Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01302

Experiment: 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01300 and MPMX20_01301 are separated by 211 nucleotidesMPMX20_01301 and MPMX20_01302 are separated by 79 nucleotidesMPMX20_01302 and MPMX20_01303 are separated by 120 nucleotidesMPMX20_01303 and MPMX20_01304 overlap by 1 nucleotides MPMX20_01300: MPMX20_01300 - Leucine--tRNA ligase, at 1,360,192 to 1,362,774 _01300 MPMX20_01301: MPMX20_01301 - hypothetical protein, at 1,362,986 to 1,363,471 _01301 MPMX20_01302: MPMX20_01302 - Pyrimidine-specific ribonucleoside hydrolase RihA, at 1,363,551 to 1,364,495 _01302 MPMX20_01303: MPMX20_01303 - Glutamine transport ATP-binding protein GlnQ, at 1,364,616 to 1,365,341 _01303 MPMX20_01304: MPMX20_01304 - Glutamate/aspartate import permease protein GltK, at 1,365,341 to 1,366,015 _01304 Position (kb) 1363 1364 1365Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1362.859 kb on - strandat 1362.918 kb on - strandat 1362.918 kb on - strandat 1362.918 kb on - strandat 1363.019 kb on + strandat 1363.021 kb on + strandat 1363.053 kb on - strand, within MPMX20_01301at 1363.083 kb on - strand, within MPMX20_01301at 1363.169 kb on - strand, within MPMX20_01301at 1363.190 kb on - strand, within MPMX20_01301at 1363.205 kb on + strand, within MPMX20_01301at 1363.243 kb on + strand, within MPMX20_01301at 1363.251 kb on - strand, within MPMX20_01301at 1363.317 kb on + strand, within MPMX20_01301at 1363.331 kb on - strand, within MPMX20_01301at 1363.354 kb on + strand, within MPMX20_01301at 1363.440 kb on + strandat 1363.478 kb on - strandat 1363.482 kb on + strandat 1363.495 kb on + strandat 1363.495 kb on + strandat 1363.526 kb on + strandat 1363.570 kb on - strandat 1363.572 kb on - strandat 1363.633 kb on + strandat 1363.633 kb on + strandat 1363.633 kb on + strandat 1363.641 kb on - strandat 1363.641 kb on - strandat 1363.655 kb on + strand, within MPMX20_01302at 1363.665 kb on + strand, within MPMX20_01302at 1363.675 kb on + strand, within MPMX20_01302at 1363.675 kb on + strand, within MPMX20_01302at 1363.675 kb on + strand, within MPMX20_01302at 1363.683 kb on - strand, within MPMX20_01302at 1363.683 kb on - strand, within MPMX20_01302at 1363.719 kb on + strand, within MPMX20_01302at 1363.727 kb on - strand, within MPMX20_01302at 1363.752 kb on - strand, within MPMX20_01302at 1363.776 kb on + strand, within MPMX20_01302at 1363.789 kb on - strand, within MPMX20_01302at 1363.811 kb on - strand, within MPMX20_01302at 1363.933 kb on - strand, within MPMX20_01302at 1364.152 kb on - strand, within MPMX20_01302at 1364.188 kb on + strand, within MPMX20_01302at 1364.196 kb on - strand, within MPMX20_01302at 1364.222 kb on + strand, within MPMX20_01302at 1364.222 kb on + strand, within MPMX20_01302at 1364.230 kb on - strand, within MPMX20_01302at 1364.232 kb on + strand, within MPMX20_01302at 1364.296 kb on - strand, within MPMX20_01302at 1364.312 kb on + strand, within MPMX20_01302at 1364.312 kb on + strand, within MPMX20_01302at 1364.337 kb on - strand, within MPMX20_01302at 1364.341 kb on - strand, within MPMX20_01302at 1364.358 kb on - strand, within MPMX20_01302at 1364.358 kb on - strand, within MPMX20_01302at 1364.409 kb on - strandat 1364.414 kb on + strandat 1364.414 kb on + strandat 1364.429 kb on + strandat 1364.435 kb on + strandat 1364.484 kb on + strandat 1364.487 kb on - strandat 1364.488 kb on - strandat 1364.499 kb on - strandat 1364.617 kb on - strandat 1364.617 kb on - strandat 1364.632 kb on - strandat 1364.860 kb on + strand, within MPMX20_01303at 1364.879 kb on + strand, within MPMX20_01303at 1364.881 kb on + strand, within MPMX20_01303at 1364.881 kb on + strand, within MPMX20_01303at 1364.887 kb on - strand, within MPMX20_01303at 1365.029 kb on + strand, within MPMX20_01303at 1365.044 kb on + strand, within MPMX20_01303at 1365.196 kb on - strand, within MPMX20_01303at 1365.205 kb on + strand, within MPMX20_01303at 1365.382 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021
remove
1,362,859 - +0.2
1,362,918 - +1.7
1,362,918 - -0.9
1,362,918 - +0.4
1,363,019 + -1.0
1,363,021 + -0.3
1,363,053 - MPMX20_01301 0.14 +0.6
1,363,083 - MPMX20_01301 0.20 -0.6
1,363,169 - MPMX20_01301 0.38 +1.4
1,363,190 - MPMX20_01301 0.42 -0.1
1,363,205 + MPMX20_01301 0.45 +0.7
1,363,243 + MPMX20_01301 0.53 +0.1
1,363,251 - MPMX20_01301 0.55 -0.2
1,363,317 + MPMX20_01301 0.68 -0.0
1,363,331 - MPMX20_01301 0.71 +3.4
1,363,354 + MPMX20_01301 0.76 +0.4
1,363,440 + -1.9
1,363,478 - -0.9
1,363,482 + +0.7
1,363,495 + +0.3
1,363,495 + +0.3
1,363,526 + +0.3
1,363,570 - -0.0
1,363,572 - +0.4
1,363,633 + -0.2
1,363,633 + -0.8
1,363,633 + -0.1
1,363,641 - +1.8
1,363,641 - +2.0
1,363,655 + MPMX20_01302 0.11 -1.0
1,363,665 + MPMX20_01302 0.12 -0.3
1,363,675 + MPMX20_01302 0.13 +1.2
1,363,675 + MPMX20_01302 0.13 -2.3
1,363,675 + MPMX20_01302 0.13 -1.4
1,363,683 - MPMX20_01302 0.14 +0.1
1,363,683 - MPMX20_01302 0.14 +0.0
1,363,719 + MPMX20_01302 0.18 -0.6
1,363,727 - MPMX20_01302 0.19 -2.0
1,363,752 - MPMX20_01302 0.21 -0.5
1,363,776 + MPMX20_01302 0.24 +3.0
1,363,789 - MPMX20_01302 0.25 +0.2
1,363,811 - MPMX20_01302 0.28 -1.1
1,363,933 - MPMX20_01302 0.40 -1.3
1,364,152 - MPMX20_01302 0.64 -0.2
1,364,188 + MPMX20_01302 0.67 -0.3
1,364,196 - MPMX20_01302 0.68 -0.3
1,364,222 + MPMX20_01302 0.71 -0.2
1,364,222 + MPMX20_01302 0.71 -0.1
1,364,230 - MPMX20_01302 0.72 -0.1
1,364,232 + MPMX20_01302 0.72 +0.4
1,364,296 - MPMX20_01302 0.79 -0.8
1,364,312 + MPMX20_01302 0.81 -0.6
1,364,312 + MPMX20_01302 0.81 +0.4
1,364,337 - MPMX20_01302 0.83 -0.2
1,364,341 - MPMX20_01302 0.84 +1.2
1,364,358 - MPMX20_01302 0.85 -0.1
1,364,358 - MPMX20_01302 0.85 +0.1
1,364,409 - +0.9
1,364,414 + -1.3
1,364,414 + -1.0
1,364,429 + -0.4
1,364,435 + +2.2
1,364,484 + -1.9
1,364,487 - -0.8
1,364,488 - -0.7
1,364,499 - -1.3
1,364,617 - +0.6
1,364,617 - +0.7
1,364,632 - +1.0
1,364,860 + MPMX20_01303 0.34 +2.2
1,364,879 + MPMX20_01303 0.36 -1.1
1,364,881 + MPMX20_01303 0.37 +0.2
1,364,881 + MPMX20_01303 0.37 +0.9
1,364,887 - MPMX20_01303 0.37 +0.8
1,365,029 + MPMX20_01303 0.57 -1.4
1,365,044 + MPMX20_01303 0.59 +0.9
1,365,196 - MPMX20_01303 0.80 +1.9
1,365,205 + MPMX20_01303 0.81 +2.2
1,365,382 + +0.3

Or see this region's nucleotide sequence