Experiment: 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01043 and MPMX20_01044 are separated by 75 nucleotides MPMX20_01044 and MPMX20_01045 are separated by 203 nucleotides MPMX20_01045 and MPMX20_01046 are separated by 30 nucleotides
MPMX20_01043: MPMX20_01043 - Ammonia channel, at 1,099,271 to 1,100,557
_01043
MPMX20_01044: MPMX20_01044 - Acyl-CoA thioesterase 2, at 1,100,633 to 1,101,493
_01044
MPMX20_01045: MPMX20_01045 - putative lipoprotein YbaY, at 1,101,697 to 1,102,224
_01045
MPMX20_01046: MPMX20_01046 - DNA base-flipping protein, at 1,102,255 to 1,102,566
_01046
Position (kb)
1100
1101
1102 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1099.723 kb on - strand, within MPMX20_01043 at 1099.725 kb on + strand, within MPMX20_01043 at 1099.743 kb on - strand, within MPMX20_01043 at 1099.743 kb on - strand, within MPMX20_01043 at 1099.743 kb on - strand, within MPMX20_01043 at 1099.760 kb on - strand, within MPMX20_01043 at 1099.774 kb on + strand, within MPMX20_01043 at 1099.816 kb on - strand, within MPMX20_01043 at 1099.835 kb on + strand, within MPMX20_01043 at 1099.838 kb on - strand, within MPMX20_01043 at 1099.848 kb on - strand, within MPMX20_01043 at 1099.869 kb on + strand, within MPMX20_01043 at 1099.877 kb on - strand, within MPMX20_01043 at 1099.877 kb on - strand, within MPMX20_01043 at 1099.903 kb on - strand, within MPMX20_01043 at 1099.927 kb on - strand, within MPMX20_01043 at 1099.937 kb on + strand, within MPMX20_01043 at 1099.962 kb on + strand, within MPMX20_01043 at 1100.018 kb on + strand, within MPMX20_01043 at 1100.023 kb on + strand, within MPMX20_01043 at 1100.026 kb on - strand, within MPMX20_01043 at 1100.044 kb on + strand, within MPMX20_01043 at 1100.047 kb on - strand, within MPMX20_01043 at 1100.054 kb on + strand, within MPMX20_01043 at 1100.075 kb on - strand, within MPMX20_01043 at 1100.095 kb on + strand, within MPMX20_01043 at 1100.095 kb on + strand, within MPMX20_01043 at 1100.101 kb on + strand, within MPMX20_01043 at 1100.103 kb on - strand, within MPMX20_01043 at 1100.121 kb on + strand, within MPMX20_01043 at 1100.151 kb on - strand, within MPMX20_01043 at 1100.154 kb on + strand, within MPMX20_01043 at 1100.252 kb on - strand, within MPMX20_01043 at 1100.252 kb on - strand, within MPMX20_01043 at 1100.259 kb on + strand, within MPMX20_01043 at 1100.351 kb on + strand, within MPMX20_01043 at 1100.409 kb on - strand, within MPMX20_01043 at 1100.454 kb on + strand at 1100.521 kb on - strand at 1100.521 kb on - strand at 1100.580 kb on - strand at 1100.580 kb on - strand at 1100.615 kb on - strand at 1100.625 kb on + strand at 1100.633 kb on - strand at 1100.633 kb on - strand at 1100.655 kb on - strand at 1100.657 kb on + strand at 1100.694 kb on + strand at 1100.694 kb on + strand at 1100.694 kb on + strand at 1100.702 kb on - strand at 1100.744 kb on - strand, within MPMX20_01044 at 1100.759 kb on - strand, within MPMX20_01044 at 1100.759 kb on - strand, within MPMX20_01044 at 1100.759 kb on - strand, within MPMX20_01044 at 1100.775 kb on - strand, within MPMX20_01044 at 1100.784 kb on + strand, within MPMX20_01044 at 1100.847 kb on + strand, within MPMX20_01044 at 1100.999 kb on + strand, within MPMX20_01044 at 1101.046 kb on + strand, within MPMX20_01044 at 1101.053 kb on - strand, within MPMX20_01044 at 1101.119 kb on - strand, within MPMX20_01044 at 1101.202 kb on - strand, within MPMX20_01044 at 1101.214 kb on + strand, within MPMX20_01044 at 1101.229 kb on + strand, within MPMX20_01044 at 1101.237 kb on - strand, within MPMX20_01044 at 1101.262 kb on + strand, within MPMX20_01044 at 1101.347 kb on + strand, within MPMX20_01044 at 1101.357 kb on - strand, within MPMX20_01044 at 1101.405 kb on - strand, within MPMX20_01044 at 1101.423 kb on + strand at 1101.481 kb on + strand at 1101.481 kb on + strand at 1101.481 kb on + strand at 1101.481 kb on + strand at 1101.501 kb on - strand at 1101.529 kb on - strand at 1101.531 kb on + strand at 1101.533 kb on + strand at 1101.611 kb on - strand at 1101.722 kb on - strand at 1101.750 kb on - strand, within MPMX20_01045 at 1101.752 kb on + strand, within MPMX20_01045 at 1101.760 kb on - strand, within MPMX20_01045 at 1101.809 kb on - strand, within MPMX20_01045 at 1101.832 kb on - strand, within MPMX20_01045 at 1101.842 kb on - strand, within MPMX20_01045 at 1101.861 kb on - strand, within MPMX20_01045 at 1101.899 kb on + strand, within MPMX20_01045 at 1101.907 kb on - strand, within MPMX20_01045 at 1101.907 kb on - strand, within MPMX20_01045 at 1101.952 kb on - strand, within MPMX20_01045 at 1101.961 kb on - strand, within MPMX20_01045 at 1101.985 kb on + strand, within MPMX20_01045 at 1101.993 kb on - strand, within MPMX20_01045 at 1101.993 kb on - strand, within MPMX20_01045 at 1101.993 kb on - strand, within MPMX20_01045 at 1102.005 kb on + strand, within MPMX20_01045 at 1102.034 kb on - strand, within MPMX20_01045 at 1102.041 kb on - strand, within MPMX20_01045 at 1102.042 kb on - strand, within MPMX20_01045 at 1102.208 kb on + strand at 1102.218 kb on + strand at 1102.221 kb on - strand at 1102.227 kb on - strand at 1102.233 kb on + strand at 1102.235 kb on - strand at 1102.235 kb on - strand at 1102.251 kb on + strand at 1102.261 kb on - strand at 1102.261 kb on - strand at 1102.261 kb on - strand at 1102.303 kb on + strand, within MPMX20_01046 at 1102.319 kb on - strand, within MPMX20_01046 at 1102.321 kb on - strand, within MPMX20_01046 at 1102.355 kb on - strand, within MPMX20_01046 at 1102.394 kb on + strand, within MPMX20_01046 at 1102.397 kb on - strand, within MPMX20_01046 at 1102.423 kb on + strand, within MPMX20_01046 at 1102.444 kb on - strand, within MPMX20_01046
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_021 remove 1,099,723 - MPMX20_01043 0.35 -0.8 1,099,725 + MPMX20_01043 0.35 -0.1 1,099,743 - MPMX20_01043 0.37 +0.3 1,099,743 - MPMX20_01043 0.37 -0.5 1,099,743 - MPMX20_01043 0.37 -0.5 1,099,760 - MPMX20_01043 0.38 +1.0 1,099,774 + MPMX20_01043 0.39 +1.0 1,099,816 - MPMX20_01043 0.42 -0.4 1,099,835 + MPMX20_01043 0.44 -1.0 1,099,838 - MPMX20_01043 0.44 +0.2 1,099,848 - MPMX20_01043 0.45 +0.2 1,099,869 + MPMX20_01043 0.46 -0.6 1,099,877 - MPMX20_01043 0.47 +0.3 1,099,877 - MPMX20_01043 0.47 +1.4 1,099,903 - MPMX20_01043 0.49 +4.1 1,099,927 - MPMX20_01043 0.51 +2.2 1,099,937 + MPMX20_01043 0.52 +0.7 1,099,962 + MPMX20_01043 0.54 -1.4 1,100,018 + MPMX20_01043 0.58 +0.1 1,100,023 + MPMX20_01043 0.58 +0.9 1,100,026 - MPMX20_01043 0.59 +0.1 1,100,044 + MPMX20_01043 0.60 -1.1 1,100,047 - MPMX20_01043 0.60 +0.4 1,100,054 + MPMX20_01043 0.61 -1.0 1,100,075 - MPMX20_01043 0.62 +0.7 1,100,095 + MPMX20_01043 0.64 -0.8 1,100,095 + MPMX20_01043 0.64 -0.4 1,100,101 + MPMX20_01043 0.64 -0.7 1,100,103 - MPMX20_01043 0.65 +0.8 1,100,121 + MPMX20_01043 0.66 -1.1 1,100,151 - MPMX20_01043 0.68 +0.6 1,100,154 + MPMX20_01043 0.69 -1.4 1,100,252 - MPMX20_01043 0.76 -0.1 1,100,252 - MPMX20_01043 0.76 +3.2 1,100,259 + MPMX20_01043 0.77 -0.4 1,100,351 + MPMX20_01043 0.84 -0.6 1,100,409 - MPMX20_01043 0.88 -0.3 1,100,454 + +1.4 1,100,521 - -0.1 1,100,521 - -0.4 1,100,580 - -0.7 1,100,580 - -1.8 1,100,615 - -0.8 1,100,625 + -0.8 1,100,633 - +0.6 1,100,633 - -0.4 1,100,655 - -0.0 1,100,657 + +1.2 1,100,694 + -0.1 1,100,694 + +1.7 1,100,694 + +1.2 1,100,702 - -0.9 1,100,744 - MPMX20_01044 0.13 +2.5 1,100,759 - MPMX20_01044 0.15 -0.6 1,100,759 - MPMX20_01044 0.15 +1.8 1,100,759 - MPMX20_01044 0.15 -0.4 1,100,775 - MPMX20_01044 0.16 +0.2 1,100,784 + MPMX20_01044 0.18 -0.8 1,100,847 + MPMX20_01044 0.25 -0.9 1,100,999 + MPMX20_01044 0.43 +0.6 1,101,046 + MPMX20_01044 0.48 -1.2 1,101,053 - MPMX20_01044 0.49 +1.2 1,101,119 - MPMX20_01044 0.56 -1.9 1,101,202 - MPMX20_01044 0.66 -1.3 1,101,214 + MPMX20_01044 0.67 +0.1 1,101,229 + MPMX20_01044 0.69 +0.9 1,101,237 - MPMX20_01044 0.70 +0.4 1,101,262 + MPMX20_01044 0.73 -0.4 1,101,347 + MPMX20_01044 0.83 +0.9 1,101,357 - MPMX20_01044 0.84 +0.6 1,101,405 - MPMX20_01044 0.90 +0.9 1,101,423 + -0.6 1,101,481 + +1.2 1,101,481 + -0.8 1,101,481 + -0.3 1,101,481 + -0.3 1,101,501 - -0.5 1,101,529 - -0.7 1,101,531 + -0.6 1,101,533 + -0.2 1,101,611 - -1.3 1,101,722 - -1.0 1,101,750 - MPMX20_01045 0.10 -0.8 1,101,752 + MPMX20_01045 0.10 -0.1 1,101,760 - MPMX20_01045 0.12 -0.7 1,101,809 - MPMX20_01045 0.21 +0.1 1,101,832 - MPMX20_01045 0.26 +0.0 1,101,842 - MPMX20_01045 0.27 +2.9 1,101,861 - MPMX20_01045 0.31 +1.0 1,101,899 + MPMX20_01045 0.38 -1.4 1,101,907 - MPMX20_01045 0.40 +0.1 1,101,907 - MPMX20_01045 0.40 -1.1 1,101,952 - MPMX20_01045 0.48 +0.8 1,101,961 - MPMX20_01045 0.50 +0.6 1,101,985 + MPMX20_01045 0.55 -1.8 1,101,993 - MPMX20_01045 0.56 -0.2 1,101,993 - MPMX20_01045 0.56 +0.3 1,101,993 - MPMX20_01045 0.56 +0.2 1,102,005 + MPMX20_01045 0.58 -0.9 1,102,034 - MPMX20_01045 0.64 -0.0 1,102,041 - MPMX20_01045 0.65 +0.6 1,102,042 - MPMX20_01045 0.65 +0.6 1,102,208 + +1.3 1,102,218 + -0.2 1,102,221 - -0.2 1,102,227 - -0.7 1,102,233 + +0.4 1,102,235 - +2.1 1,102,235 - +0.3 1,102,251 + +0.4 1,102,261 - -1.4 1,102,261 - -0.2 1,102,261 - +0.5 1,102,303 + MPMX20_01046 0.15 -1.3 1,102,319 - MPMX20_01046 0.21 -0.2 1,102,321 - MPMX20_01046 0.21 -0.7 1,102,355 - MPMX20_01046 0.32 +0.8 1,102,394 + MPMX20_01046 0.45 -1.9 1,102,397 - MPMX20_01046 0.46 -0.5 1,102,423 + MPMX20_01046 0.54 +0.6 1,102,444 - MPMX20_01046 0.61 -0.3
Or see this region's nucleotide sequence