Experiment: 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02773 and MPMX20_02774 are separated by 51 nucleotides MPMX20_02774 and MPMX20_02775 are separated by 40 nucleotides MPMX20_02775 and MPMX20_02776 overlap by 4 nucleotides
MPMX20_02773: MPMX20_02773 - hypothetical protein, at 2,927,781 to 2,928,599
_02773
MPMX20_02774: MPMX20_02774 - Inner membrane protein YecN, at 2,928,651 to 2,929,046
_02774
MPMX20_02775: MPMX20_02775 - Carboxy-S-adenosyl-L-methionine synthase, at 2,929,087 to 2,929,830
_02775
MPMX20_02776: MPMX20_02776 - tRNA U34 carboxymethyltransferase, at 2,929,827 to 2,930,798
_02776
Position (kb)
2929
2930 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2928.094 kb on + strand, within MPMX20_02773 at 2928.094 kb on + strand, within MPMX20_02773 at 2928.094 kb on + strand, within MPMX20_02773 at 2928.094 kb on + strand, within MPMX20_02773 at 2928.094 kb on + strand, within MPMX20_02773 at 2928.094 kb on + strand, within MPMX20_02773 at 2928.094 kb on + strand, within MPMX20_02773 at 2928.102 kb on - strand, within MPMX20_02773 at 2928.102 kb on - strand, within MPMX20_02773 at 2928.102 kb on - strand, within MPMX20_02773 at 2928.102 kb on - strand, within MPMX20_02773 at 2928.102 kb on - strand, within MPMX20_02773 at 2928.102 kb on - strand, within MPMX20_02773 at 2928.102 kb on - strand, within MPMX20_02773 at 2928.102 kb on - strand, within MPMX20_02773 at 2928.102 kb on - strand, within MPMX20_02773 at 2928.102 kb on - strand, within MPMX20_02773 at 2928.102 kb on - strand, within MPMX20_02773 at 2928.102 kb on - strand, within MPMX20_02773 at 2928.163 kb on + strand, within MPMX20_02773 at 2928.171 kb on - strand, within MPMX20_02773 at 2928.178 kb on - strand, within MPMX20_02773 at 2928.213 kb on + strand, within MPMX20_02773 at 2928.213 kb on + strand, within MPMX20_02773 at 2928.221 kb on - strand, within MPMX20_02773 at 2928.241 kb on + strand, within MPMX20_02773 at 2928.270 kb on + strand, within MPMX20_02773 at 2928.278 kb on - strand, within MPMX20_02773 at 2928.326 kb on + strand, within MPMX20_02773 at 2928.465 kb on - strand, within MPMX20_02773 at 2928.502 kb on + strand, within MPMX20_02773 at 2928.502 kb on + strand, within MPMX20_02773 at 2928.510 kb on - strand, within MPMX20_02773 at 2928.510 kb on - strand, within MPMX20_02773 at 2928.510 kb on - strand, within MPMX20_02773 at 2928.510 kb on - strand, within MPMX20_02773 at 2928.582 kb on - strand at 2928.605 kb on + strand at 2928.656 kb on - strand at 2928.679 kb on + strand at 2928.729 kb on - strand, within MPMX20_02774 at 2928.791 kb on + strand, within MPMX20_02774 at 2928.801 kb on + strand, within MPMX20_02774 at 2928.809 kb on - strand, within MPMX20_02774 at 2928.809 kb on - strand, within MPMX20_02774 at 2928.812 kb on - strand, within MPMX20_02774 at 2928.860 kb on + strand, within MPMX20_02774 at 2928.860 kb on + strand, within MPMX20_02774 at 2928.870 kb on + strand, within MPMX20_02774 at 2928.877 kb on + strand, within MPMX20_02774 at 2928.878 kb on - strand, within MPMX20_02774 at 2928.885 kb on - strand, within MPMX20_02774 at 2928.885 kb on - strand, within MPMX20_02774 at 2928.937 kb on - strand, within MPMX20_02774 at 2929.004 kb on + strand, within MPMX20_02774 at 2929.012 kb on - strand at 2929.012 kb on - strand at 2929.046 kb on + strand at 2929.121 kb on + strand at 2929.135 kb on - strand at 2929.192 kb on + strand, within MPMX20_02775 at 2929.233 kb on + strand, within MPMX20_02775 at 2929.270 kb on + strand, within MPMX20_02775 at 2929.270 kb on + strand, within MPMX20_02775 at 2929.356 kb on - strand, within MPMX20_02775 at 2929.504 kb on + strand, within MPMX20_02775 at 2929.512 kb on - strand, within MPMX20_02775 at 2929.512 kb on - strand, within MPMX20_02775 at 2929.743 kb on - strand, within MPMX20_02775 at 2929.748 kb on - strand, within MPMX20_02775 at 2929.754 kb on - strand, within MPMX20_02775 at 2929.759 kb on - strand at 2929.804 kb on - strand at 2929.814 kb on - strand at 2929.907 kb on - strand at 2929.993 kb on + strand, within MPMX20_02776 at 2929.993 kb on + strand, within MPMX20_02776 at 2929.993 kb on + strand, within MPMX20_02776 at 2930.011 kb on - strand, within MPMX20_02776 at 2930.034 kb on - strand, within MPMX20_02776 at 2930.093 kb on + strand, within MPMX20_02776 at 2930.134 kb on - strand, within MPMX20_02776 at 2930.156 kb on - strand, within MPMX20_02776 at 2930.187 kb on - strand, within MPMX20_02776 at 2930.187 kb on - strand, within MPMX20_02776 at 2930.206 kb on - strand, within MPMX20_02776 at 2930.276 kb on + strand, within MPMX20_02776 at 2930.284 kb on - strand, within MPMX20_02776 at 2930.296 kb on + strand, within MPMX20_02776 at 2930.314 kb on - strand, within MPMX20_02776 at 2930.332 kb on + strand, within MPMX20_02776 at 2930.354 kb on + strand, within MPMX20_02776 at 2930.373 kb on - strand, within MPMX20_02776 at 2930.653 kb on + strand, within MPMX20_02776 at 2930.673 kb on - strand, within MPMX20_02776 at 2930.683 kb on - strand, within MPMX20_02776 at 2930.745 kb on + strand at 2930.745 kb on + strand at 2930.753 kb on - strand at 2930.775 kb on + strand at 2930.783 kb on - strand at 2930.815 kb on + strand at 2930.815 kb on + strand at 2930.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021 remove 2,928,094 + MPMX20_02773 0.38 -1.0 2,928,094 + MPMX20_02773 0.38 -0.5 2,928,094 + MPMX20_02773 0.38 +0.7 2,928,094 + MPMX20_02773 0.38 -0.0 2,928,094 + MPMX20_02773 0.38 +0.4 2,928,094 + MPMX20_02773 0.38 -1.8 2,928,094 + MPMX20_02773 0.38 +1.4 2,928,102 - MPMX20_02773 0.39 -0.8 2,928,102 - MPMX20_02773 0.39 -1.3 2,928,102 - MPMX20_02773 0.39 +0.2 2,928,102 - MPMX20_02773 0.39 -0.1 2,928,102 - MPMX20_02773 0.39 +0.3 2,928,102 - MPMX20_02773 0.39 -0.4 2,928,102 - MPMX20_02773 0.39 +0.1 2,928,102 - MPMX20_02773 0.39 -0.4 2,928,102 - MPMX20_02773 0.39 +1.0 2,928,102 - MPMX20_02773 0.39 +0.8 2,928,102 - MPMX20_02773 0.39 +0.6 2,928,102 - MPMX20_02773 0.39 -0.1 2,928,163 + MPMX20_02773 0.47 -0.8 2,928,171 - MPMX20_02773 0.48 -0.3 2,928,178 - MPMX20_02773 0.48 -0.6 2,928,213 + MPMX20_02773 0.53 +1.0 2,928,213 + MPMX20_02773 0.53 +1.8 2,928,221 - MPMX20_02773 0.54 -0.3 2,928,241 + MPMX20_02773 0.56 -0.7 2,928,270 + MPMX20_02773 0.60 +0.3 2,928,278 - MPMX20_02773 0.61 -1.0 2,928,326 + MPMX20_02773 0.67 -0.1 2,928,465 - MPMX20_02773 0.84 +1.0 2,928,502 + MPMX20_02773 0.88 -0.3 2,928,502 + MPMX20_02773 0.88 -0.9 2,928,510 - MPMX20_02773 0.89 -1.0 2,928,510 - MPMX20_02773 0.89 -0.6 2,928,510 - MPMX20_02773 0.89 -1.0 2,928,510 - MPMX20_02773 0.89 +0.5 2,928,582 - -1.7 2,928,605 + +0.9 2,928,656 - +1.1 2,928,679 + +0.4 2,928,729 - MPMX20_02774 0.20 -1.5 2,928,791 + MPMX20_02774 0.35 -1.1 2,928,801 + MPMX20_02774 0.38 -0.8 2,928,809 - MPMX20_02774 0.40 -1.1 2,928,809 - MPMX20_02774 0.40 -1.8 2,928,812 - MPMX20_02774 0.41 -0.7 2,928,860 + MPMX20_02774 0.53 -1.0 2,928,860 + MPMX20_02774 0.53 -0.2 2,928,870 + MPMX20_02774 0.55 -1.0 2,928,877 + MPMX20_02774 0.57 -1.0 2,928,878 - MPMX20_02774 0.57 -0.1 2,928,885 - MPMX20_02774 0.59 -0.7 2,928,885 - MPMX20_02774 0.59 -0.6 2,928,937 - MPMX20_02774 0.72 +1.8 2,929,004 + MPMX20_02774 0.89 +1.4 2,929,012 - +0.4 2,929,012 - -0.3 2,929,046 + +0.4 2,929,121 + -0.1 2,929,135 - -0.8 2,929,192 + MPMX20_02775 0.14 -0.6 2,929,233 + MPMX20_02775 0.20 -0.3 2,929,270 + MPMX20_02775 0.25 -1.5 2,929,270 + MPMX20_02775 0.25 -1.2 2,929,356 - MPMX20_02775 0.36 -1.1 2,929,504 + MPMX20_02775 0.56 -2.0 2,929,512 - MPMX20_02775 0.57 -0.2 2,929,512 - MPMX20_02775 0.57 -2.1 2,929,743 - MPMX20_02775 0.88 -1.9 2,929,748 - MPMX20_02775 0.89 -0.9 2,929,754 - MPMX20_02775 0.90 -0.2 2,929,759 - -1.9 2,929,804 - -0.9 2,929,814 - -0.4 2,929,907 - -0.9 2,929,993 + MPMX20_02776 0.17 -2.1 2,929,993 + MPMX20_02776 0.17 -1.7 2,929,993 + MPMX20_02776 0.17 +0.2 2,930,011 - MPMX20_02776 0.19 -1.4 2,930,034 - MPMX20_02776 0.21 +0.8 2,930,093 + MPMX20_02776 0.27 -0.3 2,930,134 - MPMX20_02776 0.32 -1.1 2,930,156 - MPMX20_02776 0.34 +0.6 2,930,187 - MPMX20_02776 0.37 -2.3 2,930,187 - MPMX20_02776 0.37 -0.5 2,930,206 - MPMX20_02776 0.39 -1.2 2,930,276 + MPMX20_02776 0.46 -0.5 2,930,284 - MPMX20_02776 0.47 -2.6 2,930,296 + MPMX20_02776 0.48 -0.4 2,930,314 - MPMX20_02776 0.50 +0.1 2,930,332 + MPMX20_02776 0.52 -2.9 2,930,354 + MPMX20_02776 0.54 -1.5 2,930,373 - MPMX20_02776 0.56 -1.5 2,930,653 + MPMX20_02776 0.85 +1.2 2,930,673 - MPMX20_02776 0.87 +0.6 2,930,683 - MPMX20_02776 0.88 -1.3 2,930,745 + -1.7 2,930,745 + -1.1 2,930,753 - -1.3 2,930,775 + -0.1 2,930,783 - +0.4 2,930,815 + -0.1 2,930,815 + -0.1 2,930,823 - -0.7
Or see this region's nucleotide sequence