Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04239

Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04236 and MPMX20_04237 are separated by 7 nucleotidesMPMX20_04237 and MPMX20_04238 overlap by 1 nucleotidesMPMX20_04238 and MPMX20_04239 overlap by 1 nucleotidesMPMX20_04239 and MPMX20_04240 are separated by 166 nucleotides MPMX20_04236: MPMX20_04236 - Protein TusB, at 4,422,295 to 4,422,582 _04236 MPMX20_04237: MPMX20_04237 - Protein TusC, at 4,422,590 to 4,422,949 _04237 MPMX20_04238: MPMX20_04238 - Sulfurtransferase TusD, at 4,422,949 to 4,423,335 _04238 MPMX20_04239: MPMX20_04239 - Transcriptional regulator DauR, at 4,423,335 to 4,424,057 _04239 MPMX20_04240: MPMX20_04240 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA, at 4,424,224 to 4,425,045 _04240 Position (kb) 4423 4424 4425Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4422.585 kb on - strandat 4423.391 kb on - strandat 4423.527 kb on - strand, within MPMX20_04239at 4423.541 kb on + strand, within MPMX20_04239at 4423.682 kb on - strand, within MPMX20_04239at 4423.770 kb on - strand, within MPMX20_04239at 4423.819 kb on - strand, within MPMX20_04239at 4423.891 kb on - strand, within MPMX20_04239at 4423.891 kb on - strand, within MPMX20_04239at 4423.892 kb on - strand, within MPMX20_04239at 4423.945 kb on - strand, within MPMX20_04239at 4423.945 kb on - strand, within MPMX20_04239at 4423.945 kb on - strand, within MPMX20_04239at 4423.945 kb on - strand, within MPMX20_04239at 4423.945 kb on - strand, within MPMX20_04239at 4423.945 kb on - strand, within MPMX20_04239at 4423.999 kb on - strandat 4424.045 kb on - strandat 4424.093 kb on - strandat 4424.105 kb on + strandat 4424.138 kb on - strandat 4424.152 kb on - strandat 4424.198 kb on + strandat 4424.206 kb on - strandat 4424.294 kb on + strandat 4424.294 kb on + strandat 4424.294 kb on + strandat 4424.302 kb on - strandat 4424.302 kb on - strandat 4424.302 kb on - strandat 4424.310 kb on + strand, within MPMX20_04240at 4424.328 kb on + strand, within MPMX20_04240at 4424.328 kb on + strand, within MPMX20_04240at 4424.328 kb on + strand, within MPMX20_04240at 4424.328 kb on + strand, within MPMX20_04240at 4424.336 kb on - strand, within MPMX20_04240at 4424.343 kb on - strand, within MPMX20_04240at 4424.472 kb on - strand, within MPMX20_04240at 4424.472 kb on - strand, within MPMX20_04240at 4424.478 kb on + strand, within MPMX20_04240at 4424.478 kb on + strand, within MPMX20_04240at 4424.478 kb on + strand, within MPMX20_04240at 4424.486 kb on + strand, within MPMX20_04240at 4424.486 kb on + strand, within MPMX20_04240at 4424.486 kb on + strand, within MPMX20_04240at 4424.486 kb on + strand, within MPMX20_04240at 4424.494 kb on - strand, within MPMX20_04240at 4424.494 kb on - strand, within MPMX20_04240at 4424.554 kb on + strand, within MPMX20_04240at 4424.554 kb on + strand, within MPMX20_04240at 4424.562 kb on - strand, within MPMX20_04240at 4424.562 kb on - strand, within MPMX20_04240at 4424.599 kb on - strand, within MPMX20_04240at 4424.604 kb on - strand, within MPMX20_04240at 4424.650 kb on - strand, within MPMX20_04240at 4424.653 kb on + strand, within MPMX20_04240at 4424.711 kb on + strand, within MPMX20_04240at 4424.758 kb on + strand, within MPMX20_04240at 4424.796 kb on - strand, within MPMX20_04240at 4424.814 kb on - strand, within MPMX20_04240at 4424.816 kb on - strand, within MPMX20_04240at 4424.880 kb on - strand, within MPMX20_04240at 4424.925 kb on + strand, within MPMX20_04240at 4424.927 kb on + strand, within MPMX20_04240at 4424.933 kb on - strand, within MPMX20_04240at 4424.935 kb on + strand, within MPMX20_04240at 4424.940 kb on - strand, within MPMX20_04240at 4424.953 kb on + strand, within MPMX20_04240at 4424.963 kb on + strandat 4424.972 kb on + strandat 4424.977 kb on + strandat 4424.980 kb on - strandat 4425.021 kb on + strandat 4425.021 kb on + strandat 4425.026 kb on + strandat 4425.034 kb on - strandat 4425.034 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
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4,422,585 - -1.0
4,423,391 - -0.3
4,423,527 - MPMX20_04239 0.27 -0.2
4,423,541 + MPMX20_04239 0.28 +0.3
4,423,682 - MPMX20_04239 0.48 -0.8
4,423,770 - MPMX20_04239 0.60 -0.1
4,423,819 - MPMX20_04239 0.67 -0.9
4,423,891 - MPMX20_04239 0.77 -0.5
4,423,891 - MPMX20_04239 0.77 -0.7
4,423,892 - MPMX20_04239 0.77 +0.3
4,423,945 - MPMX20_04239 0.84 -0.5
4,423,945 - MPMX20_04239 0.84 +0.1
4,423,945 - MPMX20_04239 0.84 +1.0
4,423,945 - MPMX20_04239 0.84 -0.8
4,423,945 - MPMX20_04239 0.84 +3.1
4,423,945 - MPMX20_04239 0.84 +1.0
4,423,999 - -0.1
4,424,045 - +1.6
4,424,093 - -0.3
4,424,105 + +2.3
4,424,138 - +2.0
4,424,152 - -0.5
4,424,198 + +0.2
4,424,206 - +0.2
4,424,294 + +0.7
4,424,294 + +3.0
4,424,294 + +1.0
4,424,302 - +0.1
4,424,302 - -0.7
4,424,302 - +0.1
4,424,310 + MPMX20_04240 0.10 -0.9
4,424,328 + MPMX20_04240 0.13 -1.3
4,424,328 + MPMX20_04240 0.13 -0.8
4,424,328 + MPMX20_04240 0.13 +0.0
4,424,328 + MPMX20_04240 0.13 -0.8
4,424,336 - MPMX20_04240 0.14 -0.3
4,424,343 - MPMX20_04240 0.14 +0.0
4,424,472 - MPMX20_04240 0.30 -0.5
4,424,472 - MPMX20_04240 0.30 -0.9
4,424,478 + MPMX20_04240 0.31 -1.0
4,424,478 + MPMX20_04240 0.31 +0.3
4,424,478 + MPMX20_04240 0.31 +1.1
4,424,486 + MPMX20_04240 0.32 +1.1
4,424,486 + MPMX20_04240 0.32 -1.6
4,424,486 + MPMX20_04240 0.32 -1.9
4,424,486 + MPMX20_04240 0.32 +0.3
4,424,494 - MPMX20_04240 0.33 +0.3
4,424,494 - MPMX20_04240 0.33 -1.4
4,424,554 + MPMX20_04240 0.40 +1.3
4,424,554 + MPMX20_04240 0.40 +0.7
4,424,562 - MPMX20_04240 0.41 -1.5
4,424,562 - MPMX20_04240 0.41 -0.8
4,424,599 - MPMX20_04240 0.46 -1.8
4,424,604 - MPMX20_04240 0.46 -0.8
4,424,650 - MPMX20_04240 0.52 -0.9
4,424,653 + MPMX20_04240 0.52 -3.1
4,424,711 + MPMX20_04240 0.59 -0.8
4,424,758 + MPMX20_04240 0.65 -1.5
4,424,796 - MPMX20_04240 0.70 -2.4
4,424,814 - MPMX20_04240 0.72 +0.7
4,424,816 - MPMX20_04240 0.72 +0.7
4,424,880 - MPMX20_04240 0.80 -1.7
4,424,925 + MPMX20_04240 0.85 -1.1
4,424,927 + MPMX20_04240 0.86 -2.1
4,424,933 - MPMX20_04240 0.86 -0.5
4,424,935 + MPMX20_04240 0.86 +2.9
4,424,940 - MPMX20_04240 0.87 +0.3
4,424,953 + MPMX20_04240 0.89 -0.7
4,424,963 + -1.3
4,424,972 + -1.6
4,424,977 + +0.2
4,424,980 - +1.3
4,425,021 + -0.7
4,425,021 + +0.2
4,425,026 + +1.1
4,425,034 - +0.2
4,425,034 - -2.7

Or see this region's nucleotide sequence