Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03097

Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03094 and MPMX20_03095 are separated by 69 nucleotidesMPMX20_03095 and MPMX20_03096 overlap by 26 nucleotidesMPMX20_03096 and MPMX20_03097 overlap by 17 nucleotidesMPMX20_03097 and MPMX20_03098 overlap by 8 nucleotides MPMX20_03094: MPMX20_03094 - HTH-type transcriptional regulator MlrA, at 3,247,503 to 3,248,243 _03094 MPMX20_03095: MPMX20_03095 - hypothetical protein, at 3,248,313 to 3,248,426 _03095 MPMX20_03096: MPMX20_03096 - Glycine betaine uptake system permease protein YehW, at 3,248,401 to 3,249,138 _03096 MPMX20_03097: MPMX20_03097 - Glycine betaine uptake system ATP-binding protein YehX, at 3,249,122 to 3,250,072 _03097 MPMX20_03098: MPMX20_03098 - Glycine betaine uptake system permease protein YehY, at 3,250,065 to 3,251,222 _03098 Position (kb) 3249 3250 3251Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 3248.186 kb on - strandat 3248.204 kb on + strandat 3248.254 kb on - strandat 3248.268 kb on - strandat 3248.278 kb on + strandat 3248.286 kb on - strandat 3248.385 kb on - strand, within MPMX20_03095at 3248.385 kb on - strand, within MPMX20_03095at 3248.385 kb on - strand, within MPMX20_03095at 3248.654 kb on + strand, within MPMX20_03096at 3248.681 kb on + strand, within MPMX20_03096at 3248.697 kb on - strand, within MPMX20_03096at 3248.724 kb on + strand, within MPMX20_03096at 3248.916 kb on - strand, within MPMX20_03096at 3248.936 kb on - strand, within MPMX20_03096at 3249.107 kb on + strandat 3249.115 kb on - strandat 3249.139 kb on - strandat 3249.146 kb on - strandat 3249.183 kb on - strandat 3249.263 kb on + strand, within MPMX20_03097at 3249.332 kb on - strand, within MPMX20_03097at 3249.409 kb on - strand, within MPMX20_03097at 3249.492 kb on - strand, within MPMX20_03097at 3249.517 kb on + strand, within MPMX20_03097at 3249.547 kb on - strand, within MPMX20_03097at 3249.610 kb on - strand, within MPMX20_03097at 3249.660 kb on - strand, within MPMX20_03097at 3249.699 kb on + strand, within MPMX20_03097at 3249.700 kb on + strand, within MPMX20_03097at 3249.700 kb on + strand, within MPMX20_03097at 3249.708 kb on - strand, within MPMX20_03097at 3249.708 kb on - strand, within MPMX20_03097at 3249.833 kb on + strand, within MPMX20_03097at 3249.899 kb on + strand, within MPMX20_03097at 3249.899 kb on + strand, within MPMX20_03097at 3249.907 kb on - strand, within MPMX20_03097at 3250.076 kb on + strandat 3250.081 kb on + strandat 3250.089 kb on - strandat 3250.089 kb on - strandat 3250.089 kb on - strandat 3250.141 kb on - strandat 3250.167 kb on + strandat 3250.179 kb on + strandat 3250.179 kb on + strandat 3250.213 kb on - strand, within MPMX20_03098at 3250.213 kb on - strand, within MPMX20_03098at 3250.232 kb on - strand, within MPMX20_03098at 3250.249 kb on - strand, within MPMX20_03098at 3250.279 kb on - strand, within MPMX20_03098at 3250.349 kb on - strand, within MPMX20_03098at 3250.349 kb on - strand, within MPMX20_03098at 3250.370 kb on + strand, within MPMX20_03098at 3250.560 kb on + strand, within MPMX20_03098at 3250.595 kb on - strand, within MPMX20_03098at 3250.601 kb on - strand, within MPMX20_03098at 3250.607 kb on + strand, within MPMX20_03098at 3250.639 kb on - strand, within MPMX20_03098at 3250.762 kb on - strand, within MPMX20_03098at 3250.767 kb on - strand, within MPMX20_03098at 3250.767 kb on - strand, within MPMX20_03098at 3250.767 kb on - strand, within MPMX20_03098at 3250.770 kb on - strand, within MPMX20_03098at 3250.869 kb on - strand, within MPMX20_03098at 3250.871 kb on + strand, within MPMX20_03098at 3250.874 kb on - strand, within MPMX20_03098at 3250.879 kb on - strand, within MPMX20_03098at 3250.879 kb on - strand, within MPMX20_03098at 3250.906 kb on + strand, within MPMX20_03098at 3250.906 kb on - strand, within MPMX20_03098at 3250.932 kb on + strand, within MPMX20_03098at 3250.932 kb on + strand, within MPMX20_03098at 3250.940 kb on - strand, within MPMX20_03098at 3250.960 kb on + strand, within MPMX20_03098at 3250.977 kb on + strand, within MPMX20_03098at 3250.995 kb on - strand, within MPMX20_03098at 3251.010 kb on - strand, within MPMX20_03098

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
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3,248,186 - -1.3
3,248,204 + -1.6
3,248,254 - -0.4
3,248,268 - -0.1
3,248,278 + -1.0
3,248,286 - -0.4
3,248,385 - MPMX20_03095 0.63 -0.2
3,248,385 - MPMX20_03095 0.63 -0.7
3,248,385 - MPMX20_03095 0.63 -0.6
3,248,654 + MPMX20_03096 0.34 -1.0
3,248,681 + MPMX20_03096 0.38 -0.9
3,248,697 - MPMX20_03096 0.40 -2.0
3,248,724 + MPMX20_03096 0.44 +0.9
3,248,916 - MPMX20_03096 0.70 +0.6
3,248,936 - MPMX20_03096 0.72 -1.7
3,249,107 + -0.1
3,249,115 - -0.6
3,249,139 - -0.8
3,249,146 - -0.3
3,249,183 - -1.0
3,249,263 + MPMX20_03097 0.15 +0.7
3,249,332 - MPMX20_03097 0.22 -0.7
3,249,409 - MPMX20_03097 0.30 +0.8
3,249,492 - MPMX20_03097 0.39 -0.2
3,249,517 + MPMX20_03097 0.42 -0.4
3,249,547 - MPMX20_03097 0.45 -1.8
3,249,610 - MPMX20_03097 0.51 +6.8
3,249,660 - MPMX20_03097 0.57 -0.1
3,249,699 + MPMX20_03097 0.61 +0.4
3,249,700 + MPMX20_03097 0.61 -0.7
3,249,700 + MPMX20_03097 0.61 -0.4
3,249,708 - MPMX20_03097 0.62 +1.7
3,249,708 - MPMX20_03097 0.62 -1.1
3,249,833 + MPMX20_03097 0.75 +0.1
3,249,899 + MPMX20_03097 0.82 -0.3
3,249,899 + MPMX20_03097 0.82 +3.0
3,249,907 - MPMX20_03097 0.83 -0.2
3,250,076 + -1.0
3,250,081 + +2.5
3,250,089 - -0.1
3,250,089 - -0.3
3,250,089 - -2.1
3,250,141 - +0.0
3,250,167 + +0.0
3,250,179 + -1.1
3,250,179 + -0.0
3,250,213 - MPMX20_03098 0.13 -1.1
3,250,213 - MPMX20_03098 0.13 -0.0
3,250,232 - MPMX20_03098 0.14 +1.2
3,250,249 - MPMX20_03098 0.16 -0.7
3,250,279 - MPMX20_03098 0.18 -2.3
3,250,349 - MPMX20_03098 0.25 -0.9
3,250,349 - MPMX20_03098 0.25 +0.2
3,250,370 + MPMX20_03098 0.26 -1.8
3,250,560 + MPMX20_03098 0.43 -2.4
3,250,595 - MPMX20_03098 0.46 -0.5
3,250,601 - MPMX20_03098 0.46 -0.7
3,250,607 + MPMX20_03098 0.47 -0.9
3,250,639 - MPMX20_03098 0.50 +0.2
3,250,762 - MPMX20_03098 0.60 -0.2
3,250,767 - MPMX20_03098 0.61 -1.6
3,250,767 - MPMX20_03098 0.61 -0.2
3,250,767 - MPMX20_03098 0.61 +0.2
3,250,770 - MPMX20_03098 0.61 +0.1
3,250,869 - MPMX20_03098 0.69 +0.6
3,250,871 + MPMX20_03098 0.70 -1.3
3,250,874 - MPMX20_03098 0.70 +0.7
3,250,879 - MPMX20_03098 0.70 -1.2
3,250,879 - MPMX20_03098 0.70 -0.7
3,250,906 + MPMX20_03098 0.73 -1.8
3,250,906 - MPMX20_03098 0.73 -1.3
3,250,932 + MPMX20_03098 0.75 -1.1
3,250,932 + MPMX20_03098 0.75 +4.7
3,250,940 - MPMX20_03098 0.76 +1.1
3,250,960 + MPMX20_03098 0.77 -0.6
3,250,977 + MPMX20_03098 0.79 -0.7
3,250,995 - MPMX20_03098 0.80 -2.2
3,251,010 - MPMX20_03098 0.82 -0.3

Or see this region's nucleotide sequence