Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01426

Experiment: 0.1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01425 and MPMX20_01426 are separated by 96 nucleotidesMPMX20_01426 and MPMX20_01427 overlap by 14 nucleotidesMPMX20_01427 and MPMX20_01428 are separated by 5 nucleotides MPMX20_01425: MPMX20_01425 - ATP-dependent RNA helicase RhlE, at 1,487,938 to 1,489,323 _01425 MPMX20_01426: MPMX20_01426 - ATP-dependent DNA helicase DinG, at 1,489,420 to 1,491,597 _01426 MPMX20_01427: MPMX20_01427 - Protein FimG, at 1,491,584 to 1,492,087 _01427 MPMX20_01428: MPMX20_01428 - hypothetical protein, at 1,492,093 to 1,493,082 _01428 Position (kb) 1489 1490 1491 1492Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1488.431 kb on + strand, within MPMX20_01425at 1488.492 kb on + strand, within MPMX20_01425at 1488.584 kb on + strand, within MPMX20_01425at 1488.632 kb on + strand, within MPMX20_01425at 1488.661 kb on - strand, within MPMX20_01425at 1488.695 kb on + strand, within MPMX20_01425at 1488.799 kb on - strand, within MPMX20_01425at 1488.838 kb on - strand, within MPMX20_01425at 1488.893 kb on + strand, within MPMX20_01425at 1488.981 kb on + strand, within MPMX20_01425at 1489.003 kb on + strand, within MPMX20_01425at 1489.134 kb on + strand, within MPMX20_01425at 1489.159 kb on - strand, within MPMX20_01425at 1489.221 kb on + strandat 1489.229 kb on - strandat 1489.229 kb on - strandat 1489.229 kb on - strandat 1489.274 kb on + strandat 1489.274 kb on + strandat 1489.422 kb on + strandat 1489.430 kb on - strandat 1489.452 kb on - strandat 1489.474 kb on + strandat 1489.675 kb on - strand, within MPMX20_01426at 1489.675 kb on - strand, within MPMX20_01426at 1489.738 kb on - strand, within MPMX20_01426at 1489.774 kb on - strand, within MPMX20_01426at 1489.881 kb on - strand, within MPMX20_01426at 1489.882 kb on - strand, within MPMX20_01426at 1489.893 kb on + strand, within MPMX20_01426at 1489.901 kb on - strand, within MPMX20_01426at 1489.963 kb on + strand, within MPMX20_01426at 1489.985 kb on - strand, within MPMX20_01426at 1490.082 kb on + strand, within MPMX20_01426at 1490.097 kb on + strand, within MPMX20_01426at 1490.097 kb on + strand, within MPMX20_01426at 1490.097 kb on + strand, within MPMX20_01426at 1490.097 kb on + strand, within MPMX20_01426at 1490.097 kb on + strand, within MPMX20_01426at 1490.097 kb on + strand, within MPMX20_01426at 1490.097 kb on + strand, within MPMX20_01426at 1490.105 kb on - strand, within MPMX20_01426at 1490.105 kb on - strand, within MPMX20_01426at 1490.105 kb on - strand, within MPMX20_01426at 1490.105 kb on - strand, within MPMX20_01426at 1490.105 kb on - strand, within MPMX20_01426at 1490.115 kb on + strand, within MPMX20_01426at 1490.182 kb on + strand, within MPMX20_01426at 1490.276 kb on + strand, within MPMX20_01426at 1490.276 kb on + strand, within MPMX20_01426at 1490.284 kb on - strand, within MPMX20_01426at 1490.328 kb on + strand, within MPMX20_01426at 1490.347 kb on + strand, within MPMX20_01426at 1490.350 kb on + strand, within MPMX20_01426at 1490.381 kb on - strand, within MPMX20_01426at 1490.424 kb on - strand, within MPMX20_01426at 1490.483 kb on - strand, within MPMX20_01426at 1490.593 kb on + strand, within MPMX20_01426at 1490.785 kb on + strand, within MPMX20_01426at 1490.900 kb on + strand, within MPMX20_01426at 1490.908 kb on - strand, within MPMX20_01426at 1490.908 kb on - strand, within MPMX20_01426at 1490.936 kb on + strand, within MPMX20_01426at 1490.970 kb on - strand, within MPMX20_01426at 1491.001 kb on + strand, within MPMX20_01426at 1491.009 kb on - strand, within MPMX20_01426at 1491.115 kb on + strand, within MPMX20_01426at 1491.147 kb on + strand, within MPMX20_01426at 1491.191 kb on - strand, within MPMX20_01426at 1491.337 kb on + strand, within MPMX20_01426at 1491.407 kb on + strandat 1491.552 kb on + strandat 1491.625 kb on - strandat 1491.681 kb on + strand, within MPMX20_01427at 1491.709 kb on + strand, within MPMX20_01427at 1491.718 kb on - strand, within MPMX20_01427at 1491.773 kb on + strand, within MPMX20_01427at 1491.783 kb on - strand, within MPMX20_01427at 1491.883 kb on + strand, within MPMX20_01427at 1491.948 kb on + strand, within MPMX20_01427at 1491.984 kb on + strand, within MPMX20_01427at 1492.039 kb on + strandat 1492.105 kb on - strandat 1492.132 kb on - strandat 1492.134 kb on + strandat 1492.142 kb on - strandat 1492.142 kb on - strandat 1492.151 kb on + strandat 1492.151 kb on + strandat 1492.151 kb on + strandat 1492.151 kb on + strandat 1492.169 kb on - strandat 1492.356 kb on + strand, within MPMX20_01428at 1492.356 kb on + strand, within MPMX20_01428at 1492.356 kb on + strand, within MPMX20_01428at 1492.356 kb on + strand, within MPMX20_01428at 1492.363 kb on - strand, within MPMX20_01428at 1492.364 kb on - strand, within MPMX20_01428at 1492.364 kb on - strand, within MPMX20_01428at 1492.364 kb on - strand, within MPMX20_01428at 1492.375 kb on - strand, within MPMX20_01428at 1492.415 kb on + strand, within MPMX20_01428at 1492.415 kb on + strand, within MPMX20_01428at 1492.423 kb on - strand, within MPMX20_01428at 1492.428 kb on - strand, within MPMX20_01428at 1492.436 kb on - strand, within MPMX20_01428at 1492.491 kb on + strand, within MPMX20_01428at 1492.491 kb on + strand, within MPMX20_01428at 1492.491 kb on + strand, within MPMX20_01428at 1492.499 kb on - strand, within MPMX20_01428at 1492.499 kb on - strand, within MPMX20_01428at 1492.499 kb on - strand, within MPMX20_01428at 1492.559 kb on + strand, within MPMX20_01428at 1492.586 kb on + strand, within MPMX20_01428

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021
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1,488,431 + MPMX20_01425 0.36 +0.3
1,488,492 + MPMX20_01425 0.40 +0.2
1,488,584 + MPMX20_01425 0.47 +1.0
1,488,632 + MPMX20_01425 0.50 +0.9
1,488,661 - MPMX20_01425 0.52 +1.4
1,488,695 + MPMX20_01425 0.55 -0.3
1,488,799 - MPMX20_01425 0.62 +0.0
1,488,838 - MPMX20_01425 0.65 +0.0
1,488,893 + MPMX20_01425 0.69 +0.5
1,488,981 + MPMX20_01425 0.75 +0.0
1,489,003 + MPMX20_01425 0.77 -0.3
1,489,134 + MPMX20_01425 0.86 +0.2
1,489,159 - MPMX20_01425 0.88 -0.7
1,489,221 + +0.7
1,489,229 - -1.1
1,489,229 - -0.4
1,489,229 - -0.3
1,489,274 + +0.1
1,489,274 + -0.5
1,489,422 + +0.0
1,489,430 - -0.2
1,489,452 - -0.2
1,489,474 + +0.5
1,489,675 - MPMX20_01426 0.12 +1.2
1,489,675 - MPMX20_01426 0.12 +1.4
1,489,738 - MPMX20_01426 0.15 +0.7
1,489,774 - MPMX20_01426 0.16 +1.7
1,489,881 - MPMX20_01426 0.21 +0.2
1,489,882 - MPMX20_01426 0.21 +0.9
1,489,893 + MPMX20_01426 0.22 -0.9
1,489,901 - MPMX20_01426 0.22 -0.8
1,489,963 + MPMX20_01426 0.25 +1.7
1,489,985 - MPMX20_01426 0.26 +0.4
1,490,082 + MPMX20_01426 0.30 +2.0
1,490,097 + MPMX20_01426 0.31 -1.5
1,490,097 + MPMX20_01426 0.31 +0.1
1,490,097 + MPMX20_01426 0.31 +2.2
1,490,097 + MPMX20_01426 0.31 +0.5
1,490,097 + MPMX20_01426 0.31 +1.0
1,490,097 + MPMX20_01426 0.31 +4.8
1,490,097 + MPMX20_01426 0.31 +0.2
1,490,105 - MPMX20_01426 0.31 -1.1
1,490,105 - MPMX20_01426 0.31 +0.9
1,490,105 - MPMX20_01426 0.31 +0.7
1,490,105 - MPMX20_01426 0.31 -0.3
1,490,105 - MPMX20_01426 0.31 +0.2
1,490,115 + MPMX20_01426 0.32 -0.7
1,490,182 + MPMX20_01426 0.35 -0.2
1,490,276 + MPMX20_01426 0.39 +0.3
1,490,276 + MPMX20_01426 0.39 -0.2
1,490,284 - MPMX20_01426 0.40 +0.1
1,490,328 + MPMX20_01426 0.42 -1.0
1,490,347 + MPMX20_01426 0.43 -0.9
1,490,350 + MPMX20_01426 0.43 -0.9
1,490,381 - MPMX20_01426 0.44 +0.4
1,490,424 - MPMX20_01426 0.46 +1.2
1,490,483 - MPMX20_01426 0.49 +0.3
1,490,593 + MPMX20_01426 0.54 -0.3
1,490,785 + MPMX20_01426 0.63 -0.0
1,490,900 + MPMX20_01426 0.68 +0.2
1,490,908 - MPMX20_01426 0.68 +0.7
1,490,908 - MPMX20_01426 0.68 +0.3
1,490,936 + MPMX20_01426 0.70 -1.1
1,490,970 - MPMX20_01426 0.71 +0.4
1,491,001 + MPMX20_01426 0.73 -0.0
1,491,009 - MPMX20_01426 0.73 +0.2
1,491,115 + MPMX20_01426 0.78 -0.3
1,491,147 + MPMX20_01426 0.79 +1.2
1,491,191 - MPMX20_01426 0.81 -0.1
1,491,337 + MPMX20_01426 0.88 +0.1
1,491,407 + -0.2
1,491,552 + +0.0
1,491,625 - -0.2
1,491,681 + MPMX20_01427 0.19 -1.5
1,491,709 + MPMX20_01427 0.25 +0.1
1,491,718 - MPMX20_01427 0.27 -1.3
1,491,773 + MPMX20_01427 0.38 +0.5
1,491,783 - MPMX20_01427 0.39 -0.9
1,491,883 + MPMX20_01427 0.59 -1.2
1,491,948 + MPMX20_01427 0.72 -0.5
1,491,984 + MPMX20_01427 0.79 -1.1
1,492,039 + -0.3
1,492,105 - -0.3
1,492,132 - +0.5
1,492,134 + +0.9
1,492,142 - -0.9
1,492,142 - -1.2
1,492,151 + +4.1
1,492,151 + +0.4
1,492,151 + -0.2
1,492,151 + +0.1
1,492,169 - -0.6
1,492,356 + MPMX20_01428 0.27 -0.3
1,492,356 + MPMX20_01428 0.27 -0.9
1,492,356 + MPMX20_01428 0.27 +0.4
1,492,356 + MPMX20_01428 0.27 +2.2
1,492,363 - MPMX20_01428 0.27 -0.3
1,492,364 - MPMX20_01428 0.27 +1.2
1,492,364 - MPMX20_01428 0.27 +1.7
1,492,364 - MPMX20_01428 0.27 -0.3
1,492,375 - MPMX20_01428 0.28 -0.9
1,492,415 + MPMX20_01428 0.33 -0.6
1,492,415 + MPMX20_01428 0.33 +0.4
1,492,423 - MPMX20_01428 0.33 -1.1
1,492,428 - MPMX20_01428 0.34 +2.2
1,492,436 - MPMX20_01428 0.35 +0.2
1,492,491 + MPMX20_01428 0.40 -2.5
1,492,491 + MPMX20_01428 0.40 -0.0
1,492,491 + MPMX20_01428 0.40 +1.1
1,492,499 - MPMX20_01428 0.41 -0.3
1,492,499 - MPMX20_01428 0.41 -0.5
1,492,499 - MPMX20_01428 0.41 -0.6
1,492,559 + MPMX20_01428 0.47 +0.5
1,492,586 + MPMX20_01428 0.50 -2.2

Or see this region's nucleotide sequence