Experiment: 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01967 and MPMX20_01968 are separated by 125 nucleotides MPMX20_01968 and MPMX20_01969 are separated by 72 nucleotides MPMX20_01969 and MPMX20_01970 are separated by 28 nucleotides
MPMX20_01967: MPMX20_01967 - hypothetical protein, at 2,060,142 to 2,060,282
_01967
MPMX20_01968: MPMX20_01968 - hypothetical protein, at 2,060,408 to 2,061,190
_01968
MPMX20_01969: MPMX20_01969 - Carbonic anhydrase 1, at 2,061,263 to 2,061,898
_01969
MPMX20_01970: MPMX20_01970 - hypothetical protein, at 2,061,927 to 2,063,522
_01970
Position (kb)
2061
2062 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2060.270 kb on - strand at 2060.315 kb on + strand at 2060.315 kb on + strand at 2060.320 kb on + strand at 2060.328 kb on - strand at 2060.345 kb on + strand at 2060.348 kb on - strand at 2060.348 kb on - strand at 2060.355 kb on + strand at 2060.379 kb on + strand at 2060.382 kb on - strand at 2060.394 kb on + strand at 2060.409 kb on + strand at 2060.409 kb on + strand at 2060.409 kb on + strand at 2060.409 kb on + strand at 2060.417 kb on - strand at 2060.417 kb on - strand at 2060.417 kb on - strand at 2060.417 kb on - strand at 2060.417 kb on - strand at 2060.417 kb on - strand at 2060.419 kb on + strand at 2060.419 kb on + strand at 2060.419 kb on + strand at 2060.419 kb on + strand at 2060.419 kb on + strand at 2060.419 kb on + strand at 2060.427 kb on - strand at 2060.427 kb on - strand at 2060.427 kb on - strand at 2060.427 kb on - strand at 2060.427 kb on - strand at 2060.427 kb on - strand at 2060.492 kb on + strand, within MPMX20_01968 at 2060.571 kb on - strand, within MPMX20_01968 at 2060.634 kb on - strand, within MPMX20_01968 at 2060.644 kb on + strand, within MPMX20_01968 at 2060.759 kb on + strand, within MPMX20_01968 at 2060.847 kb on + strand, within MPMX20_01968 at 2060.867 kb on - strand, within MPMX20_01968 at 2060.867 kb on - strand, within MPMX20_01968 at 2060.927 kb on + strand, within MPMX20_01968 at 2060.935 kb on - strand, within MPMX20_01968 at 2060.946 kb on - strand, within MPMX20_01968 at 2060.954 kb on - strand, within MPMX20_01968 at 2060.980 kb on + strand, within MPMX20_01968 at 2061.116 kb on + strand at 2061.207 kb on - strand at 2061.336 kb on + strand, within MPMX20_01969 at 2061.375 kb on - strand, within MPMX20_01969 at 2061.375 kb on - strand, within MPMX20_01969 at 2061.411 kb on + strand, within MPMX20_01969 at 2061.420 kb on + strand, within MPMX20_01969 at 2061.428 kb on - strand, within MPMX20_01969 at 2061.433 kb on - strand, within MPMX20_01969 at 2061.474 kb on + strand, within MPMX20_01969 at 2061.474 kb on + strand, within MPMX20_01969 at 2061.482 kb on - strand, within MPMX20_01969 at 2061.526 kb on + strand, within MPMX20_01969 at 2061.534 kb on - strand, within MPMX20_01969 at 2061.556 kb on + strand, within MPMX20_01969 at 2061.556 kb on + strand, within MPMX20_01969 at 2061.556 kb on + strand, within MPMX20_01969 at 2061.707 kb on - strand, within MPMX20_01969 at 2061.811 kb on + strand, within MPMX20_01969 at 2061.838 kb on + strand at 2061.877 kb on + strand at 2061.901 kb on - strand at 2061.903 kb on + strand at 2061.977 kb on - strand at 2062.012 kb on - strand at 2062.022 kb on + strand at 2062.116 kb on - strand, within MPMX20_01970 at 2062.116 kb on - strand, within MPMX20_01970 at 2062.147 kb on + strand, within MPMX20_01970 at 2062.166 kb on + strand, within MPMX20_01970 at 2062.166 kb on + strand, within MPMX20_01970 at 2062.174 kb on - strand, within MPMX20_01970 at 2062.174 kb on - strand, within MPMX20_01970 at 2062.176 kb on + strand, within MPMX20_01970 at 2062.176 kb on - strand, within MPMX20_01970 at 2062.199 kb on + strand, within MPMX20_01970 at 2062.199 kb on + strand, within MPMX20_01970 at 2062.329 kb on + strand, within MPMX20_01970 at 2062.439 kb on + strand, within MPMX20_01970 at 2062.447 kb on - strand, within MPMX20_01970 at 2062.460 kb on - strand, within MPMX20_01970 at 2062.460 kb on - strand, within MPMX20_01970 at 2062.462 kb on + strand, within MPMX20_01970 at 2062.483 kb on + strand, within MPMX20_01970 at 2062.483 kb on + strand, within MPMX20_01970 at 2062.488 kb on + strand, within MPMX20_01970 at 2062.491 kb on - strand, within MPMX20_01970 at 2062.491 kb on - strand, within MPMX20_01970 at 2062.497 kb on - strand, within MPMX20_01970 at 2062.498 kb on + strand, within MPMX20_01970 at 2062.516 kb on - strand, within MPMX20_01970 at 2062.521 kb on - strand, within MPMX20_01970 at 2062.639 kb on + strand, within MPMX20_01970 at 2062.658 kb on + strand, within MPMX20_01970 at 2062.658 kb on + strand, within MPMX20_01970 at 2062.666 kb on - strand, within MPMX20_01970 at 2062.704 kb on + strand, within MPMX20_01970 at 2062.760 kb on - strand, within MPMX20_01970 at 2062.772 kb on - strand, within MPMX20_01970 at 2062.777 kb on - strand, within MPMX20_01970
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021 remove 2,060,270 - +2.6 2,060,315 + +0.2 2,060,315 + -0.5 2,060,320 + +1.4 2,060,328 - -2.3 2,060,345 + +0.4 2,060,348 - -0.1 2,060,348 - -1.5 2,060,355 + -1.5 2,060,379 + +2.3 2,060,382 - -0.7 2,060,394 + -0.2 2,060,409 + -0.5 2,060,409 + +0.3 2,060,409 + +0.7 2,060,409 + +1.9 2,060,417 - -1.4 2,060,417 - -0.2 2,060,417 - +0.3 2,060,417 - -0.6 2,060,417 - -0.0 2,060,417 - -0.2 2,060,419 + +0.3 2,060,419 + -0.0 2,060,419 + +5.1 2,060,419 + +0.4 2,060,419 + -1.3 2,060,419 + -1.3 2,060,427 - +3.6 2,060,427 - -0.7 2,060,427 - -0.0 2,060,427 - -0.4 2,060,427 - +0.6 2,060,427 - -0.2 2,060,492 + MPMX20_01968 0.11 -0.9 2,060,571 - MPMX20_01968 0.21 -0.4 2,060,634 - MPMX20_01968 0.29 -0.2 2,060,644 + MPMX20_01968 0.30 -0.3 2,060,759 + MPMX20_01968 0.45 -0.0 2,060,847 + MPMX20_01968 0.56 -0.3 2,060,867 - MPMX20_01968 0.59 -0.9 2,060,867 - MPMX20_01968 0.59 -1.3 2,060,927 + MPMX20_01968 0.66 +0.2 2,060,935 - MPMX20_01968 0.67 +0.6 2,060,946 - MPMX20_01968 0.69 +1.0 2,060,954 - MPMX20_01968 0.70 +1.0 2,060,980 + MPMX20_01968 0.73 -0.5 2,061,116 + -0.4 2,061,207 - -2.0 2,061,336 + MPMX20_01969 0.11 +0.5 2,061,375 - MPMX20_01969 0.18 -0.7 2,061,375 - MPMX20_01969 0.18 +0.0 2,061,411 + MPMX20_01969 0.23 -1.1 2,061,420 + MPMX20_01969 0.25 -1.3 2,061,428 - MPMX20_01969 0.26 -1.5 2,061,433 - MPMX20_01969 0.27 +0.0 2,061,474 + MPMX20_01969 0.33 +0.0 2,061,474 + MPMX20_01969 0.33 -2.2 2,061,482 - MPMX20_01969 0.34 -0.3 2,061,526 + MPMX20_01969 0.41 +1.6 2,061,534 - MPMX20_01969 0.43 +0.0 2,061,556 + MPMX20_01969 0.46 +0.3 2,061,556 + MPMX20_01969 0.46 +0.0 2,061,556 + MPMX20_01969 0.46 -1.0 2,061,707 - MPMX20_01969 0.70 +3.3 2,061,811 + MPMX20_01969 0.86 -0.3 2,061,838 + +0.7 2,061,877 + -0.2 2,061,901 - +0.7 2,061,903 + -0.5 2,061,977 - -0.7 2,062,012 - +2.3 2,062,022 + -0.1 2,062,116 - MPMX20_01970 0.12 +2.6 2,062,116 - MPMX20_01970 0.12 +0.3 2,062,147 + MPMX20_01970 0.14 -0.5 2,062,166 + MPMX20_01970 0.15 +1.3 2,062,166 + MPMX20_01970 0.15 +0.8 2,062,174 - MPMX20_01970 0.15 +0.4 2,062,174 - MPMX20_01970 0.15 -0.4 2,062,176 + MPMX20_01970 0.16 -1.3 2,062,176 - MPMX20_01970 0.16 -1.1 2,062,199 + MPMX20_01970 0.17 +0.0 2,062,199 + MPMX20_01970 0.17 +0.1 2,062,329 + MPMX20_01970 0.25 -1.5 2,062,439 + MPMX20_01970 0.32 -1.1 2,062,447 - MPMX20_01970 0.33 +0.8 2,062,460 - MPMX20_01970 0.33 -1.9 2,062,460 - MPMX20_01970 0.33 +0.6 2,062,462 + MPMX20_01970 0.34 -0.6 2,062,483 + MPMX20_01970 0.35 -0.1 2,062,483 + MPMX20_01970 0.35 +0.8 2,062,488 + MPMX20_01970 0.35 +1.2 2,062,491 - MPMX20_01970 0.35 -1.4 2,062,491 - MPMX20_01970 0.35 -1.4 2,062,497 - MPMX20_01970 0.36 -0.9 2,062,498 + MPMX20_01970 0.36 +0.2 2,062,516 - MPMX20_01970 0.37 -0.8 2,062,521 - MPMX20_01970 0.37 +0.8 2,062,639 + MPMX20_01970 0.45 -0.5 2,062,658 + MPMX20_01970 0.46 -0.5 2,062,658 + MPMX20_01970 0.46 +1.3 2,062,666 - MPMX20_01970 0.46 -0.6 2,062,704 + MPMX20_01970 0.49 -0.3 2,062,760 - MPMX20_01970 0.52 -0.6 2,062,772 - MPMX20_01970 0.53 -1.3 2,062,777 - MPMX20_01970 0.53 -0.3
Or see this region's nucleotide sequence