Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03791

Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03790 and MPMX20_03791 overlap by 4 nucleotidesMPMX20_03791 and MPMX20_03792 are separated by 78 nucleotidesMPMX20_03792 and MPMX20_03793 are separated by 12 nucleotides MPMX20_03790: MPMX20_03790 - p-cumate 2,3-dioxygenase system, ferredoxin--NAD(+) reductase component, at 3,995,439 to 3,996,626 _03790 MPMX20_03791: MPMX20_03791 - hypothetical protein, at 3,996,623 to 3,997,549 _03791 MPMX20_03792: MPMX20_03792 - Pca regulon regulatory protein, at 3,997,628 to 3,998,416 _03792 MPMX20_03793: MPMX20_03793 - Pyridoxal 4-dehydrogenase, at 3,998,429 to 3,999,178 _03793 Position (kb) 3996 3997 3998Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10at 3995.623 kb on - strand, within MPMX20_03790at 3995.633 kb on + strand, within MPMX20_03790at 3995.664 kb on + strand, within MPMX20_03790at 3995.734 kb on - strand, within MPMX20_03790at 3995.769 kb on - strand, within MPMX20_03790at 3995.780 kb on + strand, within MPMX20_03790at 3995.780 kb on + strand, within MPMX20_03790at 3995.780 kb on + strand, within MPMX20_03790at 3995.780 kb on + strand, within MPMX20_03790at 3995.882 kb on - strand, within MPMX20_03790at 3995.909 kb on + strand, within MPMX20_03790at 3995.993 kb on - strand, within MPMX20_03790at 3995.997 kb on + strand, within MPMX20_03790at 3995.997 kb on + strand, within MPMX20_03790at 3996.033 kb on - strand, within MPMX20_03790at 3996.035 kb on + strand, within MPMX20_03790at 3996.068 kb on + strand, within MPMX20_03790at 3996.068 kb on + strand, within MPMX20_03790at 3996.068 kb on + strand, within MPMX20_03790at 3996.076 kb on - strand, within MPMX20_03790at 3996.076 kb on - strand, within MPMX20_03790at 3996.085 kb on + strand, within MPMX20_03790at 3996.103 kb on - strand, within MPMX20_03790at 3996.114 kb on - strand, within MPMX20_03790at 3996.156 kb on + strand, within MPMX20_03790at 3996.156 kb on + strand, within MPMX20_03790at 3996.164 kb on - strand, within MPMX20_03790at 3996.164 kb on - strand, within MPMX20_03790at 3996.164 kb on - strand, within MPMX20_03790at 3996.185 kb on + strand, within MPMX20_03790at 3996.248 kb on + strand, within MPMX20_03790at 3996.250 kb on + strand, within MPMX20_03790at 3996.250 kb on + strand, within MPMX20_03790at 3996.250 kb on + strand, within MPMX20_03790at 3996.250 kb on + strand, within MPMX20_03790at 3996.250 kb on + strand, within MPMX20_03790at 3996.256 kb on - strand, within MPMX20_03790at 3996.256 kb on - strand, within MPMX20_03790at 3996.257 kb on - strand, within MPMX20_03790at 3996.258 kb on - strand, within MPMX20_03790at 3996.258 kb on - strand, within MPMX20_03790at 3996.258 kb on - strand, within MPMX20_03790at 3996.258 kb on - strand, within MPMX20_03790at 3996.258 kb on - strand, within MPMX20_03790at 3996.258 kb on - strand, within MPMX20_03790at 3996.258 kb on - strand, within MPMX20_03790at 3996.264 kb on - strand, within MPMX20_03790at 3996.361 kb on + strand, within MPMX20_03790at 3996.393 kb on + strand, within MPMX20_03790at 3996.405 kb on - strand, within MPMX20_03790at 3996.481 kb on + strand, within MPMX20_03790at 3996.481 kb on + strand, within MPMX20_03790at 3996.481 kb on + strand, within MPMX20_03790at 3996.481 kb on + strand, within MPMX20_03790at 3996.481 kb on + strand, within MPMX20_03790at 3996.489 kb on - strand, within MPMX20_03790at 3996.489 kb on - strand, within MPMX20_03790at 3996.489 kb on - strand, within MPMX20_03790at 3996.505 kb on + strand, within MPMX20_03790at 3996.628 kb on - strandat 3996.667 kb on - strandat 3996.669 kb on + strandat 3996.679 kb on + strandat 3996.712 kb on + strandat 3996.712 kb on + strandat 3996.720 kb on - strand, within MPMX20_03791at 3996.772 kb on - strand, within MPMX20_03791at 3996.923 kb on + strand, within MPMX20_03791at 3996.923 kb on + strand, within MPMX20_03791at 3996.923 kb on + strand, within MPMX20_03791at 3997.045 kb on + strand, within MPMX20_03791at 3997.053 kb on - strand, within MPMX20_03791at 3997.135 kb on + strand, within MPMX20_03791at 3997.135 kb on + strand, within MPMX20_03791at 3997.135 kb on + strand, within MPMX20_03791at 3997.143 kb on - strand, within MPMX20_03791at 3997.185 kb on + strand, within MPMX20_03791at 3997.200 kb on - strand, within MPMX20_03791at 3997.204 kb on + strand, within MPMX20_03791at 3997.212 kb on - strand, within MPMX20_03791at 3997.228 kb on + strand, within MPMX20_03791at 3997.230 kb on + strand, within MPMX20_03791at 3997.236 kb on - strand, within MPMX20_03791at 3997.236 kb on - strand, within MPMX20_03791at 3997.236 kb on - strand, within MPMX20_03791at 3997.236 kb on - strand, within MPMX20_03791at 3997.236 kb on - strand, within MPMX20_03791at 3997.236 kb on - strand, within MPMX20_03791at 3997.320 kb on - strand, within MPMX20_03791at 3997.338 kb on + strand, within MPMX20_03791at 3997.382 kb on + strand, within MPMX20_03791at 3997.387 kb on + strand, within MPMX20_03791at 3997.387 kb on + strand, within MPMX20_03791at 3997.392 kb on + strand, within MPMX20_03791at 3997.427 kb on + strand, within MPMX20_03791at 3997.427 kb on + strand, within MPMX20_03791at 3997.432 kb on + strand, within MPMX20_03791at 3997.432 kb on + strand, within MPMX20_03791at 3997.435 kb on - strand, within MPMX20_03791at 3997.435 kb on - strand, within MPMX20_03791at 3997.437 kb on + strand, within MPMX20_03791at 3997.506 kb on - strandat 3997.562 kb on + strandat 3997.567 kb on + strandat 3997.576 kb on - strandat 3997.726 kb on + strand, within MPMX20_03792at 3997.738 kb on + strand, within MPMX20_03792at 3997.775 kb on + strand, within MPMX20_03792at 3997.845 kb on + strand, within MPMX20_03792at 3997.897 kb on - strand, within MPMX20_03792at 3997.902 kb on - strand, within MPMX20_03792at 3997.907 kb on + strand, within MPMX20_03792at 3997.986 kb on + strand, within MPMX20_03792at 3997.991 kb on + strand, within MPMX20_03792at 3998.021 kb on - strand, within MPMX20_03792at 3998.043 kb on + strand, within MPMX20_03792at 3998.058 kb on + strand, within MPMX20_03792at 3998.107 kb on + strand, within MPMX20_03792at 3998.130 kb on - strand, within MPMX20_03792at 3998.214 kb on + strand, within MPMX20_03792at 3998.222 kb on - strand, within MPMX20_03792at 3998.301 kb on + strand, within MPMX20_03792at 3998.301 kb on + strand, within MPMX20_03792at 3998.304 kb on - strand, within MPMX20_03792at 3998.311 kb on + strand, within MPMX20_03792at 3998.334 kb on - strand, within MPMX20_03792at 3998.359 kb on + strandat 3998.383 kb on + strandat 3998.383 kb on + strandat 3998.390 kb on + strandat 3998.507 kb on - strand, within MPMX20_03793

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
remove
3,995,623 - MPMX20_03790 0.15 +1.5
3,995,633 + MPMX20_03790 0.16 +1.8
3,995,664 + MPMX20_03790 0.19 -0.7
3,995,734 - MPMX20_03790 0.25 +0.4
3,995,769 - MPMX20_03790 0.28 +1.2
3,995,780 + MPMX20_03790 0.29 -1.4
3,995,780 + MPMX20_03790 0.29 -0.0
3,995,780 + MPMX20_03790 0.29 +1.1
3,995,780 + MPMX20_03790 0.29 -0.2
3,995,882 - MPMX20_03790 0.37 -0.9
3,995,909 + MPMX20_03790 0.40 +0.7
3,995,993 - MPMX20_03790 0.47 -1.1
3,995,997 + MPMX20_03790 0.47 -0.7
3,995,997 + MPMX20_03790 0.47 -0.7
3,996,033 - MPMX20_03790 0.50 +0.5
3,996,035 + MPMX20_03790 0.50 -0.7
3,996,068 + MPMX20_03790 0.53 +0.1
3,996,068 + MPMX20_03790 0.53 +0.9
3,996,068 + MPMX20_03790 0.53 -1.8
3,996,076 - MPMX20_03790 0.54 -0.6
3,996,076 - MPMX20_03790 0.54 +0.1
3,996,085 + MPMX20_03790 0.54 -0.4
3,996,103 - MPMX20_03790 0.56 +0.0
3,996,114 - MPMX20_03790 0.57 -0.2
3,996,156 + MPMX20_03790 0.60 -0.1
3,996,156 + MPMX20_03790 0.60 -1.9
3,996,164 - MPMX20_03790 0.61 +1.4
3,996,164 - MPMX20_03790 0.61 +1.1
3,996,164 - MPMX20_03790 0.61 +2.1
3,996,185 + MPMX20_03790 0.63 -0.6
3,996,248 + MPMX20_03790 0.68 -0.1
3,996,250 + MPMX20_03790 0.68 -0.2
3,996,250 + MPMX20_03790 0.68 +0.3
3,996,250 + MPMX20_03790 0.68 -0.3
3,996,250 + MPMX20_03790 0.68 -1.4
3,996,250 + MPMX20_03790 0.68 -0.3
3,996,256 - MPMX20_03790 0.69 -0.0
3,996,256 - MPMX20_03790 0.69 -1.3
3,996,257 - MPMX20_03790 0.69 -0.7
3,996,258 - MPMX20_03790 0.69 -0.7
3,996,258 - MPMX20_03790 0.69 -0.6
3,996,258 - MPMX20_03790 0.69 +0.1
3,996,258 - MPMX20_03790 0.69 -0.2
3,996,258 - MPMX20_03790 0.69 -1.0
3,996,258 - MPMX20_03790 0.69 -0.1
3,996,258 - MPMX20_03790 0.69 +0.6
3,996,264 - MPMX20_03790 0.69 +0.3
3,996,361 + MPMX20_03790 0.78 -0.7
3,996,393 + MPMX20_03790 0.80 -0.8
3,996,405 - MPMX20_03790 0.81 +0.8
3,996,481 + MPMX20_03790 0.88 -0.5
3,996,481 + MPMX20_03790 0.88 -0.4
3,996,481 + MPMX20_03790 0.88 -1.3
3,996,481 + MPMX20_03790 0.88 -0.6
3,996,481 + MPMX20_03790 0.88 -0.2
3,996,489 - MPMX20_03790 0.88 -1.9
3,996,489 - MPMX20_03790 0.88 -1.7
3,996,489 - MPMX20_03790 0.88 -1.7
3,996,505 + MPMX20_03790 0.90 -1.2
3,996,628 - -0.2
3,996,667 - +9.8
3,996,669 + -2.0
3,996,679 + +0.1
3,996,712 + -2.4
3,996,712 + +1.6
3,996,720 - MPMX20_03791 0.10 +0.2
3,996,772 - MPMX20_03791 0.16 +3.9
3,996,923 + MPMX20_03791 0.32 +0.4
3,996,923 + MPMX20_03791 0.32 -0.4
3,996,923 + MPMX20_03791 0.32 -0.6
3,997,045 + MPMX20_03791 0.46 +0.2
3,997,053 - MPMX20_03791 0.46 -0.0
3,997,135 + MPMX20_03791 0.55 -0.5
3,997,135 + MPMX20_03791 0.55 +3.4
3,997,135 + MPMX20_03791 0.55 +1.0
3,997,143 - MPMX20_03791 0.56 +0.5
3,997,185 + MPMX20_03791 0.61 +0.7
3,997,200 - MPMX20_03791 0.62 +1.4
3,997,204 + MPMX20_03791 0.63 -0.5
3,997,212 - MPMX20_03791 0.64 +2.4
3,997,228 + MPMX20_03791 0.65 +0.1
3,997,230 + MPMX20_03791 0.65 -2.1
3,997,236 - MPMX20_03791 0.66 -0.9
3,997,236 - MPMX20_03791 0.66 -0.8
3,997,236 - MPMX20_03791 0.66 -0.3
3,997,236 - MPMX20_03791 0.66 +0.9
3,997,236 - MPMX20_03791 0.66 -0.8
3,997,236 - MPMX20_03791 0.66 -1.2
3,997,320 - MPMX20_03791 0.75 +0.4
3,997,338 + MPMX20_03791 0.77 -0.2
3,997,382 + MPMX20_03791 0.82 +0.3
3,997,387 + MPMX20_03791 0.82 -0.9
3,997,387 + MPMX20_03791 0.82 -0.6
3,997,392 + MPMX20_03791 0.83 +4.6
3,997,427 + MPMX20_03791 0.87 +0.0
3,997,427 + MPMX20_03791 0.87 -0.5
3,997,432 + MPMX20_03791 0.87 +1.1
3,997,432 + MPMX20_03791 0.87 +3.0
3,997,435 - MPMX20_03791 0.88 -1.5
3,997,435 - MPMX20_03791 0.88 +0.8
3,997,437 + MPMX20_03791 0.88 -2.4
3,997,506 - -0.7
3,997,562 + +0.6
3,997,567 + -1.2
3,997,576 - -0.8
3,997,726 + MPMX20_03792 0.12 -2.0
3,997,738 + MPMX20_03792 0.14 -0.7
3,997,775 + MPMX20_03792 0.19 +2.4
3,997,845 + MPMX20_03792 0.28 -0.1
3,997,897 - MPMX20_03792 0.34 -1.6
3,997,902 - MPMX20_03792 0.35 +0.2
3,997,907 + MPMX20_03792 0.35 +0.5
3,997,986 + MPMX20_03792 0.45 +0.1
3,997,991 + MPMX20_03792 0.46 -0.2
3,998,021 - MPMX20_03792 0.50 +0.4
3,998,043 + MPMX20_03792 0.53 +0.3
3,998,058 + MPMX20_03792 0.54 +1.3
3,998,107 + MPMX20_03792 0.61 -0.6
3,998,130 - MPMX20_03792 0.64 +0.5
3,998,214 + MPMX20_03792 0.74 -0.2
3,998,222 - MPMX20_03792 0.75 -0.5
3,998,301 + MPMX20_03792 0.85 -0.4
3,998,301 + MPMX20_03792 0.85 -1.2
3,998,304 - MPMX20_03792 0.86 +1.8
3,998,311 + MPMX20_03792 0.87 -0.4
3,998,334 - MPMX20_03792 0.89 +0.3
3,998,359 + -1.4
3,998,383 + -0.1
3,998,383 + +0.3
3,998,390 + +0.4
3,998,507 - MPMX20_03793 0.10 +0.4

Or see this region's nucleotide sequence