Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03396

Experiment: M9 plate, 1:1 coculture with Agromyces sp. SAI_196

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03395 and MPMX20_03396 are separated by 169 nucleotidesMPMX20_03396 and MPMX20_03397 are separated by 156 nucleotides MPMX20_03395: MPMX20_03395 - Dual-specificity RNA methyltransferase RlmN, at 3,576,082 to 3,577,248 _03395 MPMX20_03396: MPMX20_03396 - Nucleoside diphosphate kinase, at 3,577,418 to 3,577,849 _03396 MPMX20_03397: MPMX20_03397 - Penicillin-binding protein 1C, at 3,578,006 to 3,580,330 _03397 Position (kb) 3577 3578Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3576.418 kb on + strand, within MPMX20_03395at 3576.418 kb on + strand, within MPMX20_03395at 3576.426 kb on - strand, within MPMX20_03395at 3576.585 kb on - strand, within MPMX20_03395at 3576.609 kb on + strand, within MPMX20_03395at 3576.638 kb on - strand, within MPMX20_03395at 3576.638 kb on - strand, within MPMX20_03395at 3576.737 kb on - strand, within MPMX20_03395at 3576.776 kb on + strand, within MPMX20_03395at 3576.776 kb on + strand, within MPMX20_03395at 3576.776 kb on + strand, within MPMX20_03395at 3576.776 kb on + strand, within MPMX20_03395at 3576.776 kb on + strand, within MPMX20_03395at 3576.776 kb on + strand, within MPMX20_03395at 3576.776 kb on + strand, within MPMX20_03395at 3576.784 kb on - strand, within MPMX20_03395at 3576.784 kb on - strand, within MPMX20_03395at 3576.784 kb on - strand, within MPMX20_03395at 3576.795 kb on + strand, within MPMX20_03395at 3576.817 kb on + strand, within MPMX20_03395at 3576.870 kb on + strand, within MPMX20_03395at 3576.878 kb on + strand, within MPMX20_03395at 3576.881 kb on - strand, within MPMX20_03395at 3577.019 kb on + strand, within MPMX20_03395at 3577.033 kb on + strand, within MPMX20_03395at 3577.062 kb on + strand, within MPMX20_03395at 3577.102 kb on + strand, within MPMX20_03395at 3577.115 kb on - strand, within MPMX20_03395at 3577.165 kb on + strandat 3577.165 kb on + strandat 3577.169 kb on + strandat 3577.221 kb on + strandat 3577.229 kb on - strandat 3577.276 kb on - strandat 3577.282 kb on - strandat 3577.282 kb on - strandat 3577.282 kb on - strandat 3577.282 kb on - strandat 3577.323 kb on - strandat 3577.341 kb on - strandat 3577.343 kb on + strandat 3577.370 kb on - strandat 3577.372 kb on - strandat 3577.411 kb on - strandat 3577.489 kb on + strand, within MPMX20_03396at 3577.543 kb on + strand, within MPMX20_03396at 3577.543 kb on + strand, within MPMX20_03396at 3577.543 kb on + strand, within MPMX20_03396at 3577.545 kb on + strand, within MPMX20_03396at 3577.545 kb on + strand, within MPMX20_03396at 3577.545 kb on + strand, within MPMX20_03396at 3577.551 kb on - strand, within MPMX20_03396at 3577.553 kb on - strand, within MPMX20_03396at 3577.553 kb on - strand, within MPMX20_03396at 3577.603 kb on - strand, within MPMX20_03396at 3577.647 kb on - strand, within MPMX20_03396at 3577.647 kb on - strand, within MPMX20_03396at 3577.653 kb on + strand, within MPMX20_03396at 3577.727 kb on + strand, within MPMX20_03396at 3577.858 kb on + strandat 3577.866 kb on - strandat 3577.895 kb on - strandat 3577.980 kb on + strandat 3577.980 kb on + strandat 3577.988 kb on - strandat 3578.032 kb on + strandat 3578.094 kb on + strandat 3578.153 kb on + strandat 3578.248 kb on + strand, within MPMX20_03397at 3578.248 kb on + strand, within MPMX20_03397at 3578.261 kb on - strand, within MPMX20_03397at 3578.278 kb on - strand, within MPMX20_03397at 3578.299 kb on + strand, within MPMX20_03397at 3578.365 kb on - strand, within MPMX20_03397at 3578.385 kb on - strand, within MPMX20_03397at 3578.638 kb on + strand, within MPMX20_03397at 3578.684 kb on + strand, within MPMX20_03397at 3578.690 kb on - strand, within MPMX20_03397at 3578.749 kb on + strand, within MPMX20_03397at 3578.755 kb on + strand, within MPMX20_03397at 3578.811 kb on + strand, within MPMX20_03397at 3578.816 kb on + strand, within MPMX20_03397

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Agromyces sp. SAI_196
remove
3,576,418 + MPMX20_03395 0.29 +0.9
3,576,418 + MPMX20_03395 0.29 +0.4
3,576,426 - MPMX20_03395 0.29 -1.7
3,576,585 - MPMX20_03395 0.43 -2.2
3,576,609 + MPMX20_03395 0.45 -2.9
3,576,638 - MPMX20_03395 0.48 +0.7
3,576,638 - MPMX20_03395 0.48 +0.2
3,576,737 - MPMX20_03395 0.56 -2.9
3,576,776 + MPMX20_03395 0.59 +2.1
3,576,776 + MPMX20_03395 0.59 +1.6
3,576,776 + MPMX20_03395 0.59 +2.6
3,576,776 + MPMX20_03395 0.59 -3.0
3,576,776 + MPMX20_03395 0.59 -1.6
3,576,776 + MPMX20_03395 0.59 -1.0
3,576,776 + MPMX20_03395 0.59 -0.0
3,576,784 - MPMX20_03395 0.60 -2.6
3,576,784 - MPMX20_03395 0.60 -3.8
3,576,784 - MPMX20_03395 0.60 -0.4
3,576,795 + MPMX20_03395 0.61 -0.4
3,576,817 + MPMX20_03395 0.63 +2.1
3,576,870 + MPMX20_03395 0.68 +1.6
3,576,878 + MPMX20_03395 0.68 +0.0
3,576,881 - MPMX20_03395 0.68 -2.5
3,577,019 + MPMX20_03395 0.80 -1.0
3,577,033 + MPMX20_03395 0.81 -0.0
3,577,062 + MPMX20_03395 0.84 +1.0
3,577,102 + MPMX20_03395 0.87 +0.6
3,577,115 - MPMX20_03395 0.89 -2.8
3,577,165 + +0.9
3,577,165 + -1.6
3,577,169 + -3.8
3,577,221 + -0.0
3,577,229 - -1.6
3,577,276 - +0.6
3,577,282 - -0.9
3,577,282 - -3.1
3,577,282 - -0.0
3,577,282 - -0.3
3,577,323 - -3.1
3,577,341 - -1.9
3,577,343 + -1.3
3,577,370 - +2.2
3,577,372 - -1.4
3,577,411 - -0.4
3,577,489 + MPMX20_03396 0.16 -3.2
3,577,543 + MPMX20_03396 0.29 -0.2
3,577,543 + MPMX20_03396 0.29 -0.9
3,577,543 + MPMX20_03396 0.29 -2.7
3,577,545 + MPMX20_03396 0.29 -1.6
3,577,545 + MPMX20_03396 0.29 -0.6
3,577,545 + MPMX20_03396 0.29 -2.2
3,577,551 - MPMX20_03396 0.31 -0.6
3,577,553 - MPMX20_03396 0.31 -2.7
3,577,553 - MPMX20_03396 0.31 -0.4
3,577,603 - MPMX20_03396 0.43 -1.8
3,577,647 - MPMX20_03396 0.53 -1.7
3,577,647 - MPMX20_03396 0.53 -1.4
3,577,653 + MPMX20_03396 0.54 -2.0
3,577,727 + MPMX20_03396 0.72 -2.8
3,577,858 + -2.3
3,577,866 - +1.1
3,577,895 - -2.3
3,577,980 + -0.4
3,577,980 + +1.2
3,577,988 - -0.4
3,578,032 + -3.4
3,578,094 + +0.4
3,578,153 + +1.6
3,578,248 + MPMX20_03397 0.10 +2.7
3,578,248 + MPMX20_03397 0.10 +0.3
3,578,261 - MPMX20_03397 0.11 -0.2
3,578,278 - MPMX20_03397 0.12 +0.3
3,578,299 + MPMX20_03397 0.13 +0.3
3,578,365 - MPMX20_03397 0.15 -2.3
3,578,385 - MPMX20_03397 0.16 +0.5
3,578,638 + MPMX20_03397 0.27 +0.9
3,578,684 + MPMX20_03397 0.29 -1.2
3,578,690 - MPMX20_03397 0.29 -1.2
3,578,749 + MPMX20_03397 0.32 -1.0
3,578,755 + MPMX20_03397 0.32 -1.1
3,578,811 + MPMX20_03397 0.35 +2.1
3,578,816 + MPMX20_03397 0.35 -0.9

Or see this region's nucleotide sequence