 337.323 kb on - strand, within MPMX20_00317at 337.366 kb on + strand, within MPMX20_00317at 337.368 kb on - strand, within MPMX20_00317at 337.384 kb on - strand, within MPMX20_00317

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
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334,314 + -0.3
334,341 - -0.5
334,341 - +0.7
334,367 + -1.0
334,374 + -0.3
334,375 - -1.4
334,375 - +2.0
334,399 + MPMX20_00313 0.15 +0.6
334,418 - MPMX20_00313 0.19 -1.0
334,436 + MPMX20_00313 0.23 +0.9
334,476 - MPMX20_00313 0.32 -0.6
334,481 - MPMX20_00313 0.34 -1.9
334,493 + MPMX20_00313 0.36 -1.6
334,493 + MPMX20_00313 0.36 -2.0
334,493 + MPMX20_00313 0.36 +1.8
334,493 + MPMX20_00313 0.36 -0.0
334,501 - MPMX20_00313 0.38 -0.2
334,501 - MPMX20_00313 0.38 +0.2
334,501 - MPMX20_00313 0.38 -1.8
334,501 - MPMX20_00313 0.38 +1.1
334,501 - MPMX20_00313 0.38 -0.9
334,501 - MPMX20_00313 0.38 -1.2
334,557 + MPMX20_00313 0.51 -0.4
334,570 - MPMX20_00313 0.54 -0.1
334,595 + MPMX20_00313 0.60 -0.0
334,603 - MPMX20_00313 0.62 -0.4
334,639 - MPMX20_00313 0.70 -0.9
334,680 + MPMX20_00313 0.79 -0.3
334,842 + MPMX20_00314 0.15 +0.9
334,842 + MPMX20_00314 0.15 +0.1
334,850 - MPMX20_00314 0.16 +0.4
334,850 - MPMX20_00314 0.16 +0.5
334,891 - MPMX20_00314 0.23 -1.4
334,944 + MPMX20_00314 0.33 +0.2
334,944 - MPMX20_00314 0.33 +0.4
334,952 - MPMX20_00314 0.35 +0.3
334,952 - MPMX20_00314 0.35 +0.1
334,956 + MPMX20_00314 0.35 +0.7
334,982 + MPMX20_00314 0.40 -0.4
334,982 + MPMX20_00314 0.40 -1.4
334,982 + MPMX20_00314 0.40 +0.2
334,990 - MPMX20_00314 0.42 +1.4
335,003 + MPMX20_00314 0.44 -2.6
335,015 - MPMX20_00314 0.46 +0.8
335,024 - MPMX20_00314 0.48 +0.4
335,055 + MPMX20_00314 0.53 +0.5
335,069 - MPMX20_00314 0.56 -1.0
335,081 - MPMX20_00314 0.58 -0.4
335,163 - MPMX20_00314 0.73 -1.6
335,178 - MPMX20_00314 0.76 +0.9
335,209 - MPMX20_00314 0.81 -1.1
335,209 - MPMX20_00314 0.81 +0.7
335,209 - MPMX20_00314 0.81 +0.4
335,209 - MPMX20_00314 0.81 -1.3
335,224 - MPMX20_00314 0.84 -2.2
335,241 + MPMX20_00314 0.87 +1.1
335,263 + -1.5
335,263 + -1.4
335,271 - +0.7
335,271 - -0.0
335,271 - +1.0
335,283 - -1.6
335,299 - -2.5
335,332 + -0.3
335,362 + -1.0
335,362 + -3.1
335,362 + +1.4
335,370 - +0.1
335,370 - +1.3
335,467 + MPMX20_00315 0.14 +0.1
335,477 + MPMX20_00315 0.15 +0.9
335,548 + MPMX20_00315 0.21 +0.3
335,556 - MPMX20_00315 0.22 -1.1
335,559 + MPMX20_00315 0.22 +0.9
335,607 - MPMX20_00315 0.26 +1.4
335,656 - MPMX20_00315 0.30 -0.6
335,741 + MPMX20_00315 0.38 -0.4
335,781 - MPMX20_00315 0.41 +0.9
335,932 + MPMX20_00315 0.55 +1.4
335,942 + MPMX20_00315 0.56 +1.6
335,945 - MPMX20_00315 0.56 +0.3
335,963 - MPMX20_00315 0.57 +0.4
335,966 + MPMX20_00315 0.58 +0.6
335,971 + MPMX20_00315 0.58 -0.8
336,014 - MPMX20_00315 0.62 +0.9
336,018 + MPMX20_00315 0.62 -0.2
336,044 + MPMX20_00315 0.65 +0.7
336,044 + MPMX20_00315 0.65 +0.4
336,105 - MPMX20_00315 0.70 -0.1
336,173 - MPMX20_00315 0.76 -1.6
336,228 + MPMX20_00315 0.81 +0.0
336,345 + -0.4
336,377 - -0.6
336,425 + +1.9
336,433 - -2.4
336,534 + MPMX20_00316 0.13 -0.5
336,542 - MPMX20_00316 0.15 -1.8
336,542 - MPMX20_00316 0.15 -1.3
336,561 - MPMX20_00316 0.17 -0.7
336,572 + MPMX20_00316 0.19 -0.7
336,685 + MPMX20_00316 0.36 -0.1
336,760 - MPMX20_00316 0.47 +0.1
336,776 - MPMX20_00316 0.49 -0.7
336,800 - MPMX20_00316 0.52 -2.7
336,802 + MPMX20_00316 0.53 +1.1
336,810 - MPMX20_00316 0.54 -0.4
336,892 + MPMX20_00316 0.66 -0.6
336,932 - MPMX20_00316 0.72 +1.0
336,976 - MPMX20_00316 0.78 +1.1
337,012 - MPMX20_00316 0.84 -0.1
337,017 + MPMX20_00316 0.84 -0.4
337,033 + MPMX20_00316 0.87 +0.8
337,049 + MPMX20_00316 0.89 +1.0
337,049 + MPMX20_00316 0.89 -0.6
337,049 + MPMX20_00316 0.89 -1.9
337,049 + MPMX20_00316 0.89 +0.4
337,049 + MPMX20_00316 0.89 +0.9
337,057 - +0.4
337,094 + -0.2
337,102 - +1.1
337,118 + -1.9
337,118 + -0.8
337,118 + +0.3
337,126 - -2.2
337,129 - -1.3
337,156 - +1.1
337,279 - MPMX20_00317 0.19 +0.2
337,323 - MPMX20_00317 0.25 +0.9
337,323 - MPMX20_00317 0.25 +1.2
337,366 + MPMX20_00317 0.31 +2.4
337,368 - MPMX20_00317 0.31 -0.9
337,384 - MPMX20_00317 0.33 +0.3

Or see this region's nucleotide sequence