Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03695

Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03694 and MPMX20_03695 are separated by 128 nucleotidesMPMX20_03695 and MPMX20_03696 are separated by 132 nucleotides MPMX20_03694: MPMX20_03694 - DNA mismatch repair protein MutH, at 3,894,057 to 3,894,749 _03694 MPMX20_03695: MPMX20_03695 - putative lipoprotein YgdR, at 3,894,878 to 3,895,096 _03695 MPMX20_03696: MPMX20_03696 - Protein tas, at 3,895,229 to 3,896,269 _03696 Position (kb) 3894 3895 3896Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3893.983 kb on - strandat 3894.073 kb on - strandat 3894.231 kb on - strand, within MPMX20_03694at 3894.232 kb on - strand, within MPMX20_03694at 3894.242 kb on - strand, within MPMX20_03694at 3894.248 kb on + strand, within MPMX20_03694at 3894.256 kb on - strand, within MPMX20_03694at 3894.287 kb on + strand, within MPMX20_03694at 3894.310 kb on + strand, within MPMX20_03694at 3894.449 kb on - strand, within MPMX20_03694at 3894.482 kb on + strand, within MPMX20_03694at 3894.490 kb on - strand, within MPMX20_03694at 3894.490 kb on - strand, within MPMX20_03694at 3894.527 kb on - strand, within MPMX20_03694at 3894.534 kb on + strand, within MPMX20_03694at 3894.547 kb on + strand, within MPMX20_03694at 3894.559 kb on + strand, within MPMX20_03694at 3894.571 kb on - strand, within MPMX20_03694at 3894.834 kb on + strandat 3894.834 kb on + strandat 3894.842 kb on - strandat 3894.846 kb on + strandat 3894.854 kb on - strandat 3894.857 kb on + strandat 3894.857 kb on + strandat 3894.857 kb on + strandat 3894.862 kb on + strandat 3894.865 kb on - strandat 3894.911 kb on + strand, within MPMX20_03695at 3894.919 kb on - strand, within MPMX20_03695at 3894.932 kb on + strand, within MPMX20_03695at 3894.934 kb on - strand, within MPMX20_03695at 3894.950 kb on - strand, within MPMX20_03695at 3895.001 kb on + strand, within MPMX20_03695at 3895.011 kb on + strand, within MPMX20_03695at 3895.019 kb on - strand, within MPMX20_03695at 3895.019 kb on - strand, within MPMX20_03695at 3895.106 kb on + strandat 3895.106 kb on + strandat 3895.114 kb on - strandat 3895.114 kb on - strandat 3895.202 kb on + strandat 3895.208 kb on - strandat 3895.208 kb on - strandat 3895.208 kb on - strandat 3895.247 kb on + strandat 3895.254 kb on + strandat 3895.255 kb on - strandat 3895.255 kb on - strandat 3895.255 kb on - strandat 3895.257 kb on + strandat 3895.277 kb on + strandat 3895.324 kb on - strandat 3895.356 kb on + strand, within MPMX20_03696at 3895.381 kb on + strand, within MPMX20_03696at 3895.381 kb on + strand, within MPMX20_03696at 3895.381 kb on + strand, within MPMX20_03696at 3895.389 kb on - strand, within MPMX20_03696at 3895.389 kb on - strand, within MPMX20_03696at 3895.389 kb on - strand, within MPMX20_03696at 3895.502 kb on + strand, within MPMX20_03696at 3895.510 kb on - strand, within MPMX20_03696at 3895.527 kb on + strand, within MPMX20_03696at 3895.560 kb on + strand, within MPMX20_03696at 3895.563 kb on - strand, within MPMX20_03696at 3895.568 kb on - strand, within MPMX20_03696at 3895.579 kb on + strand, within MPMX20_03696at 3895.641 kb on - strand, within MPMX20_03696at 3895.655 kb on - strand, within MPMX20_03696at 3895.697 kb on - strand, within MPMX20_03696at 3895.802 kb on - strand, within MPMX20_03696at 3895.802 kb on - strand, within MPMX20_03696at 3895.908 kb on + strand, within MPMX20_03696at 3895.916 kb on - strand, within MPMX20_03696at 3895.956 kb on + strand, within MPMX20_03696at 3895.956 kb on + strand, within MPMX20_03696at 3895.979 kb on - strand, within MPMX20_03696at 3895.979 kb on - strand, within MPMX20_03696at 3896.083 kb on + strand, within MPMX20_03696

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
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3,893,983 - +0.4
3,894,073 - +2.8
3,894,231 - MPMX20_03694 0.25 -0.4
3,894,232 - MPMX20_03694 0.25 -0.6
3,894,242 - MPMX20_03694 0.27 -0.3
3,894,248 + MPMX20_03694 0.28 +0.3
3,894,256 - MPMX20_03694 0.29 -1.2
3,894,287 + MPMX20_03694 0.33 +0.3
3,894,310 + MPMX20_03694 0.37 +0.1
3,894,449 - MPMX20_03694 0.57 +0.1
3,894,482 + MPMX20_03694 0.61 -0.1
3,894,490 - MPMX20_03694 0.62 +0.7
3,894,490 - MPMX20_03694 0.62 -0.9
3,894,527 - MPMX20_03694 0.68 -1.3
3,894,534 + MPMX20_03694 0.69 +1.0
3,894,547 + MPMX20_03694 0.71 +0.8
3,894,559 + MPMX20_03694 0.72 +1.4
3,894,571 - MPMX20_03694 0.74 -0.7
3,894,834 + +0.8
3,894,834 + +0.2
3,894,842 - -2.0
3,894,846 + -0.1
3,894,854 - +0.1
3,894,857 + -1.1
3,894,857 + -1.1
3,894,857 + -1.3
3,894,862 + +0.4
3,894,865 - +0.8
3,894,911 + MPMX20_03695 0.15 +2.7
3,894,919 - MPMX20_03695 0.19 +0.5
3,894,932 + MPMX20_03695 0.25 +0.2
3,894,934 - MPMX20_03695 0.26 +0.8
3,894,950 - MPMX20_03695 0.33 -1.3
3,895,001 + MPMX20_03695 0.56 -0.0
3,895,011 + MPMX20_03695 0.61 -0.9
3,895,019 - MPMX20_03695 0.64 +0.8
3,895,019 - MPMX20_03695 0.64 -0.2
3,895,106 + +0.6
3,895,106 + +0.8
3,895,114 - -0.3
3,895,114 - +0.6
3,895,202 + +3.0
3,895,208 - -0.4
3,895,208 - -3.8
3,895,208 - +0.5
3,895,247 + +1.0
3,895,254 + +2.2
3,895,255 - -1.9
3,895,255 - -1.3
3,895,255 - +1.8
3,895,257 + +1.6
3,895,277 + +0.5
3,895,324 - +0.8
3,895,356 + MPMX20_03696 0.12 -1.0
3,895,381 + MPMX20_03696 0.15 -1.5
3,895,381 + MPMX20_03696 0.15 -0.7
3,895,381 + MPMX20_03696 0.15 -0.5
3,895,389 - MPMX20_03696 0.15 -1.4
3,895,389 - MPMX20_03696 0.15 -0.8
3,895,389 - MPMX20_03696 0.15 +0.8
3,895,502 + MPMX20_03696 0.26 -1.5
3,895,510 - MPMX20_03696 0.27 -2.5
3,895,527 + MPMX20_03696 0.29 -2.4
3,895,560 + MPMX20_03696 0.32 -1.2
3,895,563 - MPMX20_03696 0.32 +0.4
3,895,568 - MPMX20_03696 0.33 -0.4
3,895,579 + MPMX20_03696 0.34 -0.2
3,895,641 - MPMX20_03696 0.40 -2.3
3,895,655 - MPMX20_03696 0.41 +1.8
3,895,697 - MPMX20_03696 0.45 -0.1
3,895,802 - MPMX20_03696 0.55 -1.5
3,895,802 - MPMX20_03696 0.55 -0.2
3,895,908 + MPMX20_03696 0.65 +0.8
3,895,916 - MPMX20_03696 0.66 +0.1
3,895,956 + MPMX20_03696 0.70 +0.3
3,895,956 + MPMX20_03696 0.70 -0.1
3,895,979 - MPMX20_03696 0.72 +1.7
3,895,979 - MPMX20_03696 0.72 +1.4
3,896,083 + MPMX20_03696 0.82 -1.2

Or see this region's nucleotide sequence