Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04236 and MPMX20_04237 are separated by 7 nucleotides MPMX20_04237 and MPMX20_04238 overlap by 1 nucleotides MPMX20_04238 and MPMX20_04239 overlap by 1 nucleotides MPMX20_04239 and MPMX20_04240 are separated by 166 nucleotides
MPMX20_04236: MPMX20_04236 - Protein TusB, at 4,422,295 to 4,422,582
_04236
MPMX20_04237: MPMX20_04237 - Protein TusC, at 4,422,590 to 4,422,949
_04237
MPMX20_04238: MPMX20_04238 - Sulfurtransferase TusD, at 4,422,949 to 4,423,335
_04238
MPMX20_04239: MPMX20_04239 - Transcriptional regulator DauR, at 4,423,335 to 4,424,057
_04239
MPMX20_04240: MPMX20_04240 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA, at 4,424,224 to 4,425,045
_04240
Position (kb)
4423
4424
4425 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4422.585 kb on - strand at 4423.391 kb on - strand at 4423.527 kb on - strand, within MPMX20_04239 at 4423.541 kb on + strand, within MPMX20_04239 at 4423.682 kb on - strand, within MPMX20_04239 at 4423.770 kb on - strand, within MPMX20_04239 at 4423.819 kb on - strand, within MPMX20_04239 at 4423.891 kb on - strand, within MPMX20_04239 at 4423.891 kb on - strand, within MPMX20_04239 at 4423.892 kb on - strand, within MPMX20_04239 at 4423.945 kb on - strand, within MPMX20_04239 at 4423.945 kb on - strand, within MPMX20_04239 at 4423.945 kb on - strand, within MPMX20_04239 at 4423.945 kb on - strand, within MPMX20_04239 at 4423.945 kb on - strand, within MPMX20_04239 at 4423.945 kb on - strand, within MPMX20_04239 at 4423.999 kb on - strand at 4424.045 kb on - strand at 4424.093 kb on - strand at 4424.105 kb on + strand at 4424.138 kb on - strand at 4424.152 kb on - strand at 4424.198 kb on + strand at 4424.206 kb on - strand at 4424.294 kb on + strand at 4424.294 kb on + strand at 4424.294 kb on + strand at 4424.302 kb on - strand at 4424.302 kb on - strand at 4424.302 kb on - strand at 4424.310 kb on + strand, within MPMX20_04240 at 4424.328 kb on + strand, within MPMX20_04240 at 4424.328 kb on + strand, within MPMX20_04240 at 4424.328 kb on + strand, within MPMX20_04240 at 4424.328 kb on + strand, within MPMX20_04240 at 4424.336 kb on - strand, within MPMX20_04240 at 4424.343 kb on - strand, within MPMX20_04240 at 4424.472 kb on - strand, within MPMX20_04240 at 4424.472 kb on - strand, within MPMX20_04240 at 4424.478 kb on + strand, within MPMX20_04240 at 4424.478 kb on + strand, within MPMX20_04240 at 4424.478 kb on + strand, within MPMX20_04240 at 4424.486 kb on + strand, within MPMX20_04240 at 4424.486 kb on + strand, within MPMX20_04240 at 4424.486 kb on + strand, within MPMX20_04240 at 4424.486 kb on + strand, within MPMX20_04240 at 4424.494 kb on - strand, within MPMX20_04240 at 4424.494 kb on - strand, within MPMX20_04240 at 4424.554 kb on + strand, within MPMX20_04240 at 4424.554 kb on + strand, within MPMX20_04240 at 4424.562 kb on - strand, within MPMX20_04240 at 4424.562 kb on - strand, within MPMX20_04240 at 4424.599 kb on - strand, within MPMX20_04240 at 4424.604 kb on - strand, within MPMX20_04240 at 4424.650 kb on - strand, within MPMX20_04240 at 4424.653 kb on + strand, within MPMX20_04240 at 4424.711 kb on + strand, within MPMX20_04240 at 4424.758 kb on + strand, within MPMX20_04240 at 4424.796 kb on - strand, within MPMX20_04240 at 4424.814 kb on - strand, within MPMX20_04240 at 4424.816 kb on - strand, within MPMX20_04240 at 4424.880 kb on - strand, within MPMX20_04240 at 4424.925 kb on + strand, within MPMX20_04240 at 4424.927 kb on + strand, within MPMX20_04240 at 4424.933 kb on - strand, within MPMX20_04240 at 4424.935 kb on + strand, within MPMX20_04240 at 4424.940 kb on - strand, within MPMX20_04240 at 4424.953 kb on + strand, within MPMX20_04240 at 4424.963 kb on + strand at 4424.972 kb on + strand at 4424.977 kb on + strand at 4424.980 kb on - strand at 4425.021 kb on + strand at 4425.021 kb on + strand at 4425.026 kb on + strand at 4425.034 kb on - strand at 4425.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027 remove 4,422,585 - -1.0 4,423,391 - -0.3 4,423,527 - MPMX20_04239 0.27 -0.2 4,423,541 + MPMX20_04239 0.28 +0.3 4,423,682 - MPMX20_04239 0.48 -0.8 4,423,770 - MPMX20_04239 0.60 -0.1 4,423,819 - MPMX20_04239 0.67 -0.9 4,423,891 - MPMX20_04239 0.77 -0.5 4,423,891 - MPMX20_04239 0.77 -0.7 4,423,892 - MPMX20_04239 0.77 +0.3 4,423,945 - MPMX20_04239 0.84 -0.5 4,423,945 - MPMX20_04239 0.84 +0.1 4,423,945 - MPMX20_04239 0.84 +1.0 4,423,945 - MPMX20_04239 0.84 -0.8 4,423,945 - MPMX20_04239 0.84 +3.1 4,423,945 - MPMX20_04239 0.84 +1.0 4,423,999 - -0.1 4,424,045 - +1.6 4,424,093 - -0.3 4,424,105 + +2.3 4,424,138 - +2.0 4,424,152 - -0.5 4,424,198 + +0.2 4,424,206 - +0.2 4,424,294 + +0.7 4,424,294 + +3.0 4,424,294 + +1.0 4,424,302 - +0.1 4,424,302 - -0.7 4,424,302 - +0.1 4,424,310 + MPMX20_04240 0.10 -0.9 4,424,328 + MPMX20_04240 0.13 -1.3 4,424,328 + MPMX20_04240 0.13 -0.8 4,424,328 + MPMX20_04240 0.13 +0.0 4,424,328 + MPMX20_04240 0.13 -0.8 4,424,336 - MPMX20_04240 0.14 -0.3 4,424,343 - MPMX20_04240 0.14 +0.0 4,424,472 - MPMX20_04240 0.30 -0.5 4,424,472 - MPMX20_04240 0.30 -0.9 4,424,478 + MPMX20_04240 0.31 -1.0 4,424,478 + MPMX20_04240 0.31 +0.3 4,424,478 + MPMX20_04240 0.31 +1.1 4,424,486 + MPMX20_04240 0.32 +1.1 4,424,486 + MPMX20_04240 0.32 -1.6 4,424,486 + MPMX20_04240 0.32 -1.9 4,424,486 + MPMX20_04240 0.32 +0.3 4,424,494 - MPMX20_04240 0.33 +0.3 4,424,494 - MPMX20_04240 0.33 -1.4 4,424,554 + MPMX20_04240 0.40 +1.3 4,424,554 + MPMX20_04240 0.40 +0.7 4,424,562 - MPMX20_04240 0.41 -1.5 4,424,562 - MPMX20_04240 0.41 -0.8 4,424,599 - MPMX20_04240 0.46 -1.8 4,424,604 - MPMX20_04240 0.46 -0.8 4,424,650 - MPMX20_04240 0.52 -0.9 4,424,653 + MPMX20_04240 0.52 -3.1 4,424,711 + MPMX20_04240 0.59 -0.8 4,424,758 + MPMX20_04240 0.65 -1.5 4,424,796 - MPMX20_04240 0.70 -2.4 4,424,814 - MPMX20_04240 0.72 +0.7 4,424,816 - MPMX20_04240 0.72 +0.7 4,424,880 - MPMX20_04240 0.80 -1.7 4,424,925 + MPMX20_04240 0.85 -1.1 4,424,927 + MPMX20_04240 0.86 -2.1 4,424,933 - MPMX20_04240 0.86 -0.5 4,424,935 + MPMX20_04240 0.86 +2.9 4,424,940 - MPMX20_04240 0.87 +0.3 4,424,953 + MPMX20_04240 0.89 -0.7 4,424,963 + -1.3 4,424,972 + -1.6 4,424,977 + +0.2 4,424,980 - +1.3 4,425,021 + -0.7 4,425,021 + +0.2 4,425,026 + +1.1 4,425,034 - +0.2 4,425,034 - -2.7
Or see this region's nucleotide sequence