Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04617

Experiment: 0.1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04616 and MPMX20_04617 are separated by 27 nucleotidesMPMX20_04617 and MPMX20_04618 are separated by 4 nucleotides MPMX20_04616: MPMX20_04616 - Ribose import binding protein RbsB, at 4,834,086 to 4,834,976 _04616 MPMX20_04617: MPMX20_04617 - Ribose import permease protein RbsC, at 4,835,004 to 4,835,969 _04617 MPMX20_04618: MPMX20_04618 - Ribose import ATP-binding protein RbsA, at 4,835,974 to 4,837,479 _04618 Position (kb) 4835 4836Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 4834.011 kb on - strandat 4834.054 kb on - strandat 4834.062 kb on + strandat 4834.062 kb on + strandat 4834.062 kb on + strandat 4834.070 kb on - strandat 4834.143 kb on + strandat 4834.196 kb on + strand, within MPMX20_04616at 4834.369 kb on + strand, within MPMX20_04616at 4834.504 kb on + strand, within MPMX20_04616at 4834.565 kb on - strand, within MPMX20_04616at 4834.641 kb on + strand, within MPMX20_04616at 4834.749 kb on - strand, within MPMX20_04616at 4834.754 kb on - strand, within MPMX20_04616at 4834.754 kb on - strand, within MPMX20_04616at 4834.761 kb on - strand, within MPMX20_04616at 4834.861 kb on + strand, within MPMX20_04616at 4834.876 kb on + strand, within MPMX20_04616at 4834.925 kb on - strandat 4834.930 kb on - strandat 4834.942 kb on + strandat 4834.994 kb on - strandat 4834.994 kb on - strandat 4834.994 kb on - strandat 4835.009 kb on + strandat 4835.045 kb on + strandat 4835.050 kb on + strandat 4835.066 kb on + strandat 4835.186 kb on - strand, within MPMX20_04617at 4835.186 kb on - strand, within MPMX20_04617at 4835.199 kb on - strand, within MPMX20_04617at 4835.234 kb on + strand, within MPMX20_04617at 4835.237 kb on + strand, within MPMX20_04617at 4835.239 kb on + strand, within MPMX20_04617at 4835.239 kb on + strand, within MPMX20_04617at 4835.239 kb on + strand, within MPMX20_04617at 4835.242 kb on - strand, within MPMX20_04617at 4835.242 kb on - strand, within MPMX20_04617at 4835.247 kb on - strand, within MPMX20_04617at 4835.247 kb on - strand, within MPMX20_04617at 4835.247 kb on - strand, within MPMX20_04617at 4835.287 kb on + strand, within MPMX20_04617at 4835.287 kb on - strand, within MPMX20_04617at 4835.406 kb on + strand, within MPMX20_04617at 4835.469 kb on + strand, within MPMX20_04617at 4835.492 kb on + strand, within MPMX20_04617at 4835.536 kb on + strand, within MPMX20_04617at 4835.536 kb on + strand, within MPMX20_04617at 4835.569 kb on + strand, within MPMX20_04617at 4835.577 kb on - strand, within MPMX20_04617at 4835.615 kb on + strand, within MPMX20_04617at 4835.625 kb on + strand, within MPMX20_04617at 4835.633 kb on - strand, within MPMX20_04617at 4835.714 kb on - strand, within MPMX20_04617at 4835.740 kb on + strand, within MPMX20_04617at 4835.760 kb on - strand, within MPMX20_04617at 4835.800 kb on + strand, within MPMX20_04617at 4835.832 kb on - strand, within MPMX20_04617at 4835.842 kb on - strand, within MPMX20_04617at 4835.843 kb on - strand, within MPMX20_04617at 4835.996 kb on + strandat 4835.998 kb on - strandat 4836.051 kb on + strandat 4836.088 kb on - strandat 4836.139 kb on + strand, within MPMX20_04618at 4836.152 kb on + strand, within MPMX20_04618at 4836.152 kb on + strand, within MPMX20_04618at 4836.152 kb on + strand, within MPMX20_04618at 4836.160 kb on - strand, within MPMX20_04618at 4836.160 kb on - strand, within MPMX20_04618at 4836.160 kb on - strand, within MPMX20_04618at 4836.160 kb on - strand, within MPMX20_04618at 4836.160 kb on - strand, within MPMX20_04618at 4836.160 kb on - strand, within MPMX20_04618at 4836.160 kb on - strand, within MPMX20_04618at 4836.169 kb on - strand, within MPMX20_04618at 4836.206 kb on - strand, within MPMX20_04618at 4836.227 kb on - strand, within MPMX20_04618at 4836.227 kb on - strand, within MPMX20_04618at 4836.305 kb on - strand, within MPMX20_04618at 4836.448 kb on + strand, within MPMX20_04618at 4836.448 kb on + strand, within MPMX20_04618at 4836.453 kb on + strand, within MPMX20_04618at 4836.461 kb on - strand, within MPMX20_04618at 4836.511 kb on + strand, within MPMX20_04618at 4836.516 kb on + strand, within MPMX20_04618at 4836.519 kb on - strand, within MPMX20_04618at 4836.519 kb on - strand, within MPMX20_04618at 4836.521 kb on - strand, within MPMX20_04618at 4836.524 kb on - strand, within MPMX20_04618at 4836.534 kb on + strand, within MPMX20_04618at 4836.534 kb on + strand, within MPMX20_04618at 4836.542 kb on - strand, within MPMX20_04618at 4836.542 kb on - strand, within MPMX20_04618at 4836.542 kb on - strand, within MPMX20_04618at 4836.581 kb on - strand, within MPMX20_04618at 4836.583 kb on + strand, within MPMX20_04618at 4836.608 kb on - strand, within MPMX20_04618at 4836.627 kb on - strand, within MPMX20_04618at 4836.657 kb on + strand, within MPMX20_04618at 4836.657 kb on + strand, within MPMX20_04618at 4836.657 kb on + strand, within MPMX20_04618at 4836.657 kb on + strand, within MPMX20_04618at 4836.657 kb on + strand, within MPMX20_04618at 4836.657 kb on + strand, within MPMX20_04618at 4836.657 kb on + strand, within MPMX20_04618at 4836.657 kb on + strand, within MPMX20_04618at 4836.657 kb on + strand, within MPMX20_04618at 4836.657 kb on + strand, within MPMX20_04618at 4836.657 kb on + strand, within MPMX20_04618at 4836.665 kb on - strand, within MPMX20_04618at 4836.665 kb on - strand, within MPMX20_04618at 4836.665 kb on - strand, within MPMX20_04618at 4836.665 kb on - strand, within MPMX20_04618at 4836.665 kb on - strand, within MPMX20_04618at 4836.665 kb on - strand, within MPMX20_04618at 4836.681 kb on - strand, within MPMX20_04618at 4836.686 kb on + strand, within MPMX20_04618at 4836.686 kb on + strand, within MPMX20_04618at 4836.686 kb on + strand, within MPMX20_04618at 4836.702 kb on + strand, within MPMX20_04618at 4836.710 kb on - strand, within MPMX20_04618at 4836.710 kb on - strand, within MPMX20_04618at 4836.823 kb on + strand, within MPMX20_04618at 4836.889 kb on + strand, within MPMX20_04618at 4836.889 kb on + strand, within MPMX20_04618at 4836.897 kb on - strand, within MPMX20_04618at 4836.956 kb on + strand, within MPMX20_04618

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021
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4,834,011 - +3.9
4,834,054 - +0.7
4,834,062 + +3.0
4,834,062 + +3.0
4,834,062 + +9.4
4,834,070 - +1.7
4,834,143 + +1.8
4,834,196 + MPMX20_04616 0.12 +2.8
4,834,369 + MPMX20_04616 0.32 +0.3
4,834,504 + MPMX20_04616 0.47 +0.3
4,834,565 - MPMX20_04616 0.54 +0.3
4,834,641 + MPMX20_04616 0.62 +1.5
4,834,749 - MPMX20_04616 0.74 -0.6
4,834,754 - MPMX20_04616 0.75 -0.4
4,834,754 - MPMX20_04616 0.75 -0.5
4,834,761 - MPMX20_04616 0.76 +0.8
4,834,861 + MPMX20_04616 0.87 -0.4
4,834,876 + MPMX20_04616 0.89 +1.1
4,834,925 - +1.1
4,834,930 - -0.6
4,834,942 + +0.3
4,834,994 - +1.3
4,834,994 - -0.1
4,834,994 - -0.2
4,835,009 + +0.4
4,835,045 + -0.2
4,835,050 + -0.3
4,835,066 + +0.5
4,835,186 - MPMX20_04617 0.19 +3.9
4,835,186 - MPMX20_04617 0.19 -0.9
4,835,199 - MPMX20_04617 0.20 -0.5
4,835,234 + MPMX20_04617 0.24 -1.0
4,835,237 + MPMX20_04617 0.24 -0.0
4,835,239 + MPMX20_04617 0.24 -0.3
4,835,239 + MPMX20_04617 0.24 -0.7
4,835,239 + MPMX20_04617 0.24 -1.3
4,835,242 - MPMX20_04617 0.25 +0.1
4,835,242 - MPMX20_04617 0.25 -0.4
4,835,247 - MPMX20_04617 0.25 +0.7
4,835,247 - MPMX20_04617 0.25 -2.7
4,835,247 - MPMX20_04617 0.25 -1.9
4,835,287 + MPMX20_04617 0.29 -1.1
4,835,287 - MPMX20_04617 0.29 -0.2
4,835,406 + MPMX20_04617 0.42 +1.3
4,835,469 + MPMX20_04617 0.48 +2.3
4,835,492 + MPMX20_04617 0.51 -0.7
4,835,536 + MPMX20_04617 0.55 -0.4
4,835,536 + MPMX20_04617 0.55 +0.6
4,835,569 + MPMX20_04617 0.58 -1.1
4,835,577 - MPMX20_04617 0.59 +1.3
4,835,615 + MPMX20_04617 0.63 -0.9
4,835,625 + MPMX20_04617 0.64 +0.1
4,835,633 - MPMX20_04617 0.65 -0.1
4,835,714 - MPMX20_04617 0.73 +0.0
4,835,740 + MPMX20_04617 0.76 -0.3
4,835,760 - MPMX20_04617 0.78 +0.3
4,835,800 + MPMX20_04617 0.82 +4.3
4,835,832 - MPMX20_04617 0.86 +1.1
4,835,842 - MPMX20_04617 0.87 -0.5
4,835,843 - MPMX20_04617 0.87 -0.0
4,835,996 + -1.3
4,835,998 - -1.0
4,836,051 + -0.3
4,836,088 - +0.3
4,836,139 + MPMX20_04618 0.11 -0.0
4,836,152 + MPMX20_04618 0.12 -1.5
4,836,152 + MPMX20_04618 0.12 -0.4
4,836,152 + MPMX20_04618 0.12 -0.5
4,836,160 - MPMX20_04618 0.12 +1.2
4,836,160 - MPMX20_04618 0.12 -0.2
4,836,160 - MPMX20_04618 0.12 -0.9
4,836,160 - MPMX20_04618 0.12 +1.0
4,836,160 - MPMX20_04618 0.12 -0.8
4,836,160 - MPMX20_04618 0.12 -0.3
4,836,160 - MPMX20_04618 0.12 -0.7
4,836,169 - MPMX20_04618 0.13 -0.0
4,836,206 - MPMX20_04618 0.15 -0.1
4,836,227 - MPMX20_04618 0.17 +1.3
4,836,227 - MPMX20_04618 0.17 -0.2
4,836,305 - MPMX20_04618 0.22 +0.5
4,836,448 + MPMX20_04618 0.31 -0.6
4,836,448 + MPMX20_04618 0.31 -0.5
4,836,453 + MPMX20_04618 0.32 +0.8
4,836,461 - MPMX20_04618 0.32 -0.7
4,836,511 + MPMX20_04618 0.36 +0.4
4,836,516 + MPMX20_04618 0.36 +0.5
4,836,519 - MPMX20_04618 0.36 -0.5
4,836,519 - MPMX20_04618 0.36 -0.5
4,836,521 - MPMX20_04618 0.36 -0.5
4,836,524 - MPMX20_04618 0.37 +0.3
4,836,534 + MPMX20_04618 0.37 +1.4
4,836,534 + MPMX20_04618 0.37 -0.4
4,836,542 - MPMX20_04618 0.38 +0.5
4,836,542 - MPMX20_04618 0.38 -0.3
4,836,542 - MPMX20_04618 0.38 +1.0
4,836,581 - MPMX20_04618 0.40 +0.2
4,836,583 + MPMX20_04618 0.40 +0.3
4,836,608 - MPMX20_04618 0.42 +0.3
4,836,627 - MPMX20_04618 0.43 -0.1
4,836,657 + MPMX20_04618 0.45 -0.1
4,836,657 + MPMX20_04618 0.45 -0.1
4,836,657 + MPMX20_04618 0.45 -0.2
4,836,657 + MPMX20_04618 0.45 -1.2
4,836,657 + MPMX20_04618 0.45 -0.3
4,836,657 + MPMX20_04618 0.45 +0.5
4,836,657 + MPMX20_04618 0.45 +0.0
4,836,657 + MPMX20_04618 0.45 -0.5
4,836,657 + MPMX20_04618 0.45 +1.3
4,836,657 + MPMX20_04618 0.45 +0.5
4,836,657 + MPMX20_04618 0.45 -0.7
4,836,665 - MPMX20_04618 0.46 +0.3
4,836,665 - MPMX20_04618 0.46 +1.3
4,836,665 - MPMX20_04618 0.46 -2.1
4,836,665 - MPMX20_04618 0.46 +1.5
4,836,665 - MPMX20_04618 0.46 +0.3
4,836,665 - MPMX20_04618 0.46 -1.1
4,836,681 - MPMX20_04618 0.47 -0.4
4,836,686 + MPMX20_04618 0.47 +0.4
4,836,686 + MPMX20_04618 0.47 +1.3
4,836,686 + MPMX20_04618 0.47 +0.5
4,836,702 + MPMX20_04618 0.48 +1.3
4,836,710 - MPMX20_04618 0.49 +0.3
4,836,710 - MPMX20_04618 0.49 +1.3
4,836,823 + MPMX20_04618 0.56 +0.5
4,836,889 + MPMX20_04618 0.61 +0.0
4,836,889 + MPMX20_04618 0.61 -1.9
4,836,897 - MPMX20_04618 0.61 -0.0
4,836,956 + MPMX20_04618 0.65 -0.8

Or see this region's nucleotide sequence