Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00184

Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00183 and MPMX20_00184 overlap by 32 nucleotidesMPMX20_00184 and MPMX20_00185 overlap by 23 nucleotidesMPMX20_00185 and MPMX20_00186 are separated by 162 nucleotides MPMX20_00183: MPMX20_00183 - Biotin sulfoxide reductase, at 190,057 to 192,384 _00183 MPMX20_00184: MPMX20_00184 - Peptidyl-lysine N-acetyltransferase YiaC, at 192,353 to 192,793 _00184 MPMX20_00185: MPMX20_00185 - DNA-3-methyladenine glycosylase 1, at 192,771 to 193,352 _00185 MPMX20_00186: MPMX20_00186 - hypothetical protein, at 193,515 to 194,213 _00186 Position (kb) 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 191.398 kb on - strand, within MPMX20_00183at 191.398 kb on - strand, within MPMX20_00183at 191.426 kb on - strand, within MPMX20_00183at 191.517 kb on + strand, within MPMX20_00183at 191.570 kb on + strand, within MPMX20_00183at 191.644 kb on + strand, within MPMX20_00183at 191.685 kb on + strand, within MPMX20_00183at 191.692 kb on + strand, within MPMX20_00183at 191.727 kb on + strand, within MPMX20_00183at 191.727 kb on + strand, within MPMX20_00183at 191.727 kb on + strand, within MPMX20_00183at 191.727 kb on + strand, within MPMX20_00183at 191.735 kb on - strand, within MPMX20_00183at 191.735 kb on - strand, within MPMX20_00183at 191.790 kb on - strand, within MPMX20_00183at 191.894 kb on + strand, within MPMX20_00183at 191.926 kb on - strand, within MPMX20_00183at 191.936 kb on + strand, within MPMX20_00183at 191.983 kb on - strand, within MPMX20_00183at 192.055 kb on + strand, within MPMX20_00183at 192.055 kb on + strand, within MPMX20_00183at 192.055 kb on + strand, within MPMX20_00183at 192.058 kb on - strand, within MPMX20_00183at 192.060 kb on + strand, within MPMX20_00183at 192.063 kb on - strand, within MPMX20_00183at 192.063 kb on - strand, within MPMX20_00183at 192.065 kb on + strand, within MPMX20_00183at 192.162 kb on + strandat 192.169 kb on - strandat 192.169 kb on - strandat 192.200 kb on + strandat 192.206 kb on + strandat 192.214 kb on - strandat 192.214 kb on - strandat 192.258 kb on + strandat 192.273 kb on - strandat 192.275 kb on + strandat 192.310 kb on + strandat 192.315 kb on + strandat 192.315 kb on + strandat 192.318 kb on - strandat 192.410 kb on - strand, within MPMX20_00184at 192.519 kb on + strand, within MPMX20_00184at 192.519 kb on + strand, within MPMX20_00184at 192.521 kb on + strand, within MPMX20_00184at 192.529 kb on + strand, within MPMX20_00184at 192.529 kb on - strand, within MPMX20_00184at 192.585 kb on + strand, within MPMX20_00184at 192.585 kb on + strand, within MPMX20_00184at 192.603 kb on - strand, within MPMX20_00184at 192.661 kb on + strand, within MPMX20_00184at 192.669 kb on - strand, within MPMX20_00184at 192.669 kb on - strand, within MPMX20_00184at 192.669 kb on - strand, within MPMX20_00184at 192.684 kb on - strand, within MPMX20_00184at 192.691 kb on + strand, within MPMX20_00184at 192.699 kb on - strand, within MPMX20_00184at 192.724 kb on + strand, within MPMX20_00184at 192.774 kb on - strandat 192.801 kb on + strandat 192.803 kb on - strandat 192.842 kb on + strand, within MPMX20_00185at 192.842 kb on + strand, within MPMX20_00185at 192.842 kb on + strand, within MPMX20_00185at 192.850 kb on - strand, within MPMX20_00185at 192.850 kb on - strand, within MPMX20_00185at 192.850 kb on - strand, within MPMX20_00185at 192.850 kb on - strand, within MPMX20_00185at 192.854 kb on + strand, within MPMX20_00185at 192.854 kb on + strand, within MPMX20_00185at 192.854 kb on + strand, within MPMX20_00185at 192.862 kb on - strand, within MPMX20_00185at 192.862 kb on - strand, within MPMX20_00185at 192.870 kb on - strand, within MPMX20_00185at 192.910 kb on + strand, within MPMX20_00185at 192.910 kb on + strand, within MPMX20_00185at 192.910 kb on + strand, within MPMX20_00185at 192.910 kb on + strand, within MPMX20_00185at 192.918 kb on - strand, within MPMX20_00185at 192.918 kb on - strand, within MPMX20_00185at 193.022 kb on + strand, within MPMX20_00185at 193.169 kb on + strand, within MPMX20_00185at 193.216 kb on - strand, within MPMX20_00185at 193.229 kb on + strand, within MPMX20_00185at 193.230 kb on + strand, within MPMX20_00185at 193.237 kb on - strand, within MPMX20_00185at 193.238 kb on + strand, within MPMX20_00185at 193.270 kb on - strand, within MPMX20_00185at 193.288 kb on + strand, within MPMX20_00185at 193.288 kb on + strand, within MPMX20_00185at 193.290 kb on + strand, within MPMX20_00185at 193.296 kb on - strandat 193.312 kb on + strandat 193.320 kb on - strandat 193.322 kb on + strandat 193.339 kb on + strandat 193.339 kb on + strandat 193.349 kb on + strandat 193.370 kb on - strandat 193.402 kb on + strandat 193.402 kb on + strandat 193.410 kb on - strandat 193.410 kb on - strandat 193.416 kb on + strandat 193.430 kb on + strandat 193.438 kb on - strandat 193.438 kb on - strandat 193.438 kb on - strandat 193.438 kb on - strandat 193.438 kb on - strandat 193.438 kb on - strandat 193.497 kb on - strandat 193.499 kb on + strandat 193.499 kb on + strandat 193.499 kb on + strandat 193.499 kb on + strandat 193.499 kb on + strandat 193.499 kb on + strandat 193.499 kb on + strandat 193.499 kb on + strandat 193.499 kb on + strandat 193.499 kb on + strandat 193.499 kb on + strandat 193.499 kb on + strandat 193.499 kb on + strandat 193.507 kb on - strandat 193.507 kb on - strandat 193.507 kb on - strandat 193.507 kb on - strandat 193.507 kb on - strandat 193.507 kb on - strandat 193.507 kb on - strandat 193.507 kb on - strandat 193.517 kb on - strandat 193.517 kb on - strandat 193.548 kb on + strandat 193.548 kb on - strandat 193.596 kb on + strand, within MPMX20_00186at 193.645 kb on - strand, within MPMX20_00186at 193.645 kb on - strand, within MPMX20_00186at 193.660 kb on + strand, within MPMX20_00186at 193.665 kb on - strand, within MPMX20_00186at 193.702 kb on - strand, within MPMX20_00186at 193.743 kb on - strand, within MPMX20_00186at 193.748 kb on - strand, within MPMX20_00186at 193.753 kb on - strand, within MPMX20_00186at 193.769 kb on + strand, within MPMX20_00186at 193.777 kb on - strand, within MPMX20_00186

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
remove
191,398 - MPMX20_00183 0.58 -0.9
191,398 - MPMX20_00183 0.58 -0.3
191,426 - MPMX20_00183 0.59 +0.3
191,517 + MPMX20_00183 0.63 +0.3
191,570 + MPMX20_00183 0.65 +0.5
191,644 + MPMX20_00183 0.68 +0.9
191,685 + MPMX20_00183 0.70 +1.5
191,692 + MPMX20_00183 0.70 +0.9
191,727 + MPMX20_00183 0.72 -1.4
191,727 + MPMX20_00183 0.72 +0.1
191,727 + MPMX20_00183 0.72 -0.9
191,727 + MPMX20_00183 0.72 -0.4
191,735 - MPMX20_00183 0.72 -1.0
191,735 - MPMX20_00183 0.72 +0.5
191,790 - MPMX20_00183 0.74 +1.9
191,894 + MPMX20_00183 0.79 -0.1
191,926 - MPMX20_00183 0.80 +0.7
191,936 + MPMX20_00183 0.81 -1.1
191,983 - MPMX20_00183 0.83 +0.9
192,055 + MPMX20_00183 0.86 -0.8
192,055 + MPMX20_00183 0.86 -1.2
192,055 + MPMX20_00183 0.86 +0.0
192,058 - MPMX20_00183 0.86 -0.5
192,060 + MPMX20_00183 0.86 -1.1
192,063 - MPMX20_00183 0.86 -0.5
192,063 - MPMX20_00183 0.86 -1.9
192,065 + MPMX20_00183 0.86 -0.5
192,162 + -0.1
192,169 - -2.7
192,169 - -1.2
192,200 + +2.5
192,206 + -0.3
192,214 - -2.3
192,214 - -0.2
192,258 + -1.3
192,273 - +0.2
192,275 + -1.1
192,310 + +0.6
192,315 + +1.0
192,315 + +0.3
192,318 - -0.9
192,410 - MPMX20_00184 0.13 -1.3
192,519 + MPMX20_00184 0.38 +0.1
192,519 + MPMX20_00184 0.38 +1.0
192,521 + MPMX20_00184 0.38 -1.0
192,529 + MPMX20_00184 0.40 -1.6
192,529 - MPMX20_00184 0.40 -0.8
192,585 + MPMX20_00184 0.53 -0.1
192,585 + MPMX20_00184 0.53 -0.3
192,603 - MPMX20_00184 0.57 +0.9
192,661 + MPMX20_00184 0.70 -0.6
192,669 - MPMX20_00184 0.72 -2.5
192,669 - MPMX20_00184 0.72 -0.3
192,669 - MPMX20_00184 0.72 -0.3
192,684 - MPMX20_00184 0.75 -0.3
192,691 + MPMX20_00184 0.77 -2.9
192,699 - MPMX20_00184 0.78 -0.9
192,724 + MPMX20_00184 0.84 -1.4
192,774 - -0.2
192,801 + +0.2
192,803 - -0.3
192,842 + MPMX20_00185 0.12 -0.0
192,842 + MPMX20_00185 0.12 -0.9
192,842 + MPMX20_00185 0.12 +2.5
192,850 - MPMX20_00185 0.14 -1.1
192,850 - MPMX20_00185 0.14 -0.4
192,850 - MPMX20_00185 0.14 +1.2
192,850 - MPMX20_00185 0.14 +0.3
192,854 + MPMX20_00185 0.14 +0.5
192,854 + MPMX20_00185 0.14 -0.8
192,854 + MPMX20_00185 0.14 +0.5
192,862 - MPMX20_00185 0.16 +0.9
192,862 - MPMX20_00185 0.16 +1.1
192,870 - MPMX20_00185 0.17 -1.0
192,910 + MPMX20_00185 0.24 +0.7
192,910 + MPMX20_00185 0.24 +0.1
192,910 + MPMX20_00185 0.24 +2.5
192,910 + MPMX20_00185 0.24 +1.1
192,918 - MPMX20_00185 0.25 +0.5
192,918 - MPMX20_00185 0.25 -1.4
193,022 + MPMX20_00185 0.43 +1.5
193,169 + MPMX20_00185 0.68 -0.1
193,216 - MPMX20_00185 0.76 -1.2
193,229 + MPMX20_00185 0.79 -1.2
193,230 + MPMX20_00185 0.79 +0.5
193,237 - MPMX20_00185 0.80 -0.4
193,238 + MPMX20_00185 0.80 +0.9
193,270 - MPMX20_00185 0.86 -2.3
193,288 + MPMX20_00185 0.89 -2.3
193,288 + MPMX20_00185 0.89 -0.3
193,290 + MPMX20_00185 0.89 -1.9
193,296 - +0.3
193,312 + +3.5
193,320 - +0.5
193,322 + +0.1
193,339 + +0.4
193,339 + -3.3
193,349 + +0.7
193,370 - +2.5
193,402 + +0.2
193,402 + +1.0
193,410 - -1.9
193,410 - -2.1
193,416 + +3.5
193,430 + -0.1
193,438 - -2.1
193,438 - -0.1
193,438 - +3.5
193,438 - +0.0
193,438 - -2.0
193,438 - -1.6
193,497 - -1.2
193,499 + -0.9
193,499 + -0.7
193,499 + +1.5
193,499 + -0.3
193,499 + +0.1
193,499 + -1.2
193,499 + +0.1
193,499 + -1.0
193,499 + -1.7
193,499 + +2.5
193,499 + -1.2
193,499 + +2.4
193,499 + -1.2
193,507 - +0.5
193,507 - -2.4
193,507 - -1.7
193,507 - -0.4
193,507 - +0.7
193,507 - +1.5
193,507 - +0.9
193,507 - -1.1
193,517 - +2.9
193,517 - -0.1
193,548 + -1.6
193,548 - -0.5
193,596 + MPMX20_00186 0.12 -1.2
193,645 - MPMX20_00186 0.19 -1.4
193,645 - MPMX20_00186 0.19 +2.1
193,660 + MPMX20_00186 0.21 -0.9
193,665 - MPMX20_00186 0.21 -1.0
193,702 - MPMX20_00186 0.27 -0.8
193,743 - MPMX20_00186 0.33 -0.7
193,748 - MPMX20_00186 0.33 -3.2
193,753 - MPMX20_00186 0.34 +0.9
193,769 + MPMX20_00186 0.36 +0.1
193,777 - MPMX20_00186 0.37 +2.1

Or see this region's nucleotide sequence