Experiment: 0.1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04616 and MPMX20_04617 are separated by 27 nucleotides MPMX20_04617 and MPMX20_04618 are separated by 4 nucleotides
MPMX20_04616: MPMX20_04616 - Ribose import binding protein RbsB, at 4,834,086 to 4,834,976
_04616
MPMX20_04617: MPMX20_04617 - Ribose import permease protein RbsC, at 4,835,004 to 4,835,969
_04617
MPMX20_04618: MPMX20_04618 - Ribose import ATP-binding protein RbsA, at 4,835,974 to 4,837,479
_04618
Position (kb)
4835
4836 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8
9 at 4834.011 kb on - strand at 4834.054 kb on - strand at 4834.062 kb on + strand at 4834.062 kb on + strand at 4834.062 kb on + strand at 4834.070 kb on - strand at 4834.143 kb on + strand at 4834.196 kb on + strand, within MPMX20_04616 at 4834.369 kb on + strand, within MPMX20_04616 at 4834.504 kb on + strand, within MPMX20_04616 at 4834.565 kb on - strand, within MPMX20_04616 at 4834.641 kb on + strand, within MPMX20_04616 at 4834.749 kb on - strand, within MPMX20_04616 at 4834.754 kb on - strand, within MPMX20_04616 at 4834.754 kb on - strand, within MPMX20_04616 at 4834.761 kb on - strand, within MPMX20_04616 at 4834.861 kb on + strand, within MPMX20_04616 at 4834.876 kb on + strand, within MPMX20_04616 at 4834.925 kb on - strand at 4834.930 kb on - strand at 4834.942 kb on + strand at 4834.994 kb on - strand at 4834.994 kb on - strand at 4834.994 kb on - strand at 4835.009 kb on + strand at 4835.045 kb on + strand at 4835.050 kb on + strand at 4835.066 kb on + strand at 4835.186 kb on - strand, within MPMX20_04617 at 4835.186 kb on - strand, within MPMX20_04617 at 4835.199 kb on - strand, within MPMX20_04617 at 4835.234 kb on + strand, within MPMX20_04617 at 4835.237 kb on + strand, within MPMX20_04617 at 4835.239 kb on + strand, within MPMX20_04617 at 4835.239 kb on + strand, within MPMX20_04617 at 4835.239 kb on + strand, within MPMX20_04617 at 4835.242 kb on - strand, within MPMX20_04617 at 4835.242 kb on - strand, within MPMX20_04617 at 4835.247 kb on - strand, within MPMX20_04617 at 4835.247 kb on - strand, within MPMX20_04617 at 4835.247 kb on - strand, within MPMX20_04617 at 4835.287 kb on + strand, within MPMX20_04617 at 4835.287 kb on - strand, within MPMX20_04617 at 4835.406 kb on + strand, within MPMX20_04617 at 4835.469 kb on + strand, within MPMX20_04617 at 4835.492 kb on + strand, within MPMX20_04617 at 4835.536 kb on + strand, within MPMX20_04617 at 4835.536 kb on + strand, within MPMX20_04617 at 4835.569 kb on + strand, within MPMX20_04617 at 4835.577 kb on - strand, within MPMX20_04617 at 4835.615 kb on + strand, within MPMX20_04617 at 4835.625 kb on + strand, within MPMX20_04617 at 4835.633 kb on - strand, within MPMX20_04617 at 4835.714 kb on - strand, within MPMX20_04617 at 4835.740 kb on + strand, within MPMX20_04617 at 4835.760 kb on - strand, within MPMX20_04617 at 4835.800 kb on + strand, within MPMX20_04617 at 4835.832 kb on - strand, within MPMX20_04617 at 4835.842 kb on - strand, within MPMX20_04617 at 4835.843 kb on - strand, within MPMX20_04617 at 4835.996 kb on + strand at 4835.998 kb on - strand at 4836.051 kb on + strand at 4836.088 kb on - strand at 4836.139 kb on + strand, within MPMX20_04618 at 4836.152 kb on + strand, within MPMX20_04618 at 4836.152 kb on + strand, within MPMX20_04618 at 4836.152 kb on + strand, within MPMX20_04618 at 4836.160 kb on - strand, within MPMX20_04618 at 4836.160 kb on - strand, within MPMX20_04618 at 4836.160 kb on - strand, within MPMX20_04618 at 4836.160 kb on - strand, within MPMX20_04618 at 4836.160 kb on - strand, within MPMX20_04618 at 4836.160 kb on - strand, within MPMX20_04618 at 4836.160 kb on - strand, within MPMX20_04618 at 4836.169 kb on - strand, within MPMX20_04618 at 4836.206 kb on - strand, within MPMX20_04618 at 4836.227 kb on - strand, within MPMX20_04618 at 4836.227 kb on - strand, within MPMX20_04618 at 4836.305 kb on - strand, within MPMX20_04618 at 4836.448 kb on + strand, within MPMX20_04618 at 4836.448 kb on + strand, within MPMX20_04618 at 4836.453 kb on + strand, within MPMX20_04618 at 4836.461 kb on - strand, within MPMX20_04618 at 4836.511 kb on + strand, within MPMX20_04618 at 4836.516 kb on + strand, within MPMX20_04618 at 4836.519 kb on - strand, within MPMX20_04618 at 4836.519 kb on - strand, within MPMX20_04618 at 4836.521 kb on - strand, within MPMX20_04618 at 4836.524 kb on - strand, within MPMX20_04618 at 4836.534 kb on + strand, within MPMX20_04618 at 4836.534 kb on + strand, within MPMX20_04618 at 4836.542 kb on - strand, within MPMX20_04618 at 4836.542 kb on - strand, within MPMX20_04618 at 4836.542 kb on - strand, within MPMX20_04618 at 4836.581 kb on - strand, within MPMX20_04618 at 4836.583 kb on + strand, within MPMX20_04618 at 4836.608 kb on - strand, within MPMX20_04618 at 4836.627 kb on - strand, within MPMX20_04618 at 4836.657 kb on + strand, within MPMX20_04618 at 4836.657 kb on + strand, within MPMX20_04618 at 4836.657 kb on + strand, within MPMX20_04618 at 4836.657 kb on + strand, within MPMX20_04618 at 4836.657 kb on + strand, within MPMX20_04618 at 4836.657 kb on + strand, within MPMX20_04618 at 4836.657 kb on + strand, within MPMX20_04618 at 4836.657 kb on + strand, within MPMX20_04618 at 4836.657 kb on + strand, within MPMX20_04618 at 4836.657 kb on + strand, within MPMX20_04618 at 4836.657 kb on + strand, within MPMX20_04618 at 4836.665 kb on - strand, within MPMX20_04618 at 4836.665 kb on - strand, within MPMX20_04618 at 4836.665 kb on - strand, within MPMX20_04618 at 4836.665 kb on - strand, within MPMX20_04618 at 4836.665 kb on - strand, within MPMX20_04618 at 4836.665 kb on - strand, within MPMX20_04618 at 4836.681 kb on - strand, within MPMX20_04618 at 4836.686 kb on + strand, within MPMX20_04618 at 4836.686 kb on + strand, within MPMX20_04618 at 4836.686 kb on + strand, within MPMX20_04618 at 4836.702 kb on + strand, within MPMX20_04618 at 4836.710 kb on - strand, within MPMX20_04618 at 4836.710 kb on - strand, within MPMX20_04618 at 4836.823 kb on + strand, within MPMX20_04618 at 4836.889 kb on + strand, within MPMX20_04618 at 4836.889 kb on + strand, within MPMX20_04618 at 4836.897 kb on - strand, within MPMX20_04618 at 4836.956 kb on + strand, within MPMX20_04618
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021 remove 4,834,011 - +3.9 4,834,054 - +0.7 4,834,062 + +3.0 4,834,062 + +3.0 4,834,062 + +9.4 4,834,070 - +1.7 4,834,143 + +1.8 4,834,196 + MPMX20_04616 0.12 +2.8 4,834,369 + MPMX20_04616 0.32 +0.3 4,834,504 + MPMX20_04616 0.47 +0.3 4,834,565 - MPMX20_04616 0.54 +0.3 4,834,641 + MPMX20_04616 0.62 +1.5 4,834,749 - MPMX20_04616 0.74 -0.6 4,834,754 - MPMX20_04616 0.75 -0.4 4,834,754 - MPMX20_04616 0.75 -0.5 4,834,761 - MPMX20_04616 0.76 +0.8 4,834,861 + MPMX20_04616 0.87 -0.4 4,834,876 + MPMX20_04616 0.89 +1.1 4,834,925 - +1.1 4,834,930 - -0.6 4,834,942 + +0.3 4,834,994 - +1.3 4,834,994 - -0.1 4,834,994 - -0.2 4,835,009 + +0.4 4,835,045 + -0.2 4,835,050 + -0.3 4,835,066 + +0.5 4,835,186 - MPMX20_04617 0.19 +3.9 4,835,186 - MPMX20_04617 0.19 -0.9 4,835,199 - MPMX20_04617 0.20 -0.5 4,835,234 + MPMX20_04617 0.24 -1.0 4,835,237 + MPMX20_04617 0.24 -0.0 4,835,239 + MPMX20_04617 0.24 -0.3 4,835,239 + MPMX20_04617 0.24 -0.7 4,835,239 + MPMX20_04617 0.24 -1.3 4,835,242 - MPMX20_04617 0.25 +0.1 4,835,242 - MPMX20_04617 0.25 -0.4 4,835,247 - MPMX20_04617 0.25 +0.7 4,835,247 - MPMX20_04617 0.25 -2.7 4,835,247 - MPMX20_04617 0.25 -1.9 4,835,287 + MPMX20_04617 0.29 -1.1 4,835,287 - MPMX20_04617 0.29 -0.2 4,835,406 + MPMX20_04617 0.42 +1.3 4,835,469 + MPMX20_04617 0.48 +2.3 4,835,492 + MPMX20_04617 0.51 -0.7 4,835,536 + MPMX20_04617 0.55 -0.4 4,835,536 + MPMX20_04617 0.55 +0.6 4,835,569 + MPMX20_04617 0.58 -1.1 4,835,577 - MPMX20_04617 0.59 +1.3 4,835,615 + MPMX20_04617 0.63 -0.9 4,835,625 + MPMX20_04617 0.64 +0.1 4,835,633 - MPMX20_04617 0.65 -0.1 4,835,714 - MPMX20_04617 0.73 +0.0 4,835,740 + MPMX20_04617 0.76 -0.3 4,835,760 - MPMX20_04617 0.78 +0.3 4,835,800 + MPMX20_04617 0.82 +4.3 4,835,832 - MPMX20_04617 0.86 +1.1 4,835,842 - MPMX20_04617 0.87 -0.5 4,835,843 - MPMX20_04617 0.87 -0.0 4,835,996 + -1.3 4,835,998 - -1.0 4,836,051 + -0.3 4,836,088 - +0.3 4,836,139 + MPMX20_04618 0.11 -0.0 4,836,152 + MPMX20_04618 0.12 -1.5 4,836,152 + MPMX20_04618 0.12 -0.4 4,836,152 + MPMX20_04618 0.12 -0.5 4,836,160 - MPMX20_04618 0.12 +1.2 4,836,160 - MPMX20_04618 0.12 -0.2 4,836,160 - MPMX20_04618 0.12 -0.9 4,836,160 - MPMX20_04618 0.12 +1.0 4,836,160 - MPMX20_04618 0.12 -0.8 4,836,160 - MPMX20_04618 0.12 -0.3 4,836,160 - MPMX20_04618 0.12 -0.7 4,836,169 - MPMX20_04618 0.13 -0.0 4,836,206 - MPMX20_04618 0.15 -0.1 4,836,227 - MPMX20_04618 0.17 +1.3 4,836,227 - MPMX20_04618 0.17 -0.2 4,836,305 - MPMX20_04618 0.22 +0.5 4,836,448 + MPMX20_04618 0.31 -0.6 4,836,448 + MPMX20_04618 0.31 -0.5 4,836,453 + MPMX20_04618 0.32 +0.8 4,836,461 - MPMX20_04618 0.32 -0.7 4,836,511 + MPMX20_04618 0.36 +0.4 4,836,516 + MPMX20_04618 0.36 +0.5 4,836,519 - MPMX20_04618 0.36 -0.5 4,836,519 - MPMX20_04618 0.36 -0.5 4,836,521 - MPMX20_04618 0.36 -0.5 4,836,524 - MPMX20_04618 0.37 +0.3 4,836,534 + MPMX20_04618 0.37 +1.4 4,836,534 + MPMX20_04618 0.37 -0.4 4,836,542 - MPMX20_04618 0.38 +0.5 4,836,542 - MPMX20_04618 0.38 -0.3 4,836,542 - MPMX20_04618 0.38 +1.0 4,836,581 - MPMX20_04618 0.40 +0.2 4,836,583 + MPMX20_04618 0.40 +0.3 4,836,608 - MPMX20_04618 0.42 +0.3 4,836,627 - MPMX20_04618 0.43 -0.1 4,836,657 + MPMX20_04618 0.45 -0.1 4,836,657 + MPMX20_04618 0.45 -0.1 4,836,657 + MPMX20_04618 0.45 -0.2 4,836,657 + MPMX20_04618 0.45 -1.2 4,836,657 + MPMX20_04618 0.45 -0.3 4,836,657 + MPMX20_04618 0.45 +0.5 4,836,657 + MPMX20_04618 0.45 +0.0 4,836,657 + MPMX20_04618 0.45 -0.5 4,836,657 + MPMX20_04618 0.45 +1.3 4,836,657 + MPMX20_04618 0.45 +0.5 4,836,657 + MPMX20_04618 0.45 -0.7 4,836,665 - MPMX20_04618 0.46 +0.3 4,836,665 - MPMX20_04618 0.46 +1.3 4,836,665 - MPMX20_04618 0.46 -2.1 4,836,665 - MPMX20_04618 0.46 +1.5 4,836,665 - MPMX20_04618 0.46 +0.3 4,836,665 - MPMX20_04618 0.46 -1.1 4,836,681 - MPMX20_04618 0.47 -0.4 4,836,686 + MPMX20_04618 0.47 +0.4 4,836,686 + MPMX20_04618 0.47 +1.3 4,836,686 + MPMX20_04618 0.47 +0.5 4,836,702 + MPMX20_04618 0.48 +1.3 4,836,710 - MPMX20_04618 0.49 +0.3 4,836,710 - MPMX20_04618 0.49 +1.3 4,836,823 + MPMX20_04618 0.56 +0.5 4,836,889 + MPMX20_04618 0.61 +0.0 4,836,889 + MPMX20_04618 0.61 -1.9 4,836,897 - MPMX20_04618 0.61 -0.0 4,836,956 + MPMX20_04618 0.65 -0.8
Or see this region's nucleotide sequence