Experiment: 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01387 and MPMX20_01388 are separated by 67 nucleotides MPMX20_01388 and MPMX20_01389 are separated by 127 nucleotides MPMX20_01389 and MPMX20_01390 are separated by 180 nucleotides MPMX20_01390 and MPMX20_01391 overlap by 1 nucleotides
MPMX20_01387: MPMX20_01387 - ABC transporter ATP-binding protein ModF, at 1,449,552 to 1,451,024
_01387
MPMX20_01388: MPMX20_01388 - DNA-binding transcriptional dual regulator ModE, at 1,451,092 to 1,451,880
_01388
MPMX20_01389: MPMX20_01389 - Multidrug efflux pump accessory protein AcrZ, at 1,452,008 to 1,452,157
_01389
MPMX20_01390: MPMX20_01390 - Molybdate-binding protein ModA, at 1,452,338 to 1,453,111
_01390
MPMX20_01391: MPMX20_01391 - Molybdenum transport system permease protein ModB, at 1,453,111 to 1,453,800
_01391
Position (kb)
1452
1453 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1451.068 kb on - strand at 1451.090 kb on + strand at 1451.093 kb on + strand at 1451.181 kb on - strand, within MPMX20_01388 at 1451.184 kb on + strand, within MPMX20_01388 at 1451.186 kb on - strand, within MPMX20_01388 at 1451.196 kb on + strand, within MPMX20_01388 at 1451.196 kb on + strand, within MPMX20_01388 at 1451.204 kb on - strand, within MPMX20_01388 at 1451.204 kb on - strand, within MPMX20_01388 at 1451.204 kb on - strand, within MPMX20_01388 at 1451.204 kb on - strand, within MPMX20_01388 at 1451.204 kb on - strand, within MPMX20_01388 at 1451.218 kb on + strand, within MPMX20_01388 at 1451.223 kb on + strand, within MPMX20_01388 at 1451.235 kb on + strand, within MPMX20_01388 at 1451.243 kb on - strand, within MPMX20_01388 at 1451.243 kb on - strand, within MPMX20_01388 at 1451.243 kb on - strand, within MPMX20_01388 at 1451.243 kb on - strand, within MPMX20_01388 at 1451.315 kb on + strand, within MPMX20_01388 at 1451.357 kb on + strand, within MPMX20_01388 at 1451.459 kb on - strand, within MPMX20_01388 at 1451.620 kb on - strand, within MPMX20_01388 at 1451.639 kb on - strand, within MPMX20_01388 at 1451.649 kb on + strand, within MPMX20_01388 at 1451.703 kb on + strand, within MPMX20_01388 at 1451.703 kb on + strand, within MPMX20_01388 at 1451.761 kb on + strand, within MPMX20_01388 at 1451.761 kb on + strand, within MPMX20_01388 at 1451.839 kb on - strand at 1451.850 kb on + strand at 1451.850 kb on + strand at 1451.850 kb on + strand at 1451.877 kb on + strand at 1451.877 kb on + strand at 1451.877 kb on + strand at 1451.877 kb on + strand at 1451.885 kb on - strand at 1451.885 kb on - strand at 1451.885 kb on - strand at 1451.885 kb on - strand at 1451.885 kb on - strand at 1451.885 kb on - strand at 1451.885 kb on - strand at 1451.885 kb on - strand at 1451.885 kb on - strand at 1451.918 kb on + strand at 1451.933 kb on + strand at 1451.976 kb on + strand at 1451.976 kb on + strand at 1451.984 kb on - strand at 1451.984 kb on - strand at 1452.054 kb on + strand, within MPMX20_01389 at 1452.066 kb on + strand, within MPMX20_01389 at 1452.066 kb on + strand, within MPMX20_01389 at 1452.134 kb on + strand, within MPMX20_01389 at 1452.142 kb on - strand, within MPMX20_01389 at 1452.142 kb on - strand, within MPMX20_01389 at 1452.172 kb on + strand at 1452.244 kb on + strand at 1452.244 kb on + strand at 1452.244 kb on + strand at 1452.244 kb on + strand at 1452.274 kb on - strand at 1452.345 kb on + strand at 1452.353 kb on - strand at 1452.353 kb on - strand at 1452.353 kb on - strand at 1452.383 kb on + strand at 1452.409 kb on - strand at 1452.409 kb on - strand at 1452.414 kb on - strand at 1452.414 kb on - strand at 1452.458 kb on + strand, within MPMX20_01390 at 1452.463 kb on + strand, within MPMX20_01390 at 1452.488 kb on - strand, within MPMX20_01390 at 1452.503 kb on - strand, within MPMX20_01390 at 1452.579 kb on - strand, within MPMX20_01390 at 1452.584 kb on + strand, within MPMX20_01390 at 1452.722 kb on + strand, within MPMX20_01390 at 1452.730 kb on - strand, within MPMX20_01390 at 1452.765 kb on + strand, within MPMX20_01390 at 1452.787 kb on + strand, within MPMX20_01390 at 1452.787 kb on + strand, within MPMX20_01390 at 1452.795 kb on - strand, within MPMX20_01390 at 1452.831 kb on + strand, within MPMX20_01390 at 1452.851 kb on - strand, within MPMX20_01390 at 1452.872 kb on + strand, within MPMX20_01390 at 1452.891 kb on - strand, within MPMX20_01390 at 1452.946 kb on + strand, within MPMX20_01390 at 1452.989 kb on + strand, within MPMX20_01390 at 1453.054 kb on + strand at 1453.055 kb on - strand at 1453.062 kb on - strand at 1453.070 kb on - strand at 1453.089 kb on - strand at 1453.141 kb on + strand at 1453.141 kb on + strand at 1453.141 kb on + strand at 1453.141 kb on + strand at 1453.141 kb on + strand at 1453.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021 remove 1,451,068 - +1.3 1,451,090 + +0.7 1,451,093 + -0.9 1,451,181 - MPMX20_01388 0.11 -0.9 1,451,184 + MPMX20_01388 0.12 -0.4 1,451,186 - MPMX20_01388 0.12 +0.3 1,451,196 + MPMX20_01388 0.13 -0.4 1,451,196 + MPMX20_01388 0.13 -1.3 1,451,204 - MPMX20_01388 0.14 +2.3 1,451,204 - MPMX20_01388 0.14 +0.6 1,451,204 - MPMX20_01388 0.14 -0.0 1,451,204 - MPMX20_01388 0.14 +0.4 1,451,204 - MPMX20_01388 0.14 -0.3 1,451,218 + MPMX20_01388 0.16 -0.2 1,451,223 + MPMX20_01388 0.17 -0.1 1,451,235 + MPMX20_01388 0.18 -1.0 1,451,243 - MPMX20_01388 0.19 -0.0 1,451,243 - MPMX20_01388 0.19 -0.4 1,451,243 - MPMX20_01388 0.19 -3.4 1,451,243 - MPMX20_01388 0.19 -0.5 1,451,315 + MPMX20_01388 0.28 +1.3 1,451,357 + MPMX20_01388 0.34 +1.3 1,451,459 - MPMX20_01388 0.47 +1.7 1,451,620 - MPMX20_01388 0.67 +1.0 1,451,639 - MPMX20_01388 0.69 -0.2 1,451,649 + MPMX20_01388 0.71 +0.7 1,451,703 + MPMX20_01388 0.77 -0.2 1,451,703 + MPMX20_01388 0.77 -2.1 1,451,761 + MPMX20_01388 0.85 -0.5 1,451,761 + MPMX20_01388 0.85 -0.9 1,451,839 - +1.6 1,451,850 + +0.5 1,451,850 + -0.3 1,451,850 + +0.5 1,451,877 + +0.4 1,451,877 + +1.5 1,451,877 + +3.8 1,451,877 + -0.8 1,451,885 - -1.5 1,451,885 - -0.2 1,451,885 - +0.2 1,451,885 - +0.1 1,451,885 - -0.7 1,451,885 - -0.2 1,451,885 - -0.7 1,451,885 - -0.2 1,451,885 - +0.0 1,451,918 + +1.0 1,451,933 + -0.3 1,451,976 + +0.7 1,451,976 + -1.9 1,451,984 - -0.2 1,451,984 - +1.0 1,452,054 + MPMX20_01389 0.31 -0.2 1,452,066 + MPMX20_01389 0.39 +0.2 1,452,066 + MPMX20_01389 0.39 +0.1 1,452,134 + MPMX20_01389 0.84 -0.3 1,452,142 - MPMX20_01389 0.89 -1.8 1,452,142 - MPMX20_01389 0.89 +1.1 1,452,172 + +2.3 1,452,244 + +0.3 1,452,244 + +0.8 1,452,244 + -0.7 1,452,244 + -0.9 1,452,274 - +0.8 1,452,345 + -1.8 1,452,353 - -1.8 1,452,353 - -0.1 1,452,353 - -0.6 1,452,383 + +0.2 1,452,409 - +0.3 1,452,409 - -0.8 1,452,414 - -0.5 1,452,414 - +1.7 1,452,458 + MPMX20_01390 0.16 -1.0 1,452,463 + MPMX20_01390 0.16 -0.7 1,452,488 - MPMX20_01390 0.19 +0.5 1,452,503 - MPMX20_01390 0.21 -1.2 1,452,579 - MPMX20_01390 0.31 +0.2 1,452,584 + MPMX20_01390 0.32 +0.3 1,452,722 + MPMX20_01390 0.50 +0.5 1,452,730 - MPMX20_01390 0.51 -0.1 1,452,765 + MPMX20_01390 0.55 +0.6 1,452,787 + MPMX20_01390 0.58 -0.0 1,452,787 + MPMX20_01390 0.58 +0.0 1,452,795 - MPMX20_01390 0.59 -0.7 1,452,831 + MPMX20_01390 0.64 -0.3 1,452,851 - MPMX20_01390 0.66 -0.2 1,452,872 + MPMX20_01390 0.69 -1.4 1,452,891 - MPMX20_01390 0.71 +0.6 1,452,946 + MPMX20_01390 0.79 -1.4 1,452,989 + MPMX20_01390 0.84 -0.3 1,453,054 + -0.8 1,453,055 - +0.3 1,453,062 - +2.3 1,453,070 - +2.3 1,453,089 - -0.7 1,453,141 + +0.5 1,453,141 + +0.5 1,453,141 + -1.7 1,453,141 + -1.3 1,453,141 + +0.3 1,453,149 - -0.7
Or see this region's nucleotide sequence