Experiment: 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01300 and MPMX20_01301 are separated by 211 nucleotides MPMX20_01301 and MPMX20_01302 are separated by 79 nucleotides MPMX20_01302 and MPMX20_01303 are separated by 120 nucleotides MPMX20_01303 and MPMX20_01304 overlap by 1 nucleotides
MPMX20_01300: MPMX20_01300 - Leucine--tRNA ligase, at 1,360,192 to 1,362,774
_01300
MPMX20_01301: MPMX20_01301 - hypothetical protein, at 1,362,986 to 1,363,471
_01301
MPMX20_01302: MPMX20_01302 - Pyrimidine-specific ribonucleoside hydrolase RihA, at 1,363,551 to 1,364,495
_01302
MPMX20_01303: MPMX20_01303 - Glutamine transport ATP-binding protein GlnQ, at 1,364,616 to 1,365,341
_01303
MPMX20_01304: MPMX20_01304 - Glutamate/aspartate import permease protein GltK, at 1,365,341 to 1,366,015
_01304
Position (kb)
1363
1364
1365 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1362.859 kb on - strand at 1362.918 kb on - strand at 1362.918 kb on - strand at 1362.918 kb on - strand at 1363.019 kb on + strand at 1363.021 kb on + strand at 1363.053 kb on - strand, within MPMX20_01301 at 1363.083 kb on - strand, within MPMX20_01301 at 1363.169 kb on - strand, within MPMX20_01301 at 1363.190 kb on - strand, within MPMX20_01301 at 1363.205 kb on + strand, within MPMX20_01301 at 1363.243 kb on + strand, within MPMX20_01301 at 1363.251 kb on - strand, within MPMX20_01301 at 1363.317 kb on + strand, within MPMX20_01301 at 1363.331 kb on - strand, within MPMX20_01301 at 1363.354 kb on + strand, within MPMX20_01301 at 1363.440 kb on + strand at 1363.478 kb on - strand at 1363.482 kb on + strand at 1363.495 kb on + strand at 1363.495 kb on + strand at 1363.526 kb on + strand at 1363.570 kb on - strand at 1363.572 kb on - strand at 1363.633 kb on + strand at 1363.633 kb on + strand at 1363.633 kb on + strand at 1363.641 kb on - strand at 1363.641 kb on - strand at 1363.655 kb on + strand, within MPMX20_01302 at 1363.665 kb on + strand, within MPMX20_01302 at 1363.675 kb on + strand, within MPMX20_01302 at 1363.675 kb on + strand, within MPMX20_01302 at 1363.675 kb on + strand, within MPMX20_01302 at 1363.683 kb on - strand, within MPMX20_01302 at 1363.683 kb on - strand, within MPMX20_01302 at 1363.719 kb on + strand, within MPMX20_01302 at 1363.727 kb on - strand, within MPMX20_01302 at 1363.752 kb on - strand, within MPMX20_01302 at 1363.776 kb on + strand, within MPMX20_01302 at 1363.789 kb on - strand, within MPMX20_01302 at 1363.811 kb on - strand, within MPMX20_01302 at 1363.933 kb on - strand, within MPMX20_01302 at 1364.152 kb on - strand, within MPMX20_01302 at 1364.188 kb on + strand, within MPMX20_01302 at 1364.196 kb on - strand, within MPMX20_01302 at 1364.222 kb on + strand, within MPMX20_01302 at 1364.222 kb on + strand, within MPMX20_01302 at 1364.230 kb on - strand, within MPMX20_01302 at 1364.232 kb on + strand, within MPMX20_01302 at 1364.296 kb on - strand, within MPMX20_01302 at 1364.312 kb on + strand, within MPMX20_01302 at 1364.312 kb on + strand, within MPMX20_01302 at 1364.337 kb on - strand, within MPMX20_01302 at 1364.341 kb on - strand, within MPMX20_01302 at 1364.358 kb on - strand, within MPMX20_01302 at 1364.358 kb on - strand, within MPMX20_01302 at 1364.409 kb on - strand at 1364.414 kb on + strand at 1364.414 kb on + strand at 1364.429 kb on + strand at 1364.435 kb on + strand at 1364.484 kb on + strand at 1364.487 kb on - strand at 1364.488 kb on - strand at 1364.499 kb on - strand at 1364.617 kb on - strand at 1364.617 kb on - strand at 1364.632 kb on - strand at 1364.860 kb on + strand, within MPMX20_01303 at 1364.879 kb on + strand, within MPMX20_01303 at 1364.881 kb on + strand, within MPMX20_01303 at 1364.881 kb on + strand, within MPMX20_01303 at 1364.887 kb on - strand, within MPMX20_01303 at 1365.029 kb on + strand, within MPMX20_01303 at 1365.044 kb on + strand, within MPMX20_01303 at 1365.196 kb on - strand, within MPMX20_01303 at 1365.205 kb on + strand, within MPMX20_01303 at 1365.382 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021 remove 1,362,859 - +0.2 1,362,918 - +1.7 1,362,918 - -0.9 1,362,918 - +0.4 1,363,019 + -1.0 1,363,021 + -0.3 1,363,053 - MPMX20_01301 0.14 +0.6 1,363,083 - MPMX20_01301 0.20 -0.6 1,363,169 - MPMX20_01301 0.38 +1.4 1,363,190 - MPMX20_01301 0.42 -0.1 1,363,205 + MPMX20_01301 0.45 +0.7 1,363,243 + MPMX20_01301 0.53 +0.1 1,363,251 - MPMX20_01301 0.55 -0.2 1,363,317 + MPMX20_01301 0.68 -0.0 1,363,331 - MPMX20_01301 0.71 +3.4 1,363,354 + MPMX20_01301 0.76 +0.4 1,363,440 + -1.9 1,363,478 - -0.9 1,363,482 + +0.7 1,363,495 + +0.3 1,363,495 + +0.3 1,363,526 + +0.3 1,363,570 - -0.0 1,363,572 - +0.4 1,363,633 + -0.2 1,363,633 + -0.8 1,363,633 + -0.1 1,363,641 - +1.8 1,363,641 - +2.0 1,363,655 + MPMX20_01302 0.11 -1.0 1,363,665 + MPMX20_01302 0.12 -0.3 1,363,675 + MPMX20_01302 0.13 +1.2 1,363,675 + MPMX20_01302 0.13 -2.3 1,363,675 + MPMX20_01302 0.13 -1.4 1,363,683 - MPMX20_01302 0.14 +0.1 1,363,683 - MPMX20_01302 0.14 +0.0 1,363,719 + MPMX20_01302 0.18 -0.6 1,363,727 - MPMX20_01302 0.19 -2.0 1,363,752 - MPMX20_01302 0.21 -0.5 1,363,776 + MPMX20_01302 0.24 +3.0 1,363,789 - MPMX20_01302 0.25 +0.2 1,363,811 - MPMX20_01302 0.28 -1.1 1,363,933 - MPMX20_01302 0.40 -1.3 1,364,152 - MPMX20_01302 0.64 -0.2 1,364,188 + MPMX20_01302 0.67 -0.3 1,364,196 - MPMX20_01302 0.68 -0.3 1,364,222 + MPMX20_01302 0.71 -0.2 1,364,222 + MPMX20_01302 0.71 -0.1 1,364,230 - MPMX20_01302 0.72 -0.1 1,364,232 + MPMX20_01302 0.72 +0.4 1,364,296 - MPMX20_01302 0.79 -0.8 1,364,312 + MPMX20_01302 0.81 -0.6 1,364,312 + MPMX20_01302 0.81 +0.4 1,364,337 - MPMX20_01302 0.83 -0.2 1,364,341 - MPMX20_01302 0.84 +1.2 1,364,358 - MPMX20_01302 0.85 -0.1 1,364,358 - MPMX20_01302 0.85 +0.1 1,364,409 - +0.9 1,364,414 + -1.3 1,364,414 + -1.0 1,364,429 + -0.4 1,364,435 + +2.2 1,364,484 + -1.9 1,364,487 - -0.8 1,364,488 - -0.7 1,364,499 - -1.3 1,364,617 - +0.6 1,364,617 - +0.7 1,364,632 - +1.0 1,364,860 + MPMX20_01303 0.34 +2.2 1,364,879 + MPMX20_01303 0.36 -1.1 1,364,881 + MPMX20_01303 0.37 +0.2 1,364,881 + MPMX20_01303 0.37 +0.9 1,364,887 - MPMX20_01303 0.37 +0.8 1,365,029 + MPMX20_01303 0.57 -1.4 1,365,044 + MPMX20_01303 0.59 +0.9 1,365,196 - MPMX20_01303 0.80 +1.9 1,365,205 + MPMX20_01303 0.81 +2.2 1,365,382 + +0.3
Or see this region's nucleotide sequence