Experiment: 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03615 and MPMX20_03616 are separated by 63 nucleotides MPMX20_03616 and MPMX20_03617 are separated by 66 nucleotides MPMX20_03617 and MPMX20_03618 are separated by 174 nucleotides MPMX20_03618 and MPMX20_03619 are separated by 113 nucleotides
MPMX20_03615: MPMX20_03615 - Carbamoyl dehydratase HypE, at 3,804,105 to 3,805,115
_03615
MPMX20_03616: MPMX20_03616 - Formate hydrogenlyase transcriptional activator, at 3,805,179 to 3,807,251
_03616
MPMX20_03617: MPMX20_03617 - hypothetical protein, at 3,807,318 to 3,807,662
_03617
MPMX20_03618: MPMX20_03618 - Endoribonuclease SymE, at 3,807,837 to 3,808,067
_03618
MPMX20_03619: MPMX20_03619 - DNA mismatch repair protein MutS, at 3,808,181 to 3,810,742
_03619
Position (kb)
3805
3806
3807
3808 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 3804.191 kb on + strand at 3804.199 kb on - strand at 3804.353 kb on - strand, within MPMX20_03615 at 3804.372 kb on + strand, within MPMX20_03615 at 3804.380 kb on - strand, within MPMX20_03615 at 3804.393 kb on + strand, within MPMX20_03615 at 3804.394 kb on + strand, within MPMX20_03615 at 3804.446 kb on - strand, within MPMX20_03615 at 3804.520 kb on - strand, within MPMX20_03615 at 3804.531 kb on + strand, within MPMX20_03615 at 3804.559 kb on - strand, within MPMX20_03615 at 3804.651 kb on + strand, within MPMX20_03615 at 3804.669 kb on + strand, within MPMX20_03615 at 3804.669 kb on + strand, within MPMX20_03615 at 3804.678 kb on - strand, within MPMX20_03615 at 3804.708 kb on + strand, within MPMX20_03615 at 3804.708 kb on + strand, within MPMX20_03615 at 3804.716 kb on - strand, within MPMX20_03615 at 3804.782 kb on + strand, within MPMX20_03615 at 3804.803 kb on + strand, within MPMX20_03615 at 3804.819 kb on + strand, within MPMX20_03615 at 3804.834 kb on - strand, within MPMX20_03615 at 3804.908 kb on - strand, within MPMX20_03615 at 3804.972 kb on - strand, within MPMX20_03615 at 3804.974 kb on + strand, within MPMX20_03615 at 3804.979 kb on + strand, within MPMX20_03615 at 3805.010 kb on + strand, within MPMX20_03615 at 3805.028 kb on + strand at 3805.033 kb on + strand at 3805.095 kb on + strand at 3805.174 kb on + strand at 3805.182 kb on - strand at 3805.206 kb on + strand at 3805.220 kb on + strand at 3805.239 kb on + strand at 3805.248 kb on - strand at 3805.276 kb on - strand at 3805.339 kb on + strand at 3805.339 kb on + strand at 3805.339 kb on + strand at 3805.339 kb on + strand at 3805.339 kb on + strand at 3805.341 kb on - strand at 3805.347 kb on - strand at 3805.409 kb on - strand, within MPMX20_03616 at 3805.409 kb on - strand, within MPMX20_03616 at 3805.431 kb on - strand, within MPMX20_03616 at 3805.468 kb on + strand, within MPMX20_03616 at 3805.553 kb on + strand, within MPMX20_03616 at 3805.607 kb on + strand, within MPMX20_03616 at 3805.607 kb on + strand, within MPMX20_03616 at 3805.608 kb on - strand, within MPMX20_03616 at 3805.640 kb on + strand, within MPMX20_03616 at 3805.650 kb on - strand, within MPMX20_03616 at 3805.660 kb on - strand, within MPMX20_03616 at 3805.752 kb on + strand, within MPMX20_03616 at 3805.844 kb on + strand, within MPMX20_03616 at 3805.856 kb on + strand, within MPMX20_03616 at 3805.876 kb on - strand, within MPMX20_03616 at 3805.888 kb on - strand, within MPMX20_03616 at 3805.913 kb on + strand, within MPMX20_03616 at 3805.913 kb on + strand, within MPMX20_03616 at 3805.921 kb on - strand, within MPMX20_03616 at 3805.921 kb on - strand, within MPMX20_03616 at 3805.921 kb on - strand, within MPMX20_03616 at 3805.924 kb on + strand, within MPMX20_03616 at 3805.924 kb on + strand, within MPMX20_03616 at 3805.932 kb on - strand, within MPMX20_03616 at 3806.005 kb on - strand, within MPMX20_03616 at 3806.023 kb on - strand, within MPMX20_03616 at 3806.088 kb on + strand, within MPMX20_03616 at 3806.134 kb on + strand, within MPMX20_03616 at 3806.137 kb on + strand, within MPMX20_03616 at 3806.208 kb on - strand, within MPMX20_03616 at 3806.210 kb on + strand, within MPMX20_03616 at 3806.337 kb on + strand, within MPMX20_03616 at 3806.337 kb on + strand, within MPMX20_03616 at 3806.337 kb on + strand, within MPMX20_03616 at 3806.345 kb on - strand, within MPMX20_03616 at 3806.345 kb on - strand, within MPMX20_03616 at 3806.345 kb on - strand, within MPMX20_03616 at 3806.368 kb on - strand, within MPMX20_03616 at 3806.368 kb on - strand, within MPMX20_03616 at 3806.391 kb on + strand, within MPMX20_03616 at 3806.391 kb on + strand, within MPMX20_03616 at 3806.394 kb on - strand, within MPMX20_03616 at 3806.399 kb on - strand, within MPMX20_03616 at 3806.467 kb on - strand, within MPMX20_03616 at 3806.499 kb on - strand, within MPMX20_03616 at 3806.513 kb on + strand, within MPMX20_03616 at 3806.571 kb on + strand, within MPMX20_03616 at 3806.579 kb on - strand, within MPMX20_03616 at 3806.579 kb on - strand, within MPMX20_03616 at 3806.635 kb on + strand, within MPMX20_03616 at 3806.648 kb on + strand, within MPMX20_03616 at 3806.841 kb on - strand, within MPMX20_03616 at 3806.855 kb on - strand, within MPMX20_03616 at 3806.953 kb on - strand, within MPMX20_03616 at 3807.076 kb on - strand at 3807.137 kb on + strand at 3807.145 kb on - strand at 3807.155 kb on - strand at 3807.239 kb on - strand at 3807.239 kb on - strand at 3807.249 kb on - strand at 3807.249 kb on - strand at 3807.251 kb on + strand at 3807.419 kb on + strand, within MPMX20_03617 at 3807.427 kb on - strand, within MPMX20_03617 at 3807.427 kb on - strand, within MPMX20_03617 at 3807.488 kb on + strand, within MPMX20_03617 at 3807.606 kb on - strand, within MPMX20_03617 at 3807.606 kb on - strand, within MPMX20_03617 at 3807.606 kb on - strand, within MPMX20_03617 at 3807.610 kb on - strand, within MPMX20_03617 at 3807.728 kb on + strand at 3807.762 kb on - strand at 3807.762 kb on - strand at 3807.908 kb on + strand, within MPMX20_03618 at 3807.932 kb on - strand, within MPMX20_03618 at 3807.948 kb on + strand, within MPMX20_03618 at 3808.002 kb on - strand, within MPMX20_03618 at 3808.004 kb on + strand, within MPMX20_03618 at 3808.004 kb on + strand, within MPMX20_03618 at 3808.012 kb on - strand, within MPMX20_03618 at 3808.012 kb on - strand, within MPMX20_03618 at 3808.117 kb on - strand at 3808.220 kb on + strand at 3808.238 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021 remove 3,804,191 + -0.5 3,804,199 - -2.9 3,804,353 - MPMX20_03615 0.25 -1.2 3,804,372 + MPMX20_03615 0.26 -0.8 3,804,380 - MPMX20_03615 0.27 +0.3 3,804,393 + MPMX20_03615 0.28 +0.4 3,804,394 + MPMX20_03615 0.29 +2.1 3,804,446 - MPMX20_03615 0.34 -0.6 3,804,520 - MPMX20_03615 0.41 -0.3 3,804,531 + MPMX20_03615 0.42 +2.4 3,804,559 - MPMX20_03615 0.45 -1.1 3,804,651 + MPMX20_03615 0.54 +0.5 3,804,669 + MPMX20_03615 0.56 +0.1 3,804,669 + MPMX20_03615 0.56 +0.1 3,804,678 - MPMX20_03615 0.57 +1.5 3,804,708 + MPMX20_03615 0.60 -1.8 3,804,708 + MPMX20_03615 0.60 -1.3 3,804,716 - MPMX20_03615 0.60 -0.8 3,804,782 + MPMX20_03615 0.67 +0.0 3,804,803 + MPMX20_03615 0.69 -1.9 3,804,819 + MPMX20_03615 0.71 +1.2 3,804,834 - MPMX20_03615 0.72 +0.7 3,804,908 - MPMX20_03615 0.79 +0.2 3,804,972 - MPMX20_03615 0.86 +0.3 3,804,974 + MPMX20_03615 0.86 -0.1 3,804,979 + MPMX20_03615 0.86 +0.5 3,805,010 + MPMX20_03615 0.90 +0.1 3,805,028 + +2.5 3,805,033 + +6.2 3,805,095 + -1.8 3,805,174 + -1.3 3,805,182 - +1.4 3,805,206 + -0.0 3,805,220 + +1.1 3,805,239 + -0.2 3,805,248 - +1.5 3,805,276 - +0.9 3,805,339 + +1.7 3,805,339 + -1.4 3,805,339 + -0.2 3,805,339 + -0.5 3,805,339 + -1.6 3,805,341 - +0.3 3,805,347 - +0.8 3,805,409 - MPMX20_03616 0.11 -0.4 3,805,409 - MPMX20_03616 0.11 +0.8 3,805,431 - MPMX20_03616 0.12 -0.6 3,805,468 + MPMX20_03616 0.14 +0.1 3,805,553 + MPMX20_03616 0.18 +0.6 3,805,607 + MPMX20_03616 0.21 +2.0 3,805,607 + MPMX20_03616 0.21 -0.5 3,805,608 - MPMX20_03616 0.21 -0.3 3,805,640 + MPMX20_03616 0.22 +0.1 3,805,650 - MPMX20_03616 0.23 -3.0 3,805,660 - MPMX20_03616 0.23 -0.2 3,805,752 + MPMX20_03616 0.28 +0.3 3,805,844 + MPMX20_03616 0.32 +0.3 3,805,856 + MPMX20_03616 0.33 -2.1 3,805,876 - MPMX20_03616 0.34 +0.2 3,805,888 - MPMX20_03616 0.34 -0.6 3,805,913 + MPMX20_03616 0.35 -0.5 3,805,913 + MPMX20_03616 0.35 +0.7 3,805,921 - MPMX20_03616 0.36 +0.1 3,805,921 - MPMX20_03616 0.36 -1.9 3,805,921 - MPMX20_03616 0.36 -0.7 3,805,924 + MPMX20_03616 0.36 +0.5 3,805,924 + MPMX20_03616 0.36 -0.7 3,805,932 - MPMX20_03616 0.36 -0.9 3,806,005 - MPMX20_03616 0.40 +0.3 3,806,023 - MPMX20_03616 0.41 -0.1 3,806,088 + MPMX20_03616 0.44 +0.1 3,806,134 + MPMX20_03616 0.46 -0.7 3,806,137 + MPMX20_03616 0.46 +1.5 3,806,208 - MPMX20_03616 0.50 -0.2 3,806,210 + MPMX20_03616 0.50 +0.2 3,806,337 + MPMX20_03616 0.56 -0.9 3,806,337 + MPMX20_03616 0.56 -1.6 3,806,337 + MPMX20_03616 0.56 +2.1 3,806,345 - MPMX20_03616 0.56 -1.7 3,806,345 - MPMX20_03616 0.56 -0.5 3,806,345 - MPMX20_03616 0.56 +2.1 3,806,368 - MPMX20_03616 0.57 -0.8 3,806,368 - MPMX20_03616 0.57 +0.9 3,806,391 + MPMX20_03616 0.58 +0.5 3,806,391 + MPMX20_03616 0.58 -0.5 3,806,394 - MPMX20_03616 0.59 +0.1 3,806,399 - MPMX20_03616 0.59 -0.2 3,806,467 - MPMX20_03616 0.62 -1.3 3,806,499 - MPMX20_03616 0.64 -0.2 3,806,513 + MPMX20_03616 0.64 -1.1 3,806,571 + MPMX20_03616 0.67 +0.9 3,806,579 - MPMX20_03616 0.68 -0.5 3,806,579 - MPMX20_03616 0.68 -1.4 3,806,635 + MPMX20_03616 0.70 -1.2 3,806,648 + MPMX20_03616 0.71 -0.6 3,806,841 - MPMX20_03616 0.80 -0.7 3,806,855 - MPMX20_03616 0.81 -0.8 3,806,953 - MPMX20_03616 0.86 +0.1 3,807,076 - +0.0 3,807,137 + -0.6 3,807,145 - +2.5 3,807,155 - +0.7 3,807,239 - +0.9 3,807,239 - +2.1 3,807,249 - +0.7 3,807,249 - -1.0 3,807,251 + +0.2 3,807,419 + MPMX20_03617 0.29 -1.6 3,807,427 - MPMX20_03617 0.32 -0.4 3,807,427 - MPMX20_03617 0.32 -1.2 3,807,488 + MPMX20_03617 0.49 -0.1 3,807,606 - MPMX20_03617 0.83 -0.8 3,807,606 - MPMX20_03617 0.83 +1.7 3,807,606 - MPMX20_03617 0.83 -1.7 3,807,610 - MPMX20_03617 0.85 -1.1 3,807,728 + +0.1 3,807,762 - -1.1 3,807,762 - -2.5 3,807,908 + MPMX20_03618 0.31 +0.0 3,807,932 - MPMX20_03618 0.41 +0.5 3,807,948 + MPMX20_03618 0.48 +0.3 3,808,002 - MPMX20_03618 0.71 -0.4 3,808,004 + MPMX20_03618 0.72 -0.2 3,808,004 + MPMX20_03618 0.72 +0.1 3,808,012 - MPMX20_03618 0.76 +0.5 3,808,012 - MPMX20_03618 0.76 +0.2 3,808,117 - +0.6 3,808,220 + -2.1 3,808,238 - -1.7
Or see this region's nucleotide sequence