Experiment: 0.1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01274 and MPMX20_01275 are separated by 9 nucleotides MPMX20_01275 and MPMX20_01276 are separated by 137 nucleotides MPMX20_01276 and MPMX20_01277 are separated by 254 nucleotides
MPMX20_01274: MPMX20_01274 - putative zinc-binding alcohol dehydrogenase, at 1,338,484 to 1,339,722
_01274
MPMX20_01275: MPMX20_01275 - hypothetical protein, at 1,339,732 to 1,339,821
_01275
MPMX20_01276: MPMX20_01276 - Regulator of nucleoside diphosphate kinase, at 1,339,959 to 1,340,369
_01276
MPMX20_01277: MPMX20_01277 - Non-heme chloroperoxidase, at 1,340,624 to 1,341,454
_01277
Position (kb)
1339
1340
1341 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1338.984 kb on - strand, within MPMX20_01274 at 1338.989 kb on - strand, within MPMX20_01274 at 1339.062 kb on - strand, within MPMX20_01274 at 1339.117 kb on + strand, within MPMX20_01274 at 1339.125 kb on - strand, within MPMX20_01274 at 1339.125 kb on - strand, within MPMX20_01274 at 1339.167 kb on + strand, within MPMX20_01274 at 1339.193 kb on + strand, within MPMX20_01274 at 1339.246 kb on - strand, within MPMX20_01274 at 1339.248 kb on + strand, within MPMX20_01274 at 1339.256 kb on - strand, within MPMX20_01274 at 1339.346 kb on - strand, within MPMX20_01274 at 1339.400 kb on + strand, within MPMX20_01274 at 1339.551 kb on + strand, within MPMX20_01274 at 1339.687 kb on + strand at 1339.687 kb on + strand at 1339.692 kb on + strand at 1339.692 kb on + strand at 1339.695 kb on - strand at 1339.748 kb on + strand, within MPMX20_01275 at 1339.756 kb on - strand, within MPMX20_01275 at 1339.756 kb on - strand, within MPMX20_01275 at 1339.806 kb on + strand, within MPMX20_01275 at 1339.814 kb on - strand at 1339.844 kb on - strand at 1339.854 kb on - strand at 1339.854 kb on - strand at 1339.854 kb on - strand at 1339.858 kb on + strand at 1339.858 kb on + strand at 1339.866 kb on - strand at 1339.877 kb on + strand at 1339.924 kb on - strand at 1339.931 kb on - strand at 1339.931 kb on - strand at 1339.936 kb on - strand at 1339.965 kb on - strand at 1340.054 kb on - strand, within MPMX20_01276 at 1340.101 kb on + strand, within MPMX20_01276 at 1340.109 kb on - strand, within MPMX20_01276 at 1340.137 kb on + strand, within MPMX20_01276 at 1340.137 kb on + strand, within MPMX20_01276 at 1340.145 kb on - strand, within MPMX20_01276 at 1340.145 kb on - strand, within MPMX20_01276 at 1340.145 kb on - strand, within MPMX20_01276 at 1340.162 kb on + strand, within MPMX20_01276 at 1340.167 kb on - strand, within MPMX20_01276 at 1340.167 kb on - strand, within MPMX20_01276 at 1340.170 kb on - strand, within MPMX20_01276 at 1340.213 kb on + strand, within MPMX20_01276 at 1340.226 kb on + strand, within MPMX20_01276 at 1340.228 kb on + strand, within MPMX20_01276 at 1340.241 kb on + strand, within MPMX20_01276 at 1340.244 kb on - strand, within MPMX20_01276 at 1340.244 kb on - strand, within MPMX20_01276 at 1340.292 kb on + strand, within MPMX20_01276 at 1340.327 kb on - strand, within MPMX20_01276 at 1340.384 kb on + strand at 1340.392 kb on - strand at 1340.446 kb on + strand at 1340.446 kb on + strand at 1340.464 kb on + strand at 1340.464 kb on - strand at 1340.472 kb on - strand at 1340.476 kb on + strand at 1340.483 kb on + strand at 1340.491 kb on - strand at 1340.581 kb on + strand at 1340.610 kb on - strand at 1340.618 kb on + strand at 1340.702 kb on + strand at 1340.704 kb on - strand at 1340.716 kb on - strand, within MPMX20_01277 at 1340.802 kb on + strand, within MPMX20_01277 at 1340.802 kb on + strand, within MPMX20_01277 at 1340.821 kb on + strand, within MPMX20_01277 at 1340.821 kb on + strand, within MPMX20_01277 at 1340.821 kb on + strand, within MPMX20_01277 at 1340.829 kb on - strand, within MPMX20_01277 at 1340.829 kb on - strand, within MPMX20_01277 at 1340.829 kb on - strand, within MPMX20_01277 at 1340.829 kb on - strand, within MPMX20_01277 at 1340.829 kb on - strand, within MPMX20_01277 at 1340.829 kb on - strand, within MPMX20_01277 at 1340.829 kb on - strand, within MPMX20_01277 at 1340.844 kb on - strand, within MPMX20_01277 at 1340.846 kb on - strand, within MPMX20_01277 at 1340.861 kb on - strand, within MPMX20_01277 at 1340.983 kb on + strand, within MPMX20_01277 at 1341.060 kb on - strand, within MPMX20_01277 at 1341.070 kb on - strand, within MPMX20_01277 at 1341.092 kb on + strand, within MPMX20_01277 at 1341.092 kb on + strand, within MPMX20_01277 at 1341.100 kb on - strand, within MPMX20_01277 at 1341.141 kb on + strand, within MPMX20_01277 at 1341.159 kb on - strand, within MPMX20_01277 at 1341.161 kb on + strand, within MPMX20_01277 at 1341.169 kb on - strand, within MPMX20_01277 at 1341.187 kb on - strand, within MPMX20_01277 at 1341.209 kb on + strand, within MPMX20_01277 at 1341.209 kb on + strand, within MPMX20_01277 at 1341.209 kb on + strand, within MPMX20_01277 at 1341.209 kb on + strand, within MPMX20_01277 at 1341.209 kb on + strand, within MPMX20_01277 at 1341.209 kb on + strand, within MPMX20_01277 at 1341.209 kb on + strand, within MPMX20_01277 at 1341.211 kb on + strand, within MPMX20_01277 at 1341.217 kb on - strand, within MPMX20_01277 at 1341.217 kb on - strand, within MPMX20_01277 at 1341.217 kb on - strand, within MPMX20_01277 at 1341.219 kb on - strand, within MPMX20_01277 at 1341.329 kb on + strand, within MPMX20_01277 at 1341.334 kb on + strand, within MPMX20_01277 at 1341.357 kb on + strand, within MPMX20_01277 at 1341.367 kb on + strand, within MPMX20_01277
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021 remove 1,338,984 - MPMX20_01274 0.40 +0.3 1,338,989 - MPMX20_01274 0.41 +1.1 1,339,062 - MPMX20_01274 0.47 +0.2 1,339,117 + MPMX20_01274 0.51 +1.0 1,339,125 - MPMX20_01274 0.52 -0.7 1,339,125 - MPMX20_01274 0.52 -0.9 1,339,167 + MPMX20_01274 0.55 -0.8 1,339,193 + MPMX20_01274 0.57 +0.9 1,339,246 - MPMX20_01274 0.62 +1.5 1,339,248 + MPMX20_01274 0.62 +0.2 1,339,256 - MPMX20_01274 0.62 +1.2 1,339,346 - MPMX20_01274 0.70 -0.3 1,339,400 + MPMX20_01274 0.74 -0.6 1,339,551 + MPMX20_01274 0.86 -0.4 1,339,687 + +0.6 1,339,687 + -0.7 1,339,692 + -0.4 1,339,692 + +0.2 1,339,695 - -0.0 1,339,748 + MPMX20_01275 0.18 -1.0 1,339,756 - MPMX20_01275 0.27 -0.3 1,339,756 - MPMX20_01275 0.27 +1.2 1,339,806 + MPMX20_01275 0.82 +0.2 1,339,814 - +0.1 1,339,844 - -0.1 1,339,854 - +1.2 1,339,854 - +1.2 1,339,854 - +0.2 1,339,858 + -0.7 1,339,858 + +0.2 1,339,866 - +0.6 1,339,877 + +0.5 1,339,924 - -1.2 1,339,931 - +0.0 1,339,931 - +0.2 1,339,936 - -2.0 1,339,965 - -0.9 1,340,054 - MPMX20_01276 0.23 +0.1 1,340,101 + MPMX20_01276 0.35 -0.1 1,340,109 - MPMX20_01276 0.36 -1.0 1,340,137 + MPMX20_01276 0.43 +1.4 1,340,137 + MPMX20_01276 0.43 -0.6 1,340,145 - MPMX20_01276 0.45 -1.6 1,340,145 - MPMX20_01276 0.45 -0.1 1,340,145 - MPMX20_01276 0.45 +1.8 1,340,162 + MPMX20_01276 0.49 +0.5 1,340,167 - MPMX20_01276 0.51 +0.2 1,340,167 - MPMX20_01276 0.51 -0.1 1,340,170 - MPMX20_01276 0.51 +0.6 1,340,213 + MPMX20_01276 0.62 -0.0 1,340,226 + MPMX20_01276 0.65 -0.8 1,340,228 + MPMX20_01276 0.65 -1.4 1,340,241 + MPMX20_01276 0.69 +0.1 1,340,244 - MPMX20_01276 0.69 -0.6 1,340,244 - MPMX20_01276 0.69 +0.7 1,340,292 + MPMX20_01276 0.81 -0.6 1,340,327 - MPMX20_01276 0.90 +0.8 1,340,384 + +0.6 1,340,392 - +0.0 1,340,446 + +2.2 1,340,446 + +0.0 1,340,464 + -0.4 1,340,464 - -1.5 1,340,472 - +1.0 1,340,476 + -0.4 1,340,483 + +1.2 1,340,491 - +0.4 1,340,581 + +0.6 1,340,610 - +1.6 1,340,618 + +2.5 1,340,702 + -0.0 1,340,704 - -0.1 1,340,716 - MPMX20_01277 0.11 -1.1 1,340,802 + MPMX20_01277 0.21 -1.1 1,340,802 + MPMX20_01277 0.21 -0.0 1,340,821 + MPMX20_01277 0.24 -0.4 1,340,821 + MPMX20_01277 0.24 -0.5 1,340,821 + MPMX20_01277 0.24 -0.4 1,340,829 - MPMX20_01277 0.25 +1.2 1,340,829 - MPMX20_01277 0.25 -0.1 1,340,829 - MPMX20_01277 0.25 +0.4 1,340,829 - MPMX20_01277 0.25 +0.2 1,340,829 - MPMX20_01277 0.25 -2.1 1,340,829 - MPMX20_01277 0.25 +1.3 1,340,829 - MPMX20_01277 0.25 -1.1 1,340,844 - MPMX20_01277 0.26 -1.1 1,340,846 - MPMX20_01277 0.27 +0.6 1,340,861 - MPMX20_01277 0.29 +0.5 1,340,983 + MPMX20_01277 0.43 -0.5 1,341,060 - MPMX20_01277 0.52 +0.6 1,341,070 - MPMX20_01277 0.54 +0.0 1,341,092 + MPMX20_01277 0.56 +0.6 1,341,092 + MPMX20_01277 0.56 -2.5 1,341,100 - MPMX20_01277 0.57 +0.1 1,341,141 + MPMX20_01277 0.62 -1.7 1,341,159 - MPMX20_01277 0.64 +0.9 1,341,161 + MPMX20_01277 0.65 +1.2 1,341,169 - MPMX20_01277 0.66 +1.2 1,341,187 - MPMX20_01277 0.68 +1.2 1,341,209 + MPMX20_01277 0.70 +0.3 1,341,209 + MPMX20_01277 0.70 -1.2 1,341,209 + MPMX20_01277 0.70 -0.4 1,341,209 + MPMX20_01277 0.70 +1.2 1,341,209 + MPMX20_01277 0.70 -0.4 1,341,209 + MPMX20_01277 0.70 +1.3 1,341,209 + MPMX20_01277 0.70 -1.4 1,341,211 + MPMX20_01277 0.71 +0.2 1,341,217 - MPMX20_01277 0.71 -0.4 1,341,217 - MPMX20_01277 0.71 -2.4 1,341,217 - MPMX20_01277 0.71 +0.1 1,341,219 - MPMX20_01277 0.72 -0.5 1,341,329 + MPMX20_01277 0.85 -0.8 1,341,334 + MPMX20_01277 0.85 -0.5 1,341,357 + MPMX20_01277 0.88 +0.8 1,341,367 + MPMX20_01277 0.89 +0.9
Or see this region's nucleotide sequence