Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03790 and MPMX20_03791 overlap by 4 nucleotides MPMX20_03791 and MPMX20_03792 are separated by 78 nucleotides MPMX20_03792 and MPMX20_03793 are separated by 12 nucleotides
MPMX20_03790: MPMX20_03790 - p-cumate 2,3-dioxygenase system, ferredoxin--NAD(+) reductase component, at 3,995,439 to 3,996,626
_03790
MPMX20_03791: MPMX20_03791 - hypothetical protein, at 3,996,623 to 3,997,549
_03791
MPMX20_03792: MPMX20_03792 - Pca regulon regulatory protein, at 3,997,628 to 3,998,416
_03792
MPMX20_03793: MPMX20_03793 - Pyridoxal 4-dehydrogenase, at 3,998,429 to 3,999,178
_03793
Position (kb)
3996
3997
3998 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 3995.623 kb on - strand, within MPMX20_03790 at 3995.633 kb on + strand, within MPMX20_03790 at 3995.664 kb on + strand, within MPMX20_03790 at 3995.734 kb on - strand, within MPMX20_03790 at 3995.769 kb on - strand, within MPMX20_03790 at 3995.780 kb on + strand, within MPMX20_03790 at 3995.780 kb on + strand, within MPMX20_03790 at 3995.780 kb on + strand, within MPMX20_03790 at 3995.780 kb on + strand, within MPMX20_03790 at 3995.882 kb on - strand, within MPMX20_03790 at 3995.909 kb on + strand, within MPMX20_03790 at 3995.993 kb on - strand, within MPMX20_03790 at 3995.997 kb on + strand, within MPMX20_03790 at 3995.997 kb on + strand, within MPMX20_03790 at 3996.033 kb on - strand, within MPMX20_03790 at 3996.035 kb on + strand, within MPMX20_03790 at 3996.068 kb on + strand, within MPMX20_03790 at 3996.068 kb on + strand, within MPMX20_03790 at 3996.068 kb on + strand, within MPMX20_03790 at 3996.076 kb on - strand, within MPMX20_03790 at 3996.076 kb on - strand, within MPMX20_03790 at 3996.085 kb on + strand, within MPMX20_03790 at 3996.103 kb on - strand, within MPMX20_03790 at 3996.114 kb on - strand, within MPMX20_03790 at 3996.156 kb on + strand, within MPMX20_03790 at 3996.156 kb on + strand, within MPMX20_03790 at 3996.164 kb on - strand, within MPMX20_03790 at 3996.164 kb on - strand, within MPMX20_03790 at 3996.164 kb on - strand, within MPMX20_03790 at 3996.185 kb on + strand, within MPMX20_03790 at 3996.248 kb on + strand, within MPMX20_03790 at 3996.250 kb on + strand, within MPMX20_03790 at 3996.250 kb on + strand, within MPMX20_03790 at 3996.250 kb on + strand, within MPMX20_03790 at 3996.250 kb on + strand, within MPMX20_03790 at 3996.250 kb on + strand, within MPMX20_03790 at 3996.256 kb on - strand, within MPMX20_03790 at 3996.256 kb on - strand, within MPMX20_03790 at 3996.257 kb on - strand, within MPMX20_03790 at 3996.258 kb on - strand, within MPMX20_03790 at 3996.258 kb on - strand, within MPMX20_03790 at 3996.258 kb on - strand, within MPMX20_03790 at 3996.258 kb on - strand, within MPMX20_03790 at 3996.258 kb on - strand, within MPMX20_03790 at 3996.258 kb on - strand, within MPMX20_03790 at 3996.258 kb on - strand, within MPMX20_03790 at 3996.264 kb on - strand, within MPMX20_03790 at 3996.361 kb on + strand, within MPMX20_03790 at 3996.393 kb on + strand, within MPMX20_03790 at 3996.405 kb on - strand, within MPMX20_03790 at 3996.481 kb on + strand, within MPMX20_03790 at 3996.481 kb on + strand, within MPMX20_03790 at 3996.481 kb on + strand, within MPMX20_03790 at 3996.481 kb on + strand, within MPMX20_03790 at 3996.481 kb on + strand, within MPMX20_03790 at 3996.489 kb on - strand, within MPMX20_03790 at 3996.489 kb on - strand, within MPMX20_03790 at 3996.489 kb on - strand, within MPMX20_03790 at 3996.505 kb on + strand, within MPMX20_03790 at 3996.628 kb on - strand at 3996.667 kb on - strand at 3996.669 kb on + strand at 3996.679 kb on + strand at 3996.712 kb on + strand at 3996.712 kb on + strand at 3996.720 kb on - strand, within MPMX20_03791 at 3996.772 kb on - strand, within MPMX20_03791 at 3996.923 kb on + strand, within MPMX20_03791 at 3996.923 kb on + strand, within MPMX20_03791 at 3996.923 kb on + strand, within MPMX20_03791 at 3997.045 kb on + strand, within MPMX20_03791 at 3997.053 kb on - strand, within MPMX20_03791 at 3997.135 kb on + strand, within MPMX20_03791 at 3997.135 kb on + strand, within MPMX20_03791 at 3997.135 kb on + strand, within MPMX20_03791 at 3997.143 kb on - strand, within MPMX20_03791 at 3997.185 kb on + strand, within MPMX20_03791 at 3997.200 kb on - strand, within MPMX20_03791 at 3997.204 kb on + strand, within MPMX20_03791 at 3997.212 kb on - strand, within MPMX20_03791 at 3997.228 kb on + strand, within MPMX20_03791 at 3997.230 kb on + strand, within MPMX20_03791 at 3997.236 kb on - strand, within MPMX20_03791 at 3997.236 kb on - strand, within MPMX20_03791 at 3997.236 kb on - strand, within MPMX20_03791 at 3997.236 kb on - strand, within MPMX20_03791 at 3997.236 kb on - strand, within MPMX20_03791 at 3997.236 kb on - strand, within MPMX20_03791 at 3997.320 kb on - strand, within MPMX20_03791 at 3997.338 kb on + strand, within MPMX20_03791 at 3997.382 kb on + strand, within MPMX20_03791 at 3997.387 kb on + strand, within MPMX20_03791 at 3997.387 kb on + strand, within MPMX20_03791 at 3997.392 kb on + strand, within MPMX20_03791 at 3997.427 kb on + strand, within MPMX20_03791 at 3997.427 kb on + strand, within MPMX20_03791 at 3997.432 kb on + strand, within MPMX20_03791 at 3997.432 kb on + strand, within MPMX20_03791 at 3997.435 kb on - strand, within MPMX20_03791 at 3997.435 kb on - strand, within MPMX20_03791 at 3997.437 kb on + strand, within MPMX20_03791 at 3997.506 kb on - strand at 3997.562 kb on + strand at 3997.567 kb on + strand at 3997.576 kb on - strand at 3997.726 kb on + strand, within MPMX20_03792 at 3997.738 kb on + strand, within MPMX20_03792 at 3997.775 kb on + strand, within MPMX20_03792 at 3997.845 kb on + strand, within MPMX20_03792 at 3997.897 kb on - strand, within MPMX20_03792 at 3997.902 kb on - strand, within MPMX20_03792 at 3997.907 kb on + strand, within MPMX20_03792 at 3997.986 kb on + strand, within MPMX20_03792 at 3997.991 kb on + strand, within MPMX20_03792 at 3998.021 kb on - strand, within MPMX20_03792 at 3998.043 kb on + strand, within MPMX20_03792 at 3998.058 kb on + strand, within MPMX20_03792 at 3998.107 kb on + strand, within MPMX20_03792 at 3998.130 kb on - strand, within MPMX20_03792 at 3998.214 kb on + strand, within MPMX20_03792 at 3998.222 kb on - strand, within MPMX20_03792 at 3998.301 kb on + strand, within MPMX20_03792 at 3998.301 kb on + strand, within MPMX20_03792 at 3998.304 kb on - strand, within MPMX20_03792 at 3998.311 kb on + strand, within MPMX20_03792 at 3998.334 kb on - strand, within MPMX20_03792 at 3998.359 kb on + strand at 3998.383 kb on + strand at 3998.383 kb on + strand at 3998.390 kb on + strand at 3998.507 kb on - strand, within MPMX20_03793
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027 remove 3,995,623 - MPMX20_03790 0.15 +1.5 3,995,633 + MPMX20_03790 0.16 +1.8 3,995,664 + MPMX20_03790 0.19 -0.7 3,995,734 - MPMX20_03790 0.25 +0.4 3,995,769 - MPMX20_03790 0.28 +1.2 3,995,780 + MPMX20_03790 0.29 -1.4 3,995,780 + MPMX20_03790 0.29 -0.0 3,995,780 + MPMX20_03790 0.29 +1.1 3,995,780 + MPMX20_03790 0.29 -0.2 3,995,882 - MPMX20_03790 0.37 -0.9 3,995,909 + MPMX20_03790 0.40 +0.7 3,995,993 - MPMX20_03790 0.47 -1.1 3,995,997 + MPMX20_03790 0.47 -0.7 3,995,997 + MPMX20_03790 0.47 -0.7 3,996,033 - MPMX20_03790 0.50 +0.5 3,996,035 + MPMX20_03790 0.50 -0.7 3,996,068 + MPMX20_03790 0.53 +0.1 3,996,068 + MPMX20_03790 0.53 +0.9 3,996,068 + MPMX20_03790 0.53 -1.8 3,996,076 - MPMX20_03790 0.54 -0.6 3,996,076 - MPMX20_03790 0.54 +0.1 3,996,085 + MPMX20_03790 0.54 -0.4 3,996,103 - MPMX20_03790 0.56 +0.0 3,996,114 - MPMX20_03790 0.57 -0.2 3,996,156 + MPMX20_03790 0.60 -0.1 3,996,156 + MPMX20_03790 0.60 -1.9 3,996,164 - MPMX20_03790 0.61 +1.4 3,996,164 - MPMX20_03790 0.61 +1.1 3,996,164 - MPMX20_03790 0.61 +2.1 3,996,185 + MPMX20_03790 0.63 -0.6 3,996,248 + MPMX20_03790 0.68 -0.1 3,996,250 + MPMX20_03790 0.68 -0.2 3,996,250 + MPMX20_03790 0.68 +0.3 3,996,250 + MPMX20_03790 0.68 -0.3 3,996,250 + MPMX20_03790 0.68 -1.4 3,996,250 + MPMX20_03790 0.68 -0.3 3,996,256 - MPMX20_03790 0.69 -0.0 3,996,256 - MPMX20_03790 0.69 -1.3 3,996,257 - MPMX20_03790 0.69 -0.7 3,996,258 - MPMX20_03790 0.69 -0.7 3,996,258 - MPMX20_03790 0.69 -0.6 3,996,258 - MPMX20_03790 0.69 +0.1 3,996,258 - MPMX20_03790 0.69 -0.2 3,996,258 - MPMX20_03790 0.69 -1.0 3,996,258 - MPMX20_03790 0.69 -0.1 3,996,258 - MPMX20_03790 0.69 +0.6 3,996,264 - MPMX20_03790 0.69 +0.3 3,996,361 + MPMX20_03790 0.78 -0.7 3,996,393 + MPMX20_03790 0.80 -0.8 3,996,405 - MPMX20_03790 0.81 +0.8 3,996,481 + MPMX20_03790 0.88 -0.5 3,996,481 + MPMX20_03790 0.88 -0.4 3,996,481 + MPMX20_03790 0.88 -1.3 3,996,481 + MPMX20_03790 0.88 -0.6 3,996,481 + MPMX20_03790 0.88 -0.2 3,996,489 - MPMX20_03790 0.88 -1.9 3,996,489 - MPMX20_03790 0.88 -1.7 3,996,489 - MPMX20_03790 0.88 -1.7 3,996,505 + MPMX20_03790 0.90 -1.2 3,996,628 - -0.2 3,996,667 - +9.8 3,996,669 + -2.0 3,996,679 + +0.1 3,996,712 + -2.4 3,996,712 + +1.6 3,996,720 - MPMX20_03791 0.10 +0.2 3,996,772 - MPMX20_03791 0.16 +3.9 3,996,923 + MPMX20_03791 0.32 +0.4 3,996,923 + MPMX20_03791 0.32 -0.4 3,996,923 + MPMX20_03791 0.32 -0.6 3,997,045 + MPMX20_03791 0.46 +0.2 3,997,053 - MPMX20_03791 0.46 -0.0 3,997,135 + MPMX20_03791 0.55 -0.5 3,997,135 + MPMX20_03791 0.55 +3.4 3,997,135 + MPMX20_03791 0.55 +1.0 3,997,143 - MPMX20_03791 0.56 +0.5 3,997,185 + MPMX20_03791 0.61 +0.7 3,997,200 - MPMX20_03791 0.62 +1.4 3,997,204 + MPMX20_03791 0.63 -0.5 3,997,212 - MPMX20_03791 0.64 +2.4 3,997,228 + MPMX20_03791 0.65 +0.1 3,997,230 + MPMX20_03791 0.65 -2.1 3,997,236 - MPMX20_03791 0.66 -0.9 3,997,236 - MPMX20_03791 0.66 -0.8 3,997,236 - MPMX20_03791 0.66 -0.3 3,997,236 - MPMX20_03791 0.66 +0.9 3,997,236 - MPMX20_03791 0.66 -0.8 3,997,236 - MPMX20_03791 0.66 -1.2 3,997,320 - MPMX20_03791 0.75 +0.4 3,997,338 + MPMX20_03791 0.77 -0.2 3,997,382 + MPMX20_03791 0.82 +0.3 3,997,387 + MPMX20_03791 0.82 -0.9 3,997,387 + MPMX20_03791 0.82 -0.6 3,997,392 + MPMX20_03791 0.83 +4.6 3,997,427 + MPMX20_03791 0.87 +0.0 3,997,427 + MPMX20_03791 0.87 -0.5 3,997,432 + MPMX20_03791 0.87 +1.1 3,997,432 + MPMX20_03791 0.87 +3.0 3,997,435 - MPMX20_03791 0.88 -1.5 3,997,435 - MPMX20_03791 0.88 +0.8 3,997,437 + MPMX20_03791 0.88 -2.4 3,997,506 - -0.7 3,997,562 + +0.6 3,997,567 + -1.2 3,997,576 - -0.8 3,997,726 + MPMX20_03792 0.12 -2.0 3,997,738 + MPMX20_03792 0.14 -0.7 3,997,775 + MPMX20_03792 0.19 +2.4 3,997,845 + MPMX20_03792 0.28 -0.1 3,997,897 - MPMX20_03792 0.34 -1.6 3,997,902 - MPMX20_03792 0.35 +0.2 3,997,907 + MPMX20_03792 0.35 +0.5 3,997,986 + MPMX20_03792 0.45 +0.1 3,997,991 + MPMX20_03792 0.46 -0.2 3,998,021 - MPMX20_03792 0.50 +0.4 3,998,043 + MPMX20_03792 0.53 +0.3 3,998,058 + MPMX20_03792 0.54 +1.3 3,998,107 + MPMX20_03792 0.61 -0.6 3,998,130 - MPMX20_03792 0.64 +0.5 3,998,214 + MPMX20_03792 0.74 -0.2 3,998,222 - MPMX20_03792 0.75 -0.5 3,998,301 + MPMX20_03792 0.85 -0.4 3,998,301 + MPMX20_03792 0.85 -1.2 3,998,304 - MPMX20_03792 0.86 +1.8 3,998,311 + MPMX20_03792 0.87 -0.4 3,998,334 - MPMX20_03792 0.89 +0.3 3,998,359 + -1.4 3,998,383 + -0.1 3,998,383 + +0.3 3,998,390 + +0.4 3,998,507 - MPMX20_03793 0.10 +0.4
Or see this region's nucleotide sequence