Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03973

Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03972 and MPMX20_03973 are separated by 7 nucleotidesMPMX20_03973 and MPMX20_03974 overlap by 1 nucleotidesMPMX20_03974 and MPMX20_03975 are separated by 67 nucleotidesMPMX20_03975 and MPMX20_03976 are separated by 287 nucleotides MPMX20_03972: MPMX20_03972 - hypothetical protein, at 4,166,986 to 4,169,181 _03972 MPMX20_03973: MPMX20_03973 - Protein TraR, at 4,169,189 to 4,169,410 _03973 MPMX20_03974: MPMX20_03974 - hypothetical protein, at 4,169,410 to 4,169,637 _03974 MPMX20_03975: MPMX20_03975 - hypothetical protein, at 4,169,705 to 4,170,043 _03975 MPMX20_03976: MPMX20_03976 - hypothetical protein, at 4,170,331 to 4,170,906 _03976 Position (kb) 4169 4170Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 4168.192 kb on + strand, within MPMX20_03972at 4168.192 kb on + strand, within MPMX20_03972at 4168.200 kb on - strand, within MPMX20_03972at 4168.200 kb on - strand, within MPMX20_03972at 4168.200 kb on - strand, within MPMX20_03972at 4168.200 kb on - strand, within MPMX20_03972at 4168.229 kb on + strand, within MPMX20_03972at 4168.237 kb on - strand, within MPMX20_03972at 4168.237 kb on - strand, within MPMX20_03972at 4168.237 kb on - strand, within MPMX20_03972at 4168.249 kb on + strand, within MPMX20_03972at 4168.254 kb on + strand, within MPMX20_03972at 4168.255 kb on - strand, within MPMX20_03972at 4168.288 kb on + strand, within MPMX20_03972at 4168.288 kb on + strand, within MPMX20_03972at 4168.350 kb on + strand, within MPMX20_03972at 4168.350 kb on + strand, within MPMX20_03972at 4168.380 kb on + strand, within MPMX20_03972at 4168.388 kb on - strand, within MPMX20_03972at 4168.439 kb on - strand, within MPMX20_03972at 4168.494 kb on + strand, within MPMX20_03972at 4168.500 kb on - strand, within MPMX20_03972at 4168.505 kb on + strand, within MPMX20_03972at 4168.507 kb on - strand, within MPMX20_03972at 4168.621 kb on + strand, within MPMX20_03972at 4168.629 kb on - strand, within MPMX20_03972at 4168.651 kb on + strand, within MPMX20_03972at 4168.678 kb on - strand, within MPMX20_03972at 4168.685 kb on - strand, within MPMX20_03972at 4168.775 kb on + strand, within MPMX20_03972at 4168.780 kb on + strand, within MPMX20_03972at 4168.780 kb on + strand, within MPMX20_03972at 4168.788 kb on - strand, within MPMX20_03972at 4168.820 kb on + strand, within MPMX20_03972at 4168.863 kb on - strand, within MPMX20_03972at 4168.880 kb on + strand, within MPMX20_03972at 4168.899 kb on + strand, within MPMX20_03972at 4168.899 kb on + strand, within MPMX20_03972at 4168.902 kb on - strand, within MPMX20_03972at 4168.909 kb on - strand, within MPMX20_03972at 4168.941 kb on + strand, within MPMX20_03972at 4168.949 kb on - strand, within MPMX20_03972at 4168.949 kb on - strand, within MPMX20_03972at 4168.949 kb on - strand, within MPMX20_03972at 4168.973 kb on + strandat 4168.990 kb on + strandat 4169.042 kb on + strandat 4169.127 kb on + strandat 4169.135 kb on - strandat 4169.135 kb on - strandat 4169.135 kb on - strandat 4169.137 kb on + strandat 4169.230 kb on + strand, within MPMX20_03973at 4169.254 kb on + strand, within MPMX20_03973at 4169.262 kb on - strand, within MPMX20_03973at 4169.266 kb on - strand, within MPMX20_03973at 4169.278 kb on + strand, within MPMX20_03973at 4169.286 kb on - strand, within MPMX20_03973at 4169.328 kb on + strand, within MPMX20_03973at 4169.338 kb on + strand, within MPMX20_03973at 4169.346 kb on + strand, within MPMX20_03973at 4169.374 kb on + strand, within MPMX20_03973at 4169.383 kb on + strand, within MPMX20_03973at 4169.413 kb on + strandat 4169.418 kb on + strandat 4169.461 kb on + strand, within MPMX20_03974at 4169.525 kb on + strand, within MPMX20_03974at 4169.559 kb on + strand, within MPMX20_03974at 4169.564 kb on + strand, within MPMX20_03974at 4169.584 kb on + strand, within MPMX20_03974at 4169.584 kb on + strand, within MPMX20_03974at 4169.584 kb on + strand, within MPMX20_03974at 4169.603 kb on - strand, within MPMX20_03974at 4169.605 kb on + strand, within MPMX20_03974at 4169.648 kb on + strandat 4169.677 kb on + strandat 4169.677 kb on + strandat 4169.677 kb on + strandat 4169.685 kb on - strandat 4169.685 kb on - strandat 4169.692 kb on + strandat 4169.692 kb on + strandat 4169.710 kb on - strandat 4169.753 kb on + strand, within MPMX20_03975at 4169.781 kb on + strand, within MPMX20_03975at 4169.793 kb on + strand, within MPMX20_03975at 4169.793 kb on + strand, within MPMX20_03975at 4169.801 kb on - strand, within MPMX20_03975at 4169.868 kb on + strand, within MPMX20_03975at 4169.876 kb on - strand, within MPMX20_03975at 4169.876 kb on - strand, within MPMX20_03975at 4169.876 kb on - strand, within MPMX20_03975at 4169.876 kb on - strand, within MPMX20_03975at 4169.878 kb on - strand, within MPMX20_03975at 4169.886 kb on - strand, within MPMX20_03975at 4169.913 kb on + strand, within MPMX20_03975at 4169.913 kb on + strand, within MPMX20_03975at 4169.946 kb on + strand, within MPMX20_03975at 4169.946 kb on + strand, within MPMX20_03975at 4169.954 kb on - strand, within MPMX20_03975at 4169.954 kb on - strand, within MPMX20_03975at 4170.008 kb on + strand, within MPMX20_03975at 4170.009 kb on + strand, within MPMX20_03975at 4170.059 kb on + strandat 4170.059 kb on + strandat 4170.059 kb on + strandat 4170.059 kb on + strandat 4170.109 kb on + strandat 4170.145 kb on + strandat 4170.157 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
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4,168,192 + MPMX20_03972 0.55 +1.1
4,168,192 + MPMX20_03972 0.55 +0.3
4,168,200 - MPMX20_03972 0.55 -0.5
4,168,200 - MPMX20_03972 0.55 +3.1
4,168,200 - MPMX20_03972 0.55 -1.9
4,168,200 - MPMX20_03972 0.55 -0.5
4,168,229 + MPMX20_03972 0.57 -0.2
4,168,237 - MPMX20_03972 0.57 -0.4
4,168,237 - MPMX20_03972 0.57 -0.6
4,168,237 - MPMX20_03972 0.57 +0.5
4,168,249 + MPMX20_03972 0.58 +1.7
4,168,254 + MPMX20_03972 0.58 +1.3
4,168,255 - MPMX20_03972 0.58 -0.6
4,168,288 + MPMX20_03972 0.59 +0.1
4,168,288 + MPMX20_03972 0.59 -0.9
4,168,350 + MPMX20_03972 0.62 -1.7
4,168,350 + MPMX20_03972 0.62 -0.3
4,168,380 + MPMX20_03972 0.63 +0.0
4,168,388 - MPMX20_03972 0.64 +1.2
4,168,439 - MPMX20_03972 0.66 +1.3
4,168,494 + MPMX20_03972 0.69 +0.1
4,168,500 - MPMX20_03972 0.69 +1.3
4,168,505 + MPMX20_03972 0.69 -1.3
4,168,507 - MPMX20_03972 0.69 -2.2
4,168,621 + MPMX20_03972 0.74 +0.4
4,168,629 - MPMX20_03972 0.75 +0.3
4,168,651 + MPMX20_03972 0.76 -2.5
4,168,678 - MPMX20_03972 0.77 +1.6
4,168,685 - MPMX20_03972 0.77 -2.1
4,168,775 + MPMX20_03972 0.81 -0.3
4,168,780 + MPMX20_03972 0.82 -1.5
4,168,780 + MPMX20_03972 0.82 +0.1
4,168,788 - MPMX20_03972 0.82 +0.8
4,168,820 + MPMX20_03972 0.84 -0.0
4,168,863 - MPMX20_03972 0.85 -0.8
4,168,880 + MPMX20_03972 0.86 -0.5
4,168,899 + MPMX20_03972 0.87 -1.5
4,168,899 + MPMX20_03972 0.87 +0.5
4,168,902 - MPMX20_03972 0.87 +1.6
4,168,909 - MPMX20_03972 0.88 -0.7
4,168,941 + MPMX20_03972 0.89 +1.5
4,168,949 - MPMX20_03972 0.89 -0.6
4,168,949 - MPMX20_03972 0.89 +0.4
4,168,949 - MPMX20_03972 0.89 -0.2
4,168,973 + -0.9
4,168,990 + -1.4
4,169,042 + -1.2
4,169,127 + -0.9
4,169,135 - -0.1
4,169,135 - -1.0
4,169,135 - +0.7
4,169,137 + -1.0
4,169,230 + MPMX20_03973 0.18 -0.3
4,169,254 + MPMX20_03973 0.29 -0.6
4,169,262 - MPMX20_03973 0.33 +0.3
4,169,266 - MPMX20_03973 0.35 +6.0
4,169,278 + MPMX20_03973 0.40 -1.5
4,169,286 - MPMX20_03973 0.44 +0.3
4,169,328 + MPMX20_03973 0.63 +1.1
4,169,338 + MPMX20_03973 0.67 -0.7
4,169,346 + MPMX20_03973 0.71 -0.4
4,169,374 + MPMX20_03973 0.83 -1.4
4,169,383 + MPMX20_03973 0.87 -0.9
4,169,413 + -1.1
4,169,418 + -0.4
4,169,461 + MPMX20_03974 0.22 +0.7
4,169,525 + MPMX20_03974 0.50 -1.5
4,169,559 + MPMX20_03974 0.65 +0.4
4,169,564 + MPMX20_03974 0.68 -0.9
4,169,584 + MPMX20_03974 0.76 -1.3
4,169,584 + MPMX20_03974 0.76 -1.0
4,169,584 + MPMX20_03974 0.76 -0.5
4,169,603 - MPMX20_03974 0.85 +0.5
4,169,605 + MPMX20_03974 0.86 +1.3
4,169,648 + -0.2
4,169,677 + +3.3
4,169,677 + -0.6
4,169,677 + +2.2
4,169,685 - -0.3
4,169,685 - +0.7
4,169,692 + +0.3
4,169,692 + -2.5
4,169,710 - -0.3
4,169,753 + MPMX20_03975 0.14 -0.6
4,169,781 + MPMX20_03975 0.22 -1.5
4,169,793 + MPMX20_03975 0.26 -1.1
4,169,793 + MPMX20_03975 0.26 -0.6
4,169,801 - MPMX20_03975 0.28 -0.0
4,169,868 + MPMX20_03975 0.48 -0.1
4,169,876 - MPMX20_03975 0.50 +0.1
4,169,876 - MPMX20_03975 0.50 +0.1
4,169,876 - MPMX20_03975 0.50 -0.8
4,169,876 - MPMX20_03975 0.50 -1.5
4,169,878 - MPMX20_03975 0.51 -0.0
4,169,886 - MPMX20_03975 0.53 -0.7
4,169,913 + MPMX20_03975 0.61 -0.4
4,169,913 + MPMX20_03975 0.61 -0.5
4,169,946 + MPMX20_03975 0.71 -0.0
4,169,946 + MPMX20_03975 0.71 +1.3
4,169,954 - MPMX20_03975 0.73 +0.7
4,169,954 - MPMX20_03975 0.73 -0.7
4,170,008 + MPMX20_03975 0.89 -1.1
4,170,009 + MPMX20_03975 0.90 -0.7
4,170,059 + -0.7
4,170,059 + -0.3
4,170,059 + -0.0
4,170,059 + -1.3
4,170,109 + -0.8
4,170,145 + -0.2
4,170,157 + -1.5

Or see this region's nucleotide sequence