Experiment: 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01605 and MPMX20_01606 are separated by 186 nucleotides MPMX20_01606 and MPMX20_01607 are separated by 69 nucleotides
MPMX20_01605: MPMX20_01605 - Lon protease, at 1,696,857 to 1,698,617
_01605
MPMX20_01606: MPMX20_01606 - Macrodomain Ter protein, at 1,698,804 to 1,699,256
_01606
MPMX20_01607: MPMX20_01607 - Outer membrane protein A, at 1,699,326 to 1,700,381
_01607
Position (kb)
1698
1699
1700 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 1697.936 kb on - strand, within MPMX20_01605 at 1697.936 kb on - strand, within MPMX20_01605 at 1698.045 kb on - strand, within MPMX20_01605 at 1698.161 kb on - strand, within MPMX20_01605 at 1698.164 kb on - strand, within MPMX20_01605 at 1698.180 kb on + strand, within MPMX20_01605 at 1698.193 kb on - strand, within MPMX20_01605 at 1698.430 kb on + strand, within MPMX20_01605 at 1698.430 kb on + strand, within MPMX20_01605 at 1698.438 kb on - strand, within MPMX20_01605 at 1698.455 kb on - strand at 1698.465 kb on + strand at 1698.465 kb on - strand at 1698.466 kb on + strand at 1698.466 kb on + strand at 1698.473 kb on - strand at 1698.474 kb on - strand at 1698.484 kb on - strand at 1698.557 kb on + strand at 1698.557 kb on + strand at 1698.565 kb on - strand at 1698.612 kb on + strand at 1698.620 kb on - strand at 1698.646 kb on - strand at 1698.679 kb on - strand at 1698.703 kb on + strand at 1698.715 kb on - strand at 1698.728 kb on + strand at 1698.767 kb on + strand at 1698.785 kb on - strand at 1698.857 kb on + strand, within MPMX20_01606 at 1698.889 kb on - strand, within MPMX20_01606 at 1698.971 kb on - strand, within MPMX20_01606 at 1698.986 kb on + strand, within MPMX20_01606 at 1698.986 kb on + strand, within MPMX20_01606 at 1698.986 kb on + strand, within MPMX20_01606 at 1698.994 kb on - strand, within MPMX20_01606 at 1698.994 kb on - strand, within MPMX20_01606 at 1698.994 kb on - strand, within MPMX20_01606 at 1699.095 kb on - strand, within MPMX20_01606 at 1699.105 kb on + strand, within MPMX20_01606 at 1699.125 kb on + strand, within MPMX20_01606 at 1699.156 kb on + strand, within MPMX20_01606 at 1699.196 kb on - strand, within MPMX20_01606 at 1699.325 kb on - strand at 1699.412 kb on - strand at 1699.428 kb on - strand at 1699.509 kb on - strand, within MPMX20_01607 at 1699.647 kb on - strand, within MPMX20_01607 at 1699.986 kb on + strand, within MPMX20_01607 at 1700.011 kb on - strand, within MPMX20_01607 at 1700.031 kb on - strand, within MPMX20_01607 at 1700.058 kb on - strand, within MPMX20_01607 at 1700.087 kb on - strand, within MPMX20_01607 at 1700.137 kb on - strand, within MPMX20_01607 at 1700.139 kb on + strand, within MPMX20_01607 at 1700.147 kb on - strand, within MPMX20_01607 at 1700.175 kb on - strand, within MPMX20_01607 at 1700.200 kb on - strand, within MPMX20_01607 at 1700.227 kb on + strand, within MPMX20_01607
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021 remove 1,697,936 - MPMX20_01605 0.61 -0.5 1,697,936 - MPMX20_01605 0.61 +1.0 1,698,045 - MPMX20_01605 0.67 -0.3 1,698,161 - MPMX20_01605 0.74 +1.9 1,698,164 - MPMX20_01605 0.74 -0.7 1,698,180 + MPMX20_01605 0.75 -1.6 1,698,193 - MPMX20_01605 0.76 -1.2 1,698,430 + MPMX20_01605 0.89 -0.4 1,698,430 + MPMX20_01605 0.89 -0.7 1,698,438 - MPMX20_01605 0.90 -0.6 1,698,455 - +0.5 1,698,465 + -1.2 1,698,465 - -0.5 1,698,466 + -1.4 1,698,466 + -0.8 1,698,473 - -1.2 1,698,474 - -0.6 1,698,484 - +0.2 1,698,557 + -0.7 1,698,557 + -1.0 1,698,565 - +0.6 1,698,612 + -1.2 1,698,620 - -0.4 1,698,646 - +0.1 1,698,679 - -0.3 1,698,703 + -0.8 1,698,715 - -2.0 1,698,728 + -0.4 1,698,767 + -1.9 1,698,785 - -1.0 1,698,857 + MPMX20_01606 0.12 +0.5 1,698,889 - MPMX20_01606 0.19 -1.6 1,698,971 - MPMX20_01606 0.37 +2.2 1,698,986 + MPMX20_01606 0.40 -1.4 1,698,986 + MPMX20_01606 0.40 -1.5 1,698,986 + MPMX20_01606 0.40 -1.8 1,698,994 - MPMX20_01606 0.42 -1.6 1,698,994 - MPMX20_01606 0.42 -0.0 1,698,994 - MPMX20_01606 0.42 -2.5 1,699,095 - MPMX20_01606 0.64 -1.7 1,699,105 + MPMX20_01606 0.66 -0.6 1,699,125 + MPMX20_01606 0.71 +0.5 1,699,156 + MPMX20_01606 0.78 -0.8 1,699,196 - MPMX20_01606 0.87 +0.6 1,699,325 - +0.5 1,699,412 - -2.0 1,699,428 - -2.3 1,699,509 - MPMX20_01607 0.17 -2.2 1,699,647 - MPMX20_01607 0.30 -1.4 1,699,986 + MPMX20_01607 0.62 +0.2 1,700,011 - MPMX20_01607 0.65 -2.1 1,700,031 - MPMX20_01607 0.67 +6.6 1,700,058 - MPMX20_01607 0.69 -1.4 1,700,087 - MPMX20_01607 0.72 -1.8 1,700,137 - MPMX20_01607 0.77 -3.3 1,700,139 + MPMX20_01607 0.77 +0.2 1,700,147 - MPMX20_01607 0.78 -0.4 1,700,175 - MPMX20_01607 0.80 -0.1 1,700,200 - MPMX20_01607 0.83 -1.7 1,700,227 + MPMX20_01607 0.85 -2.0
Or see this region's nucleotide sequence