Experiment: 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04311 and MPMX20_04312 overlap by 1 nucleotides MPMX20_04312 and MPMX20_04313 are separated by 17 nucleotides
MPMX20_04311: MPMX20_04311 - Glycogen synthase, at 4,502,443 to 4,503,876
_04311
MPMX20_04312: MPMX20_04312 - Glucose-1-phosphate adenylyltransferase, at 4,503,876 to 4,505,171
_04312
MPMX20_04313: MPMX20_04313 - Glycogen debranching enzyme, at 4,505,189 to 4,507,162
_04313
Position (kb)
4503
4504
4505
4506 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4502.885 kb on - strand, within MPMX20_04311 at 4502.899 kb on - strand, within MPMX20_04311 at 4502.929 kb on + strand, within MPMX20_04311 at 4503.015 kb on + strand, within MPMX20_04311 at 4503.015 kb on + strand, within MPMX20_04311 at 4503.023 kb on - strand, within MPMX20_04311 at 4503.023 kb on - strand, within MPMX20_04311 at 4503.149 kb on + strand, within MPMX20_04311 at 4503.160 kb on + strand, within MPMX20_04311 at 4503.244 kb on - strand, within MPMX20_04311 at 4503.261 kb on - strand, within MPMX20_04311 at 4503.263 kb on + strand, within MPMX20_04311 at 4503.263 kb on + strand, within MPMX20_04311 at 4503.306 kb on + strand, within MPMX20_04311 at 4503.399 kb on - strand, within MPMX20_04311 at 4503.474 kb on - strand, within MPMX20_04311 at 4503.474 kb on - strand, within MPMX20_04311 at 4503.483 kb on - strand, within MPMX20_04311 at 4503.524 kb on + strand, within MPMX20_04311 at 4503.527 kb on - strand, within MPMX20_04311 at 4503.533 kb on + strand, within MPMX20_04311 at 4503.533 kb on + strand, within MPMX20_04311 at 4503.659 kb on + strand, within MPMX20_04311 at 4503.681 kb on - strand, within MPMX20_04311 at 4503.759 kb on + strand at 4503.767 kb on - strand at 4503.769 kb on + strand at 4503.769 kb on + strand at 4503.777 kb on - strand at 4503.784 kb on + strand at 4503.857 kb on - strand at 4503.886 kb on + strand at 4503.894 kb on - strand at 4503.946 kb on - strand at 4504.002 kb on - strand at 4504.039 kb on + strand, within MPMX20_04312 at 4504.087 kb on + strand, within MPMX20_04312 at 4504.131 kb on - strand, within MPMX20_04312 at 4504.184 kb on + strand, within MPMX20_04312 at 4504.217 kb on - strand, within MPMX20_04312 at 4504.273 kb on + strand, within MPMX20_04312 at 4504.303 kb on + strand, within MPMX20_04312 at 4504.317 kb on - strand, within MPMX20_04312 at 4504.327 kb on + strand, within MPMX20_04312 at 4504.379 kb on + strand, within MPMX20_04312 at 4504.382 kb on - strand, within MPMX20_04312 at 4504.386 kb on + strand, within MPMX20_04312 at 4504.394 kb on + strand, within MPMX20_04312 at 4504.394 kb on - strand, within MPMX20_04312 at 4504.403 kb on - strand, within MPMX20_04312 at 4504.486 kb on + strand, within MPMX20_04312 at 4504.486 kb on + strand, within MPMX20_04312 at 4504.494 kb on - strand, within MPMX20_04312 at 4504.715 kb on + strand, within MPMX20_04312 at 4504.726 kb on - strand, within MPMX20_04312 at 4504.927 kb on - strand, within MPMX20_04312 at 4504.928 kb on + strand, within MPMX20_04312 at 4504.942 kb on + strand, within MPMX20_04312 at 4504.986 kb on - strand, within MPMX20_04312 at 4504.990 kb on + strand, within MPMX20_04312 at 4504.992 kb on + strand, within MPMX20_04312 at 4505.047 kb on - strand at 4505.156 kb on + strand at 4505.449 kb on + strand, within MPMX20_04313 at 4505.449 kb on + strand, within MPMX20_04313 at 4505.498 kb on + strand, within MPMX20_04313 at 4505.501 kb on - strand, within MPMX20_04313 at 4505.508 kb on + strand, within MPMX20_04313 at 4505.508 kb on + strand, within MPMX20_04313 at 4505.516 kb on - strand, within MPMX20_04313 at 4505.539 kb on - strand, within MPMX20_04313 at 4505.550 kb on + strand, within MPMX20_04313 at 4505.599 kb on - strand, within MPMX20_04313 at 4505.627 kb on - strand, within MPMX20_04313 at 4505.642 kb on - strand, within MPMX20_04313 at 4505.666 kb on - strand, within MPMX20_04313 at 4505.668 kb on + strand, within MPMX20_04313 at 4505.701 kb on + strand, within MPMX20_04313 at 4505.701 kb on + strand, within MPMX20_04313 at 4505.709 kb on - strand, within MPMX20_04313 at 4505.709 kb on - strand, within MPMX20_04313 at 4505.709 kb on - strand, within MPMX20_04313 at 4505.709 kb on - strand, within MPMX20_04313 at 4505.722 kb on - strand, within MPMX20_04313 at 4505.722 kb on - strand, within MPMX20_04313 at 4505.824 kb on - strand, within MPMX20_04313 at 4506.062 kb on - strand, within MPMX20_04313 at 4506.074 kb on - strand, within MPMX20_04313 at 4506.145 kb on - strand, within MPMX20_04313
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021 remove 4,502,885 - MPMX20_04311 0.31 -0.8 4,502,899 - MPMX20_04311 0.32 -0.4 4,502,929 + MPMX20_04311 0.34 -0.4 4,503,015 + MPMX20_04311 0.40 -0.6 4,503,015 + MPMX20_04311 0.40 +0.4 4,503,023 - MPMX20_04311 0.40 -0.9 4,503,023 - MPMX20_04311 0.40 +0.4 4,503,149 + MPMX20_04311 0.49 +1.3 4,503,160 + MPMX20_04311 0.50 -1.0 4,503,244 - MPMX20_04311 0.56 -2.0 4,503,261 - MPMX20_04311 0.57 +0.4 4,503,263 + MPMX20_04311 0.57 -0.9 4,503,263 + MPMX20_04311 0.57 -1.3 4,503,306 + MPMX20_04311 0.60 -1.1 4,503,399 - MPMX20_04311 0.67 -1.5 4,503,474 - MPMX20_04311 0.72 +0.1 4,503,474 - MPMX20_04311 0.72 -1.6 4,503,483 - MPMX20_04311 0.73 +0.2 4,503,524 + MPMX20_04311 0.75 -1.0 4,503,527 - MPMX20_04311 0.76 +1.6 4,503,533 + MPMX20_04311 0.76 -2.0 4,503,533 + MPMX20_04311 0.76 +0.6 4,503,659 + MPMX20_04311 0.85 -0.4 4,503,681 - MPMX20_04311 0.86 +0.1 4,503,759 + -1.6 4,503,767 - -0.8 4,503,769 + -1.7 4,503,769 + -0.1 4,503,777 - +0.0 4,503,784 + -0.8 4,503,857 - -1.3 4,503,886 + +1.0 4,503,894 - -0.5 4,503,946 - -0.6 4,504,002 - -1.3 4,504,039 + MPMX20_04312 0.13 -1.2 4,504,087 + MPMX20_04312 0.16 -0.9 4,504,131 - MPMX20_04312 0.20 -1.6 4,504,184 + MPMX20_04312 0.24 -1.4 4,504,217 - MPMX20_04312 0.26 -1.2 4,504,273 + MPMX20_04312 0.31 -2.8 4,504,303 + MPMX20_04312 0.33 -0.9 4,504,317 - MPMX20_04312 0.34 -0.7 4,504,327 + MPMX20_04312 0.35 -2.0 4,504,379 + MPMX20_04312 0.39 -1.8 4,504,382 - MPMX20_04312 0.39 -0.6 4,504,386 + MPMX20_04312 0.39 -0.6 4,504,394 + MPMX20_04312 0.40 -0.3 4,504,394 - MPMX20_04312 0.40 -0.3 4,504,403 - MPMX20_04312 0.41 -0.4 4,504,486 + MPMX20_04312 0.47 -1.3 4,504,486 + MPMX20_04312 0.47 -2.8 4,504,494 - MPMX20_04312 0.48 -0.7 4,504,715 + MPMX20_04312 0.65 +0.8 4,504,726 - MPMX20_04312 0.66 -0.3 4,504,927 - MPMX20_04312 0.81 -1.2 4,504,928 + MPMX20_04312 0.81 +3.6 4,504,942 + MPMX20_04312 0.82 -0.9 4,504,986 - MPMX20_04312 0.86 -0.7 4,504,990 + MPMX20_04312 0.86 +3.0 4,504,992 + MPMX20_04312 0.86 -0.2 4,505,047 - -0.5 4,505,156 + -0.6 4,505,449 + MPMX20_04313 0.13 +0.3 4,505,449 + MPMX20_04313 0.13 +0.7 4,505,498 + MPMX20_04313 0.16 -1.4 4,505,501 - MPMX20_04313 0.16 +0.6 4,505,508 + MPMX20_04313 0.16 -0.9 4,505,508 + MPMX20_04313 0.16 -2.1 4,505,516 - MPMX20_04313 0.17 +1.6 4,505,539 - MPMX20_04313 0.18 -2.4 4,505,550 + MPMX20_04313 0.18 -0.7 4,505,599 - MPMX20_04313 0.21 -0.4 4,505,627 - MPMX20_04313 0.22 +0.3 4,505,642 - MPMX20_04313 0.23 -0.4 4,505,666 - MPMX20_04313 0.24 -1.4 4,505,668 + MPMX20_04313 0.24 -0.7 4,505,701 + MPMX20_04313 0.26 -0.8 4,505,701 + MPMX20_04313 0.26 -1.6 4,505,709 - MPMX20_04313 0.26 -1.9 4,505,709 - MPMX20_04313 0.26 -1.0 4,505,709 - MPMX20_04313 0.26 +0.1 4,505,709 - MPMX20_04313 0.26 +1.2 4,505,722 - MPMX20_04313 0.27 +3.0 4,505,722 - MPMX20_04313 0.27 -0.9 4,505,824 - MPMX20_04313 0.32 -1.0 4,506,062 - MPMX20_04313 0.44 +0.2 4,506,074 - MPMX20_04313 0.45 -0.2 4,506,145 - MPMX20_04313 0.48 +1.0
Or see this region's nucleotide sequence