Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03994 and MPMX20_03995 are separated by 61 nucleotides MPMX20_03995 and MPMX20_03996 are separated by 85 nucleotides MPMX20_03996 and MPMX20_03997 are separated by 70 nucleotides
MPMX20_03994: MPMX20_03994 - 2,4-dienoyl-CoA reductase, at 4,189,894 to 4,191,915
_03994
MPMX20_03995: MPMX20_03995 - Ribosomal RNA large subunit methyltransferase G, at 4,191,977 to 4,193,113
_03995
MPMX20_03996: MPMX20_03996 - UTP pyrophosphatase, at 4,193,199 to 4,193,702
_03996
MPMX20_03997: MPMX20_03997 - scyllo-inositol 2-dehydrogenase (NADP(+)) IolU, at 4,193,773 to 4,194,771
_03997
Position (kb)
4191
4192
4193
4194 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8 at 4191.052 kb on + strand, within MPMX20_03994 at 4191.092 kb on + strand, within MPMX20_03994 at 4191.092 kb on + strand, within MPMX20_03994 at 4191.100 kb on - strand, within MPMX20_03994 at 4191.215 kb on + strand, within MPMX20_03994 at 4191.300 kb on + strand, within MPMX20_03994 at 4191.337 kb on + strand, within MPMX20_03994 at 4191.337 kb on + strand, within MPMX20_03994 at 4191.345 kb on - strand, within MPMX20_03994 at 4191.347 kb on + strand, within MPMX20_03994 at 4191.394 kb on + strand, within MPMX20_03994 at 4191.434 kb on + strand, within MPMX20_03994 at 4191.434 kb on + strand, within MPMX20_03994 at 4191.442 kb on - strand, within MPMX20_03994 at 4191.468 kb on - strand, within MPMX20_03994 at 4191.506 kb on + strand, within MPMX20_03994 at 4191.506 kb on + strand, within MPMX20_03994 at 4191.506 kb on + strand, within MPMX20_03994 at 4191.506 kb on + strand, within MPMX20_03994 at 4191.506 kb on + strand, within MPMX20_03994 at 4191.506 kb on + strand, within MPMX20_03994 at 4191.506 kb on + strand, within MPMX20_03994 at 4191.514 kb on - strand, within MPMX20_03994 at 4191.514 kb on - strand, within MPMX20_03994 at 4191.514 kb on - strand, within MPMX20_03994 at 4191.514 kb on - strand, within MPMX20_03994 at 4191.514 kb on - strand, within MPMX20_03994 at 4191.514 kb on - strand, within MPMX20_03994 at 4191.514 kb on - strand, within MPMX20_03994 at 4191.514 kb on - strand, within MPMX20_03994 at 4191.516 kb on + strand, within MPMX20_03994 at 4191.607 kb on + strand, within MPMX20_03994 at 4191.638 kb on + strand, within MPMX20_03994 at 4191.891 kb on - strand at 4191.895 kb on + strand at 4191.896 kb on - strand at 4191.896 kb on - strand at 4191.898 kb on - strand at 4191.898 kb on - strand at 4191.898 kb on - strand at 4191.908 kb on - strand at 4191.927 kb on - strand at 4191.946 kb on + strand at 4191.955 kb on + strand at 4191.956 kb on + strand at 4191.970 kb on - strand at 4192.004 kb on + strand at 4192.098 kb on + strand, within MPMX20_03995 at 4192.109 kb on - strand, within MPMX20_03995 at 4192.142 kb on + strand, within MPMX20_03995 at 4192.200 kb on + strand, within MPMX20_03995 at 4192.220 kb on - strand, within MPMX20_03995 at 4192.233 kb on + strand, within MPMX20_03995 at 4192.233 kb on + strand, within MPMX20_03995 at 4192.233 kb on + strand, within MPMX20_03995 at 4192.241 kb on - strand, within MPMX20_03995 at 4192.278 kb on - strand, within MPMX20_03995 at 4192.292 kb on + strand, within MPMX20_03995 at 4192.318 kb on - strand, within MPMX20_03995 at 4192.324 kb on - strand, within MPMX20_03995 at 4192.365 kb on - strand, within MPMX20_03995 at 4192.389 kb on + strand, within MPMX20_03995 at 4192.414 kb on - strand, within MPMX20_03995 at 4192.510 kb on + strand, within MPMX20_03995 at 4192.532 kb on - strand, within MPMX20_03995 at 4192.534 kb on + strand, within MPMX20_03995 at 4192.541 kb on + strand, within MPMX20_03995 at 4192.642 kb on - strand, within MPMX20_03995 at 4192.660 kb on + strand, within MPMX20_03995 at 4192.660 kb on + strand, within MPMX20_03995 at 4192.668 kb on - strand, within MPMX20_03995 at 4192.714 kb on + strand, within MPMX20_03995 at 4192.722 kb on + strand, within MPMX20_03995 at 4192.747 kb on - strand, within MPMX20_03995 at 4192.791 kb on - strand, within MPMX20_03995 at 4192.820 kb on + strand, within MPMX20_03995 at 4192.846 kb on - strand, within MPMX20_03995 at 4192.915 kb on - strand, within MPMX20_03995 at 4192.932 kb on + strand, within MPMX20_03995 at 4192.935 kb on - strand, within MPMX20_03995 at 4192.937 kb on + strand, within MPMX20_03995 at 4193.044 kb on + strand at 4193.052 kb on - strand at 4193.057 kb on - strand at 4193.070 kb on + strand at 4193.070 kb on + strand at 4193.079 kb on - strand at 4193.079 kb on - strand at 4193.094 kb on + strand at 4193.113 kb on - strand at 4193.217 kb on + strand at 4193.225 kb on - strand at 4193.392 kb on + strand, within MPMX20_03996 at 4193.396 kb on - strand, within MPMX20_03996 at 4193.447 kb on + strand, within MPMX20_03996 at 4193.480 kb on + strand, within MPMX20_03996 at 4193.480 kb on + strand, within MPMX20_03996 at 4193.527 kb on + strand, within MPMX20_03996 at 4193.535 kb on - strand, within MPMX20_03996 at 4193.572 kb on + strand, within MPMX20_03996 at 4193.591 kb on + strand, within MPMX20_03996 at 4193.591 kb on + strand, within MPMX20_03996 at 4193.617 kb on + strand, within MPMX20_03996 at 4193.625 kb on - strand, within MPMX20_03996 at 4193.736 kb on + strand at 4193.736 kb on + strand at 4193.744 kb on - strand at 4193.744 kb on - strand at 4193.744 kb on - strand at 4193.759 kb on - strand at 4193.864 kb on - strand at 4193.866 kb on - strand at 4193.876 kb on + strand, within MPMX20_03997 at 4193.876 kb on + strand, within MPMX20_03997 at 4193.876 kb on + strand, within MPMX20_03997 at 4193.876 kb on + strand, within MPMX20_03997 at 4193.876 kb on + strand, within MPMX20_03997 at 4193.876 kb on + strand, within MPMX20_03997 at 4193.876 kb on + strand, within MPMX20_03997 at 4193.884 kb on - strand, within MPMX20_03997 at 4193.884 kb on - strand, within MPMX20_03997 at 4193.884 kb on - strand, within MPMX20_03997 at 4193.886 kb on + strand, within MPMX20_03997 at 4193.887 kb on + strand, within MPMX20_03997 at 4193.920 kb on + strand, within MPMX20_03997 at 4193.925 kb on + strand, within MPMX20_03997 at 4193.943 kb on - strand, within MPMX20_03997 at 4193.971 kb on + strand, within MPMX20_03997 at 4193.971 kb on + strand, within MPMX20_03997 at 4193.979 kb on - strand, within MPMX20_03997 at 4194.057 kb on + strand, within MPMX20_03997
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027 remove 4,191,052 + MPMX20_03994 0.57 +1.5 4,191,092 + MPMX20_03994 0.59 -0.6 4,191,092 + MPMX20_03994 0.59 -1.3 4,191,100 - MPMX20_03994 0.60 +0.3 4,191,215 + MPMX20_03994 0.65 -1.2 4,191,300 + MPMX20_03994 0.70 +1.1 4,191,337 + MPMX20_03994 0.71 +1.3 4,191,337 + MPMX20_03994 0.71 +0.4 4,191,345 - MPMX20_03994 0.72 +0.3 4,191,347 + MPMX20_03994 0.72 -0.0 4,191,394 + MPMX20_03994 0.74 +0.7 4,191,434 + MPMX20_03994 0.76 -1.3 4,191,434 + MPMX20_03994 0.76 -1.9 4,191,442 - MPMX20_03994 0.77 +0.7 4,191,468 - MPMX20_03994 0.78 -0.8 4,191,506 + MPMX20_03994 0.80 -0.3 4,191,506 + MPMX20_03994 0.80 +0.2 4,191,506 + MPMX20_03994 0.80 -1.1 4,191,506 + MPMX20_03994 0.80 -0.4 4,191,506 + MPMX20_03994 0.80 -1.4 4,191,506 + MPMX20_03994 0.80 +3.3 4,191,506 + MPMX20_03994 0.80 +1.3 4,191,514 - MPMX20_03994 0.80 -0.5 4,191,514 - MPMX20_03994 0.80 -0.3 4,191,514 - MPMX20_03994 0.80 -0.7 4,191,514 - MPMX20_03994 0.80 +0.3 4,191,514 - MPMX20_03994 0.80 +0.7 4,191,514 - MPMX20_03994 0.80 -0.5 4,191,514 - MPMX20_03994 0.80 -1.6 4,191,514 - MPMX20_03994 0.80 +1.3 4,191,516 + MPMX20_03994 0.80 -2.1 4,191,607 + MPMX20_03994 0.85 +1.3 4,191,638 + MPMX20_03994 0.86 +0.5 4,191,891 - -0.6 4,191,895 + +0.4 4,191,896 - -1.1 4,191,896 - +0.4 4,191,898 - +0.0 4,191,898 - +0.3 4,191,898 - -1.6 4,191,908 - -1.3 4,191,927 - -2.1 4,191,946 + +0.0 4,191,955 + -0.3 4,191,956 + +0.1 4,191,970 - -2.4 4,192,004 + -1.2 4,192,098 + MPMX20_03995 0.11 -1.8 4,192,109 - MPMX20_03995 0.12 +0.5 4,192,142 + MPMX20_03995 0.15 +2.3 4,192,200 + MPMX20_03995 0.20 -0.8 4,192,220 - MPMX20_03995 0.21 +0.2 4,192,233 + MPMX20_03995 0.23 -0.3 4,192,233 + MPMX20_03995 0.23 -0.1 4,192,233 + MPMX20_03995 0.23 +2.3 4,192,241 - MPMX20_03995 0.23 -0.8 4,192,278 - MPMX20_03995 0.26 +0.1 4,192,292 + MPMX20_03995 0.28 -0.5 4,192,318 - MPMX20_03995 0.30 -1.3 4,192,324 - MPMX20_03995 0.31 +0.8 4,192,365 - MPMX20_03995 0.34 -0.5 4,192,389 + MPMX20_03995 0.36 -0.6 4,192,414 - MPMX20_03995 0.38 +0.0 4,192,510 + MPMX20_03995 0.47 -0.5 4,192,532 - MPMX20_03995 0.49 -0.2 4,192,534 + MPMX20_03995 0.49 +3.5 4,192,541 + MPMX20_03995 0.50 -2.0 4,192,642 - MPMX20_03995 0.58 +0.3 4,192,660 + MPMX20_03995 0.60 -0.7 4,192,660 + MPMX20_03995 0.60 -1.3 4,192,668 - MPMX20_03995 0.61 -1.2 4,192,714 + MPMX20_03995 0.65 -0.5 4,192,722 + MPMX20_03995 0.66 +0.7 4,192,747 - MPMX20_03995 0.68 +0.9 4,192,791 - MPMX20_03995 0.72 -0.4 4,192,820 + MPMX20_03995 0.74 -0.8 4,192,846 - MPMX20_03995 0.76 -0.4 4,192,915 - MPMX20_03995 0.82 -1.0 4,192,932 + MPMX20_03995 0.84 -1.3 4,192,935 - MPMX20_03995 0.84 -0.9 4,192,937 + MPMX20_03995 0.84 +1.1 4,193,044 + -1.5 4,193,052 - +1.2 4,193,057 - -0.8 4,193,070 + +1.5 4,193,070 + -1.1 4,193,079 - -1.7 4,193,079 - -0.8 4,193,094 + -0.2 4,193,113 - +0.6 4,193,217 + -1.1 4,193,225 - +0.7 4,193,392 + MPMX20_03996 0.38 -1.2 4,193,396 - MPMX20_03996 0.39 -1.3 4,193,447 + MPMX20_03996 0.49 +2.7 4,193,480 + MPMX20_03996 0.56 +0.2 4,193,480 + MPMX20_03996 0.56 -1.6 4,193,527 + MPMX20_03996 0.65 +0.1 4,193,535 - MPMX20_03996 0.67 +0.2 4,193,572 + MPMX20_03996 0.74 +0.6 4,193,591 + MPMX20_03996 0.78 -0.3 4,193,591 + MPMX20_03996 0.78 +0.7 4,193,617 + MPMX20_03996 0.83 +8.5 4,193,625 - MPMX20_03996 0.85 +0.6 4,193,736 + -0.1 4,193,736 + -0.0 4,193,744 - +1.5 4,193,744 - -1.5 4,193,744 - +1.3 4,193,759 - -0.0 4,193,864 - -0.5 4,193,866 - +0.1 4,193,876 + MPMX20_03997 0.10 +0.7 4,193,876 + MPMX20_03997 0.10 -1.3 4,193,876 + MPMX20_03997 0.10 +2.3 4,193,876 + MPMX20_03997 0.10 -0.2 4,193,876 + MPMX20_03997 0.10 -1.4 4,193,876 + MPMX20_03997 0.10 -0.1 4,193,876 + MPMX20_03997 0.10 +0.3 4,193,884 - MPMX20_03997 0.11 -0.3 4,193,884 - MPMX20_03997 0.11 +0.3 4,193,884 - MPMX20_03997 0.11 -0.3 4,193,886 + MPMX20_03997 0.11 +3.1 4,193,887 + MPMX20_03997 0.11 -0.6 4,193,920 + MPMX20_03997 0.15 -0.4 4,193,925 + MPMX20_03997 0.15 +1.4 4,193,943 - MPMX20_03997 0.17 -0.2 4,193,971 + MPMX20_03997 0.20 -1.0 4,193,971 + MPMX20_03997 0.20 +0.0 4,193,979 - MPMX20_03997 0.21 -0.2 4,194,057 + MPMX20_03997 0.28 -2.4
Or see this region's nucleotide sequence